Wall clock time and date at job start Mon Mar 30 2020 01:56:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47105 * 2 1 4 4 C 1.53001 * 109.47105 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47096 * 179.97438 * 4 3 2 6 6 O 1.41602 * 120.00333 * 255.00142 * 5 4 3 7 7 C 1.34774 * 120.00221 * 75.00130 * 5 4 3 8 8 O 1.21282 * 119.99822 * 359.97438 * 7 5 4 9 9 C 1.50696 * 120.00374 * 180.02562 * 7 5 4 10 10 C 1.50708 * 109.47368 * 179.97438 * 9 7 5 11 11 C 1.37631 * 120.12797 * 265.00428 * 10 9 7 12 12 C 1.38617 * 120.24935 * 179.97438 * 11 10 9 13 13 C 1.38659 * 120.49753 * 0.02562 * 12 11 10 14 14 C 1.37591 * 120.24814 * 0.02562 * 13 12 11 15 15 C 1.40703 * 120.12406 * 84.72361 * 10 9 7 16 16 C 1.41394 * 120.24704 * 0.02562 * 15 10 9 17 17 H 1.07999 * 119.99576 * 333.89506 * 16 15 10 18 18 C 1.39936 * 120.00084 * 153.89383 * 16 15 10 19 19 N 1.30823 * 120.00218 * 343.71483 * 18 16 15 20 20 Si 1.86806 * 120.00088 * 163.71714 * 18 16 15 21 21 H 1.48497 * 109.46918 * 60.00210 * 20 18 16 22 22 H 1.48502 * 109.47252 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46900 * 300.00273 * 20 18 16 24 24 H 1.09001 * 109.47008 * 299.99866 * 1 2 3 25 25 H 1.08993 * 109.46788 * 59.99769 * 1 2 3 26 26 H 1.08998 * 109.46984 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47008 * 240.00134 * 2 1 3 28 28 H 1.09003 * 109.47413 * 119.99810 * 2 1 3 29 29 H 1.09001 * 109.47078 * 60.00177 * 3 2 1 30 30 H 1.09006 * 109.47312 * 300.00027 * 3 2 1 31 31 H 1.09001 * 109.47008 * 60.00134 * 4 3 2 32 32 H 1.08995 * 109.47517 * 300.00126 * 4 3 2 33 33 H 0.96704 * 113.99696 * 359.97438 * 6 5 4 34 34 H 1.09000 * 109.47361 * 299.99978 * 9 7 5 35 35 H 1.08997 * 109.47049 * 59.99908 * 9 7 5 36 36 H 1.08005 * 119.87632 * 359.97438 * 11 10 9 37 37 H 1.07993 * 119.74965 * 179.97438 * 12 11 10 38 38 H 1.07998 * 119.87354 * 180.02562 * 13 12 11 39 39 H 1.08008 * 120.12341 * 179.97438 * 14 13 12 40 40 H 0.97001 * 120.00340 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 8 4.5931 3.3852 -1.1861 7 6 3.9987 3.5601 1.1259 8 8 3.5403 3.0794 2.1407 9 6 4.5004 4.9811 1.1252 10 6 4.3213 5.5779 2.4974 11 6 3.2000 6.3219 2.7862 12 6 3.0325 6.8715 4.0477 13 6 3.9902 6.6796 5.0318 14 6 5.1196 5.9402 4.7650 15 6 5.2970 5.3716 3.4900 16 6 6.4505 4.6046 3.2065 17 1 6.4199 3.8480 2.4363 18 6 7.6315 4.8257 3.9237 19 7 7.7796 5.9249 4.6173 20 14 8.9969 3.5512 3.8906 21 1 9.4575 3.3555 2.4925 22 1 10.1326 4.0207 4.7243 23 1 8.4861 2.2646 4.4282 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9330 0.9288 -0.8909 32 1 3.9338 0.9286 0.8890 33 1 4.5945 2.7814 -1.9416 34 1 5.5573 4.9931 0.8585 35 1 3.9357 5.5654 0.3987 36 1 2.4478 6.4780 2.0271 37 1 2.1497 7.4542 4.2653 38 1 3.8492 7.1121 6.0113 39 1 5.8645 5.7924 5.5330 40 1 8.5981 6.0780 5.1148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000904212914.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:54 Heat of formation + Delta-G solvation = -32.055590 kcal Electronic energy + Delta-G solvation = -21597.801767 eV Core-core repulsion = 18378.793390 eV Total energy + Delta-G solvation = -3219.008376 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.40339 -37.49812 -36.38521 -35.32739 -33.55747 -31.90829 -31.63906 -29.40621 -28.79032 -26.55400 -24.98658 -23.57252 -21.31392 -20.85445 -20.28418 -19.35757 -17.46011 -17.02944 -16.65365 -15.43926 -15.37020 -15.07401 -14.53644 -14.14797 -13.90774 -13.47140 -13.33754 -13.24523 -12.99798 -12.61156 -12.50322 -12.28418 -11.67791 -11.51565 -11.44473 -11.33957 -11.19545 -11.09754 -10.93608 -10.91446 -10.63378 -10.62245 -10.34834 -9.41476 -9.33122 -9.22227 -9.09282 -8.33200 -7.24598 -7.22539 -6.67203 -4.27651 2.26935 2.87443 3.08826 3.10406 3.13692 3.24285 3.33386 3.98902 4.52475 4.72818 4.75560 4.88561 4.98970 5.19053 5.42384 5.50769 5.59743 5.70192 5.76567 5.82121 5.93845 6.03025 6.12971 6.17538 6.24300 6.29651 6.37553 6.57180 6.60536 6.86136 7.13616 7.15567 7.36689 7.49188 7.70427 7.82664 8.00246 8.14028 8.19487 8.38718 8.69919 8.75161 8.98512 9.08282 10.26986 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015318 B = 0.005600 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.506974 B = 4998.525634 C = 5969.397086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C -0.140 4.140 4 C 0.105 3.895 5 N -0.489 5.489 6 O -0.330 6.330 7 C 0.544 3.456 8 O -0.504 6.504 9 C -0.060 4.060 10 C -0.184 4.184 11 C -0.081 4.081 12 C -0.240 4.240 13 C -0.107 4.107 14 C -0.159 4.159 15 C 0.129 3.871 16 C -0.456 4.456 17 H 0.073 0.927 18 C 0.077 3.923 19 N -0.796 5.796 20 Si 0.903 3.097 21 H -0.266 1.266 22 H -0.278 1.278 23 H -0.265 1.265 24 H 0.056 0.944 25 H 0.052 0.948 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.065 0.935 29 H 0.078 0.922 30 H 0.062 0.938 31 H 0.078 0.922 32 H 0.086 0.914 33 H 0.381 0.619 34 H 0.098 0.902 35 H 0.077 0.923 36 H 0.084 0.916 37 H 0.085 0.915 38 H 0.086 0.914 39 H 0.117 0.883 40 H 0.280 0.720 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.924 -8.542 -10.625 14.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.158 4.158 3 C -0.178 4.178 4 C -0.016 4.016 5 N -0.270 5.270 6 O -0.222 6.222 7 C 0.335 3.665 8 O -0.377 6.377 9 C -0.099 4.099 10 C -0.186 4.186 11 C -0.100 4.100 12 C -0.259 4.259 13 C -0.126 4.126 14 C -0.179 4.179 15 C 0.126 3.874 16 C -0.486 4.486 17 H 0.091 0.909 18 C -0.140 4.140 19 N -0.422 5.422 20 Si 0.728 3.272 21 H -0.191 1.191 22 H -0.203 1.203 23 H -0.189 1.189 24 H 0.075 0.925 25 H 0.071 0.929 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.084 0.916 29 H 0.096 0.904 30 H 0.081 0.919 31 H 0.097 0.903 32 H 0.104 0.896 33 H 0.226 0.774 34 H 0.116 0.884 35 H 0.095 0.905 36 H 0.102 0.898 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.135 0.865 40 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges -5.905 -8.129 -9.499 13.827 hybrid contribution 0.713 -0.966 -0.681 1.380 sum -5.192 -9.095 -10.180 14.605 Atomic orbital electron populations 1.21752 0.95704 1.01424 1.02008 1.21439 0.96122 0.96293 1.01959 1.22046 0.95091 0.97345 1.03368 1.21878 0.94579 0.81881 1.03296 1.50004 1.63319 1.11785 1.01880 1.89123 1.84021 1.35001 1.14084 1.21082 0.77238 0.88697 0.79457 1.90743 1.45477 1.72436 1.29048 1.20144 1.02758 0.89854 0.97150 1.19159 0.99152 1.06555 0.93683 1.20308 0.95776 0.98215 0.95656 1.20298 1.00655 1.09812 0.95144 1.20669 0.95207 0.99678 0.97029 1.21289 0.97053 1.02152 0.97373 1.17338 0.90911 0.89117 0.89995 1.19441 0.94427 1.17314 1.17414 0.90895 1.25863 0.99710 0.94940 0.93462 1.69814 1.26691 1.22110 1.23547 0.86453 0.79733 0.81838 0.79203 1.19094 1.20336 1.18923 0.92475 0.92885 0.92830 0.92217 0.91650 0.90352 0.91941 0.90333 0.89582 0.77428 0.88362 0.90452 0.89784 0.89698 0.89612 0.86522 0.90958 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.37 9.91 37.16 0.37 -1.00 16 2 C -0.12 -1.15 5.93 -26.73 -0.16 -1.31 16 3 C -0.14 -1.67 5.34 -26.73 -0.14 -1.82 16 4 C 0.11 1.32 5.57 -4.04 -0.02 1.30 16 5 N -0.49 -7.81 3.78 -60.30 -0.23 -8.04 16 6 O -0.33 -4.32 14.28 -11.47 -0.16 -4.48 16 7 C 0.54 11.27 7.19 -10.99 -0.08 11.19 16 8 O -0.50 -12.06 15.11 5.56 0.08 -11.98 16 9 C -0.06 -1.28 4.49 -29.03 -0.13 -1.41 16 10 C -0.18 -4.61 4.43 -103.91 -0.46 -5.08 16 11 C -0.08 -1.95 9.66 -39.66 -0.38 -2.33 16 12 C -0.24 -5.73 10.05 -39.29 -0.39 -6.12 16 13 C -0.11 -2.68 10.02 -39.66 -0.40 -3.08 16 14 C -0.16 -4.36 8.68 -38.88 -0.34 -4.69 16 15 C 0.13 3.55 5.56 -106.82 -0.59 2.95 16 16 C -0.46 -12.39 8.14 -37.75 -0.31 -12.69 16 17 H 0.07 1.95 6.67 -52.49 -0.35 1.60 16 18 C 0.08 1.99 5.16 -17.35 -0.09 1.91 16 19 N -0.80 -20.99 10.95 55.55 0.61 -20.38 16 20 Si 0.90 19.31 29.59 -169.99 -5.03 14.28 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.17 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.26 -5.70 7.11 56.52 0.40 -5.30 16 24 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 25 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.08 1.20 7.34 -51.93 -0.38 0.81 16 30 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 31 H 0.08 0.68 7.83 -51.93 -0.41 0.28 16 32 H 0.09 1.22 7.90 -51.93 -0.41 0.81 16 33 H 0.38 2.71 8.72 45.56 0.40 3.10 16 34 H 0.10 2.17 7.08 -51.93 -0.37 1.80 16 35 H 0.08 1.49 8.05 -51.93 -0.42 1.07 16 36 H 0.08 1.78 8.06 -52.48 -0.42 1.36 16 37 H 0.08 1.79 8.06 -52.49 -0.42 1.37 16 38 H 0.09 1.91 8.06 -52.49 -0.42 1.49 16 39 H 0.12 3.26 6.20 -52.48 -0.33 2.94 16 40 H 0.28 6.74 8.30 -40.82 -0.34 6.40 16 LS Contribution 336.32 15.07 5.07 5.07 Total: -1.00 -31.79 336.32 -7.99 -39.79 By element: Atomic # 1 Polarization: 13.13 SS G_CDS: -5.20 Total: 7.93 kcal Atomic # 6 Polarization: -19.06 SS G_CDS: -3.13 Total: -22.19 kcal Atomic # 7 Polarization: -28.80 SS G_CDS: 0.38 Total: -28.42 kcal Atomic # 8 Polarization: -16.38 SS G_CDS: -0.08 Total: -16.46 kcal Atomic # 14 Polarization: 19.31 SS G_CDS: -5.03 Total: 14.28 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -31.79 -7.99 -39.79 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904212914.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.730 kcal (2) G-P(sol) polarization free energy of solvation -31.793 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.063 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.786 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.056 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds