Wall clock time and date at job start Mon Mar 30 2020 02:57:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52997 * 109.46960 * 2 1 4 4 H 1.08989 * 109.47662 * 304.99787 * 3 2 1 5 5 O 1.42902 * 109.47077 * 65.00528 * 3 2 1 6 6 C 1.53001 * 109.46939 * 184.99923 * 3 2 1 7 7 H 1.09001 * 109.47493 * 300.00223 * 6 3 2 8 8 C 1.53003 * 109.46986 * 60.00224 * 6 3 2 9 9 C 1.50697 * 109.47368 * 180.02562 * 6 3 2 10 10 O 1.21286 * 119.99700 * 0.02562 * 9 6 3 11 11 N 1.34781 * 120.00356 * 180.02562 * 9 6 3 12 12 C 1.39234 * 120.00293 * 185.18193 * 11 9 6 13 13 C 1.39481 * 119.83023 * 324.06670 * 12 11 9 14 14 C 1.36377 * 120.16631 * 180.29536 * 13 12 11 15 15 C 1.40873 * 119.82718 * 359.48081 * 14 13 12 16 16 C 1.41156 * 120.16546 * 180.24887 * 15 14 13 17 17 H 1.07999 * 120.00291 * 205.00129 * 16 15 14 18 18 C 1.39905 * 119.99783 * 25.00669 * 16 15 14 19 19 N 1.30873 * 120.00467 * 17.74758 * 18 16 15 20 20 Si 1.86800 * 119.99797 * 197.75126 * 18 16 15 21 21 H 1.48502 * 109.47150 * 94.98409 * 20 18 16 22 22 H 1.48503 * 109.47177 * 214.97819 * 20 18 16 23 23 H 1.48492 * 109.47400 * 334.98066 * 20 18 16 24 24 C 1.40872 * 119.67251 * 0.51606 * 15 14 13 25 25 C 1.36371 * 119.82617 * 359.73836 * 24 15 14 26 26 H 1.09003 * 109.47320 * 300.00071 * 1 2 3 27 27 H 1.09005 * 109.47177 * 59.99913 * 1 2 3 28 28 H 1.08996 * 109.47332 * 179.97438 * 1 2 3 29 29 H 1.09000 * 109.46835 * 240.00504 * 2 1 3 30 30 H 1.08996 * 109.47212 * 120.00208 * 2 1 3 31 31 H 0.96701 * 114.00085 * 59.99925 * 5 3 2 32 32 H 1.09007 * 109.47231 * 179.97438 * 8 6 3 33 33 H 1.08997 * 109.46961 * 299.99837 * 8 6 3 34 34 H 1.09002 * 109.46880 * 60.00240 * 8 6 3 35 35 H 0.96997 * 119.99605 * 5.18434 * 11 9 6 36 36 H 1.07998 * 119.91904 * 0.02660 * 13 12 11 37 37 H 1.08002 * 120.08845 * 179.70181 * 14 13 12 38 38 H 0.96990 * 120.00224 * 179.97438 * 19 18 16 39 39 H 1.07999 * 120.08468 * 179.70863 * 24 15 14 40 40 H 1.08002 * 119.91516 * 180.02562 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6054 1.9815 -0.8417 5 8 1.6620 2.0813 1.2211 6 6 3.5648 1.4443 -0.1257 7 1 3.9994 0.9053 0.7161 8 6 3.9695 0.7603 -1.4331 9 6 4.0672 2.8650 -0.1251 10 8 3.2829 3.7856 -0.0327 11 7 5.3881 3.1128 -0.2272 12 6 5.8622 4.4175 -0.1184 13 6 5.1123 5.4736 -0.6358 14 6 5.5730 6.7535 -0.5383 15 6 6.8044 7.0085 0.0966 16 6 7.2855 8.3310 0.2062 17 1 8.3453 8.5137 0.3055 18 6 6.3894 9.4053 0.1861 19 7 5.1171 9.2006 0.4149 20 14 7.0088 11.1318 -0.1673 21 1 6.8471 11.4294 -1.6131 22 1 6.2272 12.1110 0.6300 23 1 8.4443 11.2276 0.2003 24 6 7.5560 5.9366 0.6168 25 6 7.0848 4.6616 0.5071 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5139 -0.8900 28 1 -0.3634 -1.0276 -0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8933 -0.5138 0.8899 31 1 2.0142 1.6541 2.0139 32 1 5.0559 0.7620 -1.5229 33 1 3.6062 -0.2673 -1.4331 34 1 3.5349 1.2994 -2.2749 35 1 6.0084 2.3823 -0.3766 36 1 4.1666 5.2769 -1.1187 37 1 4.9936 7.5699 -0.9437 38 1 4.4960 9.9454 0.4014 39 1 8.5031 6.1240 1.1007 40 1 7.6596 3.8387 0.9057 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000899982637.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:01 Heat of formation + Delta-G solvation = -103.612630 kcal Electronic energy + Delta-G solvation = -21274.699955 eV Core-core repulsion = 18052.588633 eV Total energy + Delta-G solvation = -3222.111322 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.40741 -39.49864 -38.31135 -36.13756 -34.99798 -34.34392 -32.84009 -31.40970 -30.70867 -27.05744 -26.85752 -24.93969 -23.23732 -22.79296 -21.93566 -20.73962 -19.25950 -18.61635 -17.75886 -17.36493 -17.09657 -16.38177 -15.99783 -15.72077 -15.59658 -15.08623 -14.92753 -14.47377 -14.25237 -13.95196 -13.69538 -13.43398 -13.37385 -13.23367 -12.86081 -12.82591 -12.73273 -12.69035 -12.35785 -12.31802 -11.74637 -11.70778 -11.68064 -11.52883 -11.20782 -10.86351 -10.60153 -10.29850 -9.45713 -8.87334 -8.61906 -6.27495 0.83597 1.13464 1.36880 1.45695 1.52180 1.88622 2.19960 2.38515 2.75790 3.53363 3.60215 3.72998 3.77311 4.10946 4.23292 4.30638 4.35659 4.43427 4.48612 4.62132 4.77572 4.85181 4.89359 4.98347 5.05117 5.09897 5.12378 5.20665 5.26139 5.30347 5.39707 5.43885 5.46418 5.68402 5.88269 6.09268 6.12382 6.34543 6.68187 6.80553 6.92103 6.94857 7.01554 7.53070 8.33157 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.032958 B = 0.003651 C = 0.003409 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 849.366281 B = 7667.913359 C = 8211.216148 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.146 4.146 3 C 0.123 3.877 4 H 0.070 0.930 5 O -0.572 6.572 6 C -0.128 4.128 7 H 0.128 0.872 8 C -0.143 4.143 9 C 0.494 3.506 10 O -0.566 6.566 11 N -0.646 5.646 12 C 0.007 3.993 13 C -0.102 4.102 14 C -0.183 4.183 15 C 0.073 3.927 16 C -0.495 4.495 17 H 0.083 0.917 18 C 0.029 3.971 19 N -0.830 5.830 20 Si 0.987 3.013 21 H -0.264 1.264 22 H -0.270 1.270 23 H -0.252 1.252 24 C -0.224 4.224 25 C -0.099 4.099 26 H 0.046 0.954 27 H 0.043 0.957 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.379 0.621 32 H 0.076 0.924 33 H 0.103 0.897 34 H 0.047 0.953 35 H 0.416 0.584 36 H 0.091 0.909 37 H 0.093 0.907 38 H 0.286 0.714 39 H 0.111 0.889 40 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.013 -19.291 -1.676 19.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.183 4.183 3 C 0.064 3.936 4 H 0.088 0.912 5 O -0.379 6.379 6 C -0.150 4.150 7 H 0.146 0.854 8 C -0.201 4.201 9 C 0.282 3.718 10 O -0.444 6.444 11 N -0.292 5.292 12 C -0.086 4.086 13 C -0.122 4.122 14 C -0.203 4.203 15 C 0.070 3.930 16 C -0.524 4.524 17 H 0.101 0.899 18 C -0.185 4.185 19 N -0.456 5.456 20 Si 0.807 3.193 21 H -0.189 1.189 22 H -0.195 1.195 23 H -0.175 1.175 24 C -0.244 4.244 25 C -0.119 4.119 26 H 0.065 0.935 27 H 0.063 0.937 28 H 0.090 0.910 29 H 0.114 0.886 30 H 0.104 0.896 31 H 0.227 0.773 32 H 0.095 0.905 33 H 0.121 0.879 34 H 0.067 0.933 35 H 0.253 0.747 36 H 0.109 0.891 37 H 0.111 0.889 38 H 0.097 0.903 39 H 0.129 0.871 40 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -3.124 -18.168 -1.973 18.540 hybrid contribution 0.420 0.684 0.199 0.827 sum -2.704 -17.483 -1.774 17.780 Atomic orbital electron populations 1.21711 0.95650 1.02017 1.01447 1.22262 0.96667 0.94677 1.04685 1.21778 0.90728 0.93869 0.87240 0.91228 1.86729 1.76632 1.58303 1.16191 1.22129 0.98285 0.90878 1.03679 0.85375 1.21872 1.02910 1.01813 0.93475 1.21527 0.81877 0.92758 0.75619 1.90746 1.56246 1.48004 1.49405 1.42932 1.08043 1.06957 1.71273 1.17286 0.97442 0.84387 1.09525 1.20571 0.98383 0.93099 1.00128 1.20886 0.99516 0.95011 1.04933 1.18008 0.91791 0.94033 0.89122 1.19838 0.95219 0.91257 1.46131 0.89930 1.26895 0.94344 1.06016 0.91293 1.69956 1.05156 1.35716 1.34780 0.85130 0.79723 0.75311 0.79141 1.18855 1.19496 1.17523 1.20837 1.02532 0.92806 1.08254 1.20428 0.95521 0.96908 0.99061 0.93522 0.93731 0.91018 0.88638 0.89581 0.77264 0.90484 0.87858 0.93332 0.74674 0.89056 0.88899 0.90332 0.87116 0.84698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.40 9.81 71.98 0.71 -1.70 16 2 C -0.15 -2.01 5.40 30.59 0.17 -1.85 16 3 C 0.12 2.82 2.09 30.59 0.06 2.89 16 4 H 0.07 2.01 8.10 -2.39 -0.02 1.99 16 5 O -0.57 -16.41 11.77 -131.50 -1.55 -17.95 16 6 C -0.13 -2.64 2.51 -11.54 -0.03 -2.67 16 7 H 0.13 1.84 8.14 -2.39 -0.02 1.82 16 8 C -0.14 -2.06 8.74 71.98 0.63 -1.43 16 9 C 0.49 17.01 6.84 87.66 0.60 17.61 16 10 O -0.57 -26.67 12.72 14.43 0.18 -26.49 16 11 N -0.65 -21.63 5.23 -303.11 -1.58 -23.22 16 12 C 0.01 0.32 6.30 38.57 0.24 0.56 16 13 C -0.10 -5.43 8.61 22.14 0.19 -5.24 16 14 C -0.18 -10.65 8.64 22.48 0.19 -10.46 16 15 C 0.07 4.13 5.57 -21.27 -0.12 4.01 16 16 C -0.50 -27.59 9.03 23.39 0.21 -27.38 16 17 H 0.08 4.34 7.91 -2.91 -0.02 4.31 16 18 C 0.03 1.53 5.13 85.24 0.44 1.97 16 19 N -0.83 -47.00 10.98 21.82 0.24 -46.76 16 20 Si 0.99 39.88 29.59 68.60 2.03 41.91 16 21 H -0.26 -10.36 7.11 99.48 0.71 -9.65 16 22 H -0.27 -10.48 7.11 99.48 0.71 -9.77 16 23 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 24 C -0.22 -11.01 9.74 22.48 0.22 -10.79 16 25 C -0.10 -4.24 9.90 22.13 0.22 -4.02 16 26 H 0.05 0.88 7.82 -2.39 -0.02 0.86 16 27 H 0.04 0.78 8.14 -2.38 -0.02 0.76 16 28 H 0.07 0.85 8.14 -2.39 -0.02 0.83 16 29 H 0.10 0.94 6.17 -2.39 -0.01 0.93 16 30 H 0.09 0.87 8.14 -2.39 -0.02 0.85 16 31 H 0.38 7.57 9.05 -74.06 -0.67 6.90 16 32 H 0.08 0.93 7.46 -2.38 -0.02 0.91 16 33 H 0.10 0.84 6.32 -2.39 -0.02 0.82 16 34 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 35 H 0.42 9.84 8.10 -92.71 -0.75 9.08 16 36 H 0.09 5.05 6.24 -2.91 -0.02 5.03 16 37 H 0.09 5.74 6.19 -2.91 -0.02 5.72 16 38 H 0.29 14.75 8.30 -92.72 -0.77 13.98 16 39 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 40 H 0.14 4.49 8.06 -2.91 -0.02 4.46 16 Total: -1.00 -77.01 328.39 2.70 -74.31 By element: Atomic # 1 Polarization: 37.06 SS G_CDS: -0.36 Total: 36.70 kcal Atomic # 6 Polarization: -42.23 SS G_CDS: 3.73 Total: -38.50 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -1.34 Total: -69.98 kcal Atomic # 8 Polarization: -43.08 SS G_CDS: -1.36 Total: -44.44 kcal Atomic # 14 Polarization: 39.88 SS G_CDS: 2.03 Total: 41.91 kcal Total: -77.01 2.70 -74.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000899982637.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.302 kcal (2) G-P(sol) polarization free energy of solvation -77.006 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.308 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.311 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.613 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds