Wall clock time and date at job start Mon Mar 30 2020 01:56:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.53001 * 109.47105 * 2 1 4 4 C 1.53001 * 109.47105 * 180.02562 * 3 2 1 5 5 N 1.46498 * 109.47096 * 179.97438 * 4 3 2 6 6 O 1.41602 * 120.00333 * 255.00142 * 5 4 3 7 7 C 1.34774 * 120.00221 * 75.00130 * 5 4 3 8 8 O 1.21282 * 119.99822 * 359.97438 * 7 5 4 9 9 C 1.50696 * 120.00374 * 180.02562 * 7 5 4 10 10 C 1.50708 * 109.47368 * 179.97438 * 9 7 5 11 11 C 1.37631 * 120.12797 * 265.00428 * 10 9 7 12 12 C 1.38617 * 120.24935 * 179.97438 * 11 10 9 13 13 C 1.38659 * 120.49753 * 0.02562 * 12 11 10 14 14 C 1.37591 * 120.24814 * 0.02562 * 13 12 11 15 15 C 1.40703 * 120.12406 * 84.72361 * 10 9 7 16 16 C 1.41394 * 120.24704 * 0.02562 * 15 10 9 17 17 H 1.07999 * 119.99576 * 333.89506 * 16 15 10 18 18 C 1.39936 * 120.00084 * 153.89383 * 16 15 10 19 19 N 1.30823 * 120.00218 * 343.71483 * 18 16 15 20 20 Si 1.86806 * 120.00088 * 163.71714 * 18 16 15 21 21 H 1.48497 * 109.46918 * 60.00210 * 20 18 16 22 22 H 1.48502 * 109.47252 * 179.97438 * 20 18 16 23 23 H 1.48498 * 109.46900 * 300.00273 * 20 18 16 24 24 H 1.09001 * 109.47008 * 299.99866 * 1 2 3 25 25 H 1.08993 * 109.46788 * 59.99769 * 1 2 3 26 26 H 1.08998 * 109.46984 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.47008 * 240.00134 * 2 1 3 28 28 H 1.09003 * 109.47413 * 119.99810 * 2 1 3 29 29 H 1.09001 * 109.47078 * 60.00177 * 3 2 1 30 30 H 1.09006 * 109.47312 * 300.00027 * 3 2 1 31 31 H 1.09001 * 109.47008 * 60.00134 * 4 3 2 32 32 H 1.08995 * 109.47517 * 300.00126 * 4 3 2 33 33 H 0.96704 * 113.99696 * 359.97438 * 6 5 4 34 34 H 1.09000 * 109.47361 * 299.99978 * 9 7 5 35 35 H 1.08997 * 109.47049 * 59.99908 * 9 7 5 36 36 H 1.08005 * 119.87632 * 359.97438 * 11 10 9 37 37 H 1.07993 * 119.74965 * 179.97438 * 12 11 10 38 38 H 1.07998 * 119.87354 * 180.02562 * 13 12 11 39 39 H 1.08008 * 120.12341 * 179.97438 * 14 13 12 40 40 H 0.97001 * 120.00340 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 -0.0013 6 8 4.5931 3.3852 -1.1861 7 6 3.9987 3.5601 1.1259 8 8 3.5403 3.0794 2.1407 9 6 4.5004 4.9811 1.1252 10 6 4.3213 5.5779 2.4974 11 6 3.2000 6.3219 2.7862 12 6 3.0325 6.8715 4.0477 13 6 3.9902 6.6796 5.0318 14 6 5.1196 5.9402 4.7650 15 6 5.2970 5.3716 3.4900 16 6 6.4505 4.6046 3.2065 17 1 6.4199 3.8480 2.4363 18 6 7.6315 4.8257 3.9237 19 7 7.7796 5.9249 4.6173 20 14 8.9969 3.5512 3.8906 21 1 9.4575 3.3555 2.4925 22 1 10.1326 4.0207 4.7243 23 1 8.4861 2.2646 4.4282 24 1 -0.3633 0.5138 0.8900 25 1 -0.3632 0.5138 -0.8899 26 1 -0.3633 -1.0277 0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6767 1.9563 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9330 0.9288 -0.8909 32 1 3.9338 0.9286 0.8890 33 1 4.5945 2.7814 -1.9416 34 1 5.5573 4.9931 0.8585 35 1 3.9357 5.5654 0.3987 36 1 2.4478 6.4780 2.0271 37 1 2.1497 7.4542 4.2653 38 1 3.8492 7.1121 6.0113 39 1 5.8645 5.7924 5.5330 40 1 8.5981 6.0780 5.1148 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000904212914.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:53 Heat of formation + Delta-G solvation = -51.728685 kcal Electronic energy + Delta-G solvation = -21598.654856 eV Core-core repulsion = 18378.793390 eV Total energy + Delta-G solvation = -3219.861466 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.92146 -39.27143 -37.76764 -36.25108 -35.50241 -33.44581 -33.01624 -31.35664 -30.06728 -28.16627 -26.85358 -24.71508 -22.82119 -22.23914 -21.80687 -20.99700 -19.11635 -18.60323 -18.05340 -17.25196 -16.60215 -16.36040 -16.18278 -15.64316 -15.42830 -15.19665 -14.64975 -14.53290 -14.36308 -13.95804 -13.74831 -13.53757 -13.37619 -13.31704 -12.91416 -12.76205 -12.72571 -12.49450 -12.30842 -12.19563 -12.11477 -12.00301 -11.50458 -11.32839 -11.21871 -11.02827 -10.85750 -9.60163 -9.22924 -9.16995 -8.59275 -6.29680 0.93829 1.08111 1.24963 1.34778 1.45680 1.54105 1.67215 2.20232 2.77408 3.36615 3.82665 3.87166 3.99867 4.15201 4.24541 4.36646 4.39823 4.49854 4.59301 4.62297 4.68145 4.72561 4.83205 4.86584 4.94302 5.02957 5.08453 5.19687 5.24275 5.33613 5.37108 5.43653 5.54476 5.74816 5.87911 6.05262 6.16964 6.21161 6.42508 6.69224 6.75163 6.99287 7.10586 7.30242 8.37206 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015318 B = 0.005600 C = 0.004689 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1827.506974 B = 4998.525634 C = 5969.397086 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.116 4.116 3 C -0.132 4.132 4 C 0.101 3.899 5 N -0.482 5.482 6 O -0.330 6.330 7 C 0.540 3.460 8 O -0.550 6.550 9 C -0.056 4.056 10 C -0.192 4.192 11 C -0.092 4.092 12 C -0.240 4.240 13 C -0.116 4.116 14 C -0.192 4.192 15 C 0.096 3.904 16 C -0.484 4.484 17 H 0.067 0.933 18 C 0.037 3.963 19 N -0.826 5.826 20 Si 0.972 3.028 21 H -0.256 1.256 22 H -0.264 1.264 23 H -0.268 1.268 24 H 0.039 0.961 25 H 0.060 0.940 26 H 0.067 0.933 27 H 0.087 0.913 28 H 0.056 0.944 29 H 0.037 0.963 30 H 0.075 0.925 31 H 0.129 0.871 32 H 0.065 0.935 33 H 0.409 0.591 34 H 0.088 0.912 35 H 0.100 0.900 36 H 0.113 0.887 37 H 0.117 0.883 38 H 0.108 0.892 39 H 0.099 0.901 40 H 0.287 0.713 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.190 -9.644 -12.922 17.272 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.154 4.154 3 C -0.171 4.171 4 C -0.019 4.019 5 N -0.259 5.259 6 O -0.227 6.227 7 C 0.331 3.669 8 O -0.427 6.427 9 C -0.096 4.096 10 C -0.194 4.194 11 C -0.110 4.110 12 C -0.259 4.259 13 C -0.134 4.134 14 C -0.211 4.211 15 C 0.094 3.906 16 C -0.514 4.514 17 H 0.085 0.915 18 C -0.178 4.178 19 N -0.452 5.452 20 Si 0.793 3.207 21 H -0.180 1.180 22 H -0.188 1.188 23 H -0.193 1.193 24 H 0.058 0.942 25 H 0.080 0.920 26 H 0.086 0.914 27 H 0.106 0.894 28 H 0.074 0.926 29 H 0.056 0.944 30 H 0.093 0.907 31 H 0.147 0.853 32 H 0.084 0.916 33 H 0.259 0.741 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.131 0.869 37 H 0.135 0.865 38 H 0.126 0.874 39 H 0.117 0.883 40 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -6.178 -9.251 -11.861 16.261 hybrid contribution 0.704 -0.586 -0.085 0.920 sum -5.474 -9.837 -11.946 16.415 Atomic orbital electron populations 1.21762 0.95347 1.02253 1.01597 1.21426 0.96420 0.94651 1.02859 1.21960 0.94521 0.98715 1.01920 1.22156 0.95021 0.79916 1.04758 1.49590 1.61767 1.12416 1.02136 1.89106 1.83589 1.36151 1.13891 1.20672 0.77308 0.88623 0.80275 1.90719 1.47617 1.73272 1.31106 1.20076 1.02560 0.91193 0.95741 1.19591 0.98813 1.06098 0.94880 1.20718 0.96054 0.97614 0.96622 1.20712 1.01179 1.09271 0.94786 1.20960 0.94725 0.99204 0.98528 1.21305 0.98058 1.04381 0.97382 1.17719 0.92106 0.89973 0.90775 1.19572 0.95393 1.17913 1.18527 0.91514 1.26667 1.01760 0.96649 0.92715 1.69871 1.27709 1.23528 1.24094 0.85411 0.76864 0.78640 0.79785 1.18003 1.18827 1.19323 0.94176 0.92049 0.91389 0.89449 0.92550 0.94433 0.90673 0.85298 0.91642 0.74080 0.89379 0.88181 0.86865 0.86514 0.87412 0.88320 0.90279 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.51 9.91 71.98 0.71 -1.79 16 2 C -0.12 -1.98 5.93 30.59 0.18 -1.80 16 3 C -0.13 -2.99 5.34 30.59 0.16 -2.82 16 4 C 0.10 2.36 5.57 86.38 0.48 2.84 16 5 N -0.48 -14.65 3.78 -463.07 -1.75 -16.40 16 6 O -0.33 -7.66 14.28 -38.79 -0.55 -8.21 16 7 C 0.54 22.48 7.19 87.66 0.63 23.11 16 8 O -0.55 -27.16 15.11 -3.04 -0.05 -27.20 16 9 C -0.06 -2.43 4.49 29.10 0.13 -2.30 16 10 C -0.19 -9.80 4.43 -19.40 -0.09 -9.89 16 11 C -0.09 -4.35 9.66 22.22 0.21 -4.14 16 12 C -0.24 -11.28 10.05 22.46 0.23 -11.06 16 13 C -0.12 -5.84 10.02 22.22 0.22 -5.62 16 14 C -0.19 -10.89 8.68 22.73 0.20 -10.69 16 15 C 0.10 5.50 5.56 -21.29 -0.12 5.39 16 16 C -0.48 -27.25 8.14 23.46 0.19 -27.06 16 17 H 0.07 3.70 6.67 -2.91 -0.02 3.68 16 18 C 0.04 1.92 5.16 85.25 0.44 2.36 16 19 N -0.83 -44.84 10.95 21.82 0.24 -44.60 16 20 Si 0.97 40.10 29.59 68.60 2.03 42.13 16 21 H -0.26 -10.04 7.11 99.48 0.71 -9.34 16 22 H -0.26 -10.18 7.11 99.48 0.71 -9.47 16 23 H -0.27 -11.14 7.11 99.48 0.71 -10.44 16 24 H 0.04 0.78 8.14 -2.39 -0.02 0.76 16 25 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 26 H 0.07 0.92 8.14 -2.39 -0.02 0.90 16 27 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 28 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.04 1.16 7.34 -2.39 -0.02 1.14 16 30 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 31 H 0.13 1.67 7.83 -2.39 -0.02 1.65 16 32 H 0.07 1.83 7.90 -2.39 -0.02 1.81 16 33 H 0.41 4.04 8.72 -74.05 -0.65 3.39 16 34 H 0.09 3.94 7.08 -2.39 -0.02 3.92 16 35 H 0.10 3.73 8.05 -2.39 -0.02 3.72 16 36 H 0.11 4.59 8.06 -2.91 -0.02 4.57 16 37 H 0.12 4.66 8.06 -2.91 -0.02 4.63 16 38 H 0.11 4.79 8.06 -2.91 -0.02 4.77 16 39 H 0.10 5.82 6.20 -2.91 -0.02 5.80 16 40 H 0.29 14.11 8.30 -92.71 -0.77 13.34 16 Total: -1.00 -72.37 336.32 3.90 -68.47 By element: Atomic # 1 Polarization: 28.90 SS G_CDS: 0.39 Total: 29.29 kcal Atomic # 6 Polarization: -47.06 SS G_CDS: 3.59 Total: -43.47 kcal Atomic # 7 Polarization: -59.50 SS G_CDS: -1.51 Total: -61.01 kcal Atomic # 8 Polarization: -34.82 SS G_CDS: -0.60 Total: -35.41 kcal Atomic # 14 Polarization: 40.10 SS G_CDS: 2.03 Total: 42.13 kcal Total: -72.37 3.90 -68.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000904212914.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.746 kcal (2) G-P(sol) polarization free energy of solvation -72.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.624 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.896 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds