Wall clock time and date at job start Mon Mar 30 2020 02:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47222 * 2 1 4 4 H 1.09000 * 109.47529 * 55.00255 * 3 2 1 5 5 O 1.42895 * 109.46999 * 294.99660 * 3 2 1 6 6 C 1.52998 * 109.47250 * 174.99903 * 3 2 1 7 7 H 1.09002 * 109.47297 * 59.99683 * 6 3 2 8 8 C 1.53002 * 109.47415 * 300.00091 * 6 3 2 9 9 C 1.50701 * 109.47508 * 179.97438 * 6 3 2 10 10 O 1.21290 * 119.99457 * 0.02562 * 9 6 3 11 11 N 1.34770 * 120.00419 * 179.97438 * 9 6 3 12 12 C 1.39939 * 120.00231 * 174.89890 * 11 9 6 13 13 C 1.39292 * 119.94626 * 325.52100 * 12 11 9 14 14 C 1.38486 * 120.42899 * 179.76090 * 13 12 11 15 15 C 1.37693 * 120.31891 * 0.51662 * 14 13 12 16 16 C 1.40735 * 119.88295 * 359.74241 * 15 14 13 17 17 C 1.41413 * 120.20883 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00599 * 205.16964 * 17 16 15 19 19 C 1.39931 * 119.99424 * 25.17278 * 17 16 15 20 20 N 1.30831 * 120.00534 * 16.80301 * 19 17 16 21 21 Si 1.86798 * 119.99815 * 196.80749 * 19 17 16 22 22 H 1.48502 * 109.47186 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47428 * 119.99993 * 21 19 17 24 24 H 1.48509 * 109.47176 * 239.99977 * 21 19 17 25 25 C 1.38244 * 119.94894 * 145.79934 * 12 11 9 26 26 H 1.08999 * 109.46484 * 60.00355 * 1 2 3 27 27 H 1.08999 * 109.46907 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46986 * 300.00099 * 1 2 3 29 29 H 1.08998 * 109.47306 * 239.99458 * 2 1 3 30 30 H 1.09004 * 109.47289 * 120.00013 * 2 1 3 31 31 H 0.96703 * 114.00593 * 299.99855 * 5 3 2 32 32 H 1.08999 * 109.47062 * 59.99040 * 8 6 3 33 33 H 1.08992 * 109.47599 * 180.02562 * 8 6 3 34 34 H 1.09002 * 109.46555 * 300.00046 * 8 6 3 35 35 H 0.97000 * 120.00308 * 354.90152 * 11 9 6 36 36 H 1.08002 * 119.78207 * 0.02647 * 13 12 11 37 37 H 1.07993 * 119.84076 * 180.26272 * 14 13 12 38 38 H 1.07993 * 120.05393 * 179.76656 * 15 14 13 39 39 H 0.97005 * 120.00409 * 179.97438 * 20 19 17 40 40 H 1.08003 * 120.15740 * 359.95582 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 8 1.6621 2.0813 -1.2210 6 6 3.5648 1.4443 0.1257 7 1 3.9995 0.9052 -0.7160 8 6 3.9696 0.7603 1.4331 9 6 4.0673 2.8651 0.1251 10 8 3.2828 3.7856 0.0336 11 7 5.3881 3.1129 0.2273 12 6 5.8644 4.4243 0.1196 13 6 5.2379 5.3232 -0.7405 14 6 5.6978 6.6247 -0.8512 15 6 6.7871 7.0416 -0.1194 16 6 7.4336 6.1429 0.7496 17 6 8.5526 6.5639 1.5049 18 1 9.2814 5.8406 1.8394 19 6 8.7154 7.9178 1.8188 20 7 7.7033 8.7401 1.7136 21 14 10.3780 8.5511 2.3880 22 1 11.3497 7.4287 2.4230 23 1 10.8593 9.5939 1.4466 24 1 10.2467 9.1341 3.7475 25 6 6.9595 4.8240 0.8626 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.0143 1.6542 -2.0139 32 1 3.6062 -0.2673 1.4332 33 1 5.0558 0.7620 1.5229 34 1 3.5350 1.2994 2.2749 35 1 6.0086 2.3822 0.3754 36 1 4.3852 5.0042 -1.3216 37 1 5.2023 7.3149 -1.5178 38 1 7.1445 8.0565 -0.2118 39 1 7.8161 9.6786 1.9316 40 1 7.4483 4.1266 1.5269 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909367640.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:04 Heat of formation + Delta-G solvation = -84.002976 kcal Electronic energy + Delta-G solvation = -21225.903523 eV Core-core repulsion = 18004.642539 eV Total energy + Delta-G solvation = -3221.260984 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -40.07548 -38.03899 -36.82572 -34.36707 -33.78685 -32.96320 -31.98415 -29.79961 -28.10924 -26.08312 -25.21992 -24.21032 -21.77827 -20.96062 -20.69043 -19.43821 -17.64454 -16.91738 -16.54320 -15.60897 -15.44267 -15.18515 -14.76122 -14.56441 -14.41342 -13.88250 -13.44948 -12.97883 -12.87726 -12.69759 -12.35739 -12.24191 -12.09207 -12.05070 -11.64486 -11.56433 -11.15014 -11.10979 -11.07771 -10.87732 -10.72236 -10.42896 -10.12421 -9.95197 -9.56995 -9.27604 -9.14254 -8.82755 -7.43370 -6.88471 -6.69514 -4.33756 2.65711 2.82818 3.08948 3.13979 3.20328 3.40118 3.61357 3.95767 4.36930 4.45056 4.65710 4.70870 4.89626 4.94332 5.07861 5.14411 5.36598 5.43632 5.56638 5.60384 5.69987 5.72928 5.80513 5.93534 6.08258 6.14145 6.33425 6.59732 6.81592 6.96055 7.05684 7.09135 7.28772 7.64750 7.70018 7.72215 8.03278 8.06921 8.18992 8.35846 8.63491 8.78270 8.92219 9.00941 10.23471 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040928 B = 0.003468 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.960094 B = 8070.924244 C = 8469.801491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.158 4.158 3 C 0.127 3.873 4 H 0.103 0.897 5 O -0.541 6.541 6 C -0.145 4.145 7 H 0.096 0.904 8 C -0.147 4.147 9 C 0.507 3.493 10 O -0.502 6.502 11 N -0.671 5.671 12 C 0.154 3.846 13 C -0.225 4.225 14 C -0.095 4.095 15 C -0.168 4.168 16 C 0.122 3.878 17 C -0.465 4.465 18 H 0.077 0.923 19 C 0.076 3.924 20 N -0.794 5.794 21 Si 0.907 3.093 22 H -0.261 1.261 23 H -0.272 1.272 24 H -0.275 1.275 25 C -0.245 4.245 26 H 0.061 0.939 27 H 0.051 0.949 28 H 0.054 0.946 29 H 0.064 0.936 30 H 0.075 0.925 31 H 0.365 0.635 32 H 0.069 0.931 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.397 0.603 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.279 0.721 40 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.108 -15.645 -2.302 16.952 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.196 4.196 3 C 0.068 3.932 4 H 0.121 0.879 5 O -0.344 6.344 6 C -0.167 4.167 7 H 0.114 0.886 8 C -0.204 4.204 9 C 0.293 3.707 10 O -0.375 6.375 11 N -0.315 5.315 12 C 0.062 3.938 13 C -0.247 4.247 14 C -0.114 4.114 15 C -0.188 4.188 16 C 0.119 3.881 17 C -0.495 4.495 18 H 0.095 0.905 19 C -0.142 4.142 20 N -0.420 5.420 21 Si 0.732 3.268 22 H -0.185 1.185 23 H -0.197 1.197 24 H -0.201 1.201 25 C -0.267 4.267 26 H 0.080 0.920 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.083 0.917 30 H 0.093 0.907 31 H 0.211 0.789 32 H 0.088 0.912 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.231 0.769 36 H 0.119 0.881 37 H 0.109 0.891 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.112 0.888 Dipole moment (debyes) X Y Z Total from point charges -7.098 -14.351 -1.916 16.125 hybrid contribution 1.410 -0.434 0.118 1.480 sum -5.687 -14.785 -1.798 15.943 Atomic orbital electron populations 1.21691 0.95044 1.01188 1.02653 1.22347 0.97269 0.97243 1.02743 1.21727 0.90405 0.92219 0.88898 0.87941 1.86757 1.76014 1.56835 1.14808 1.22143 0.98828 0.94751 1.00971 0.88632 1.21820 1.02142 1.00625 0.95840 1.20367 0.82371 0.90770 0.77240 1.90770 1.54826 1.45619 1.46334 1.43528 1.07396 1.08559 1.72020 1.17440 0.96105 0.83008 0.97243 1.20315 1.04488 0.94611 1.05243 1.20593 0.97030 0.94547 0.99276 1.21367 0.98128 1.00776 0.98541 1.17372 0.91303 0.89873 0.89581 1.19528 1.07065 0.92701 1.30225 0.90515 1.25890 0.97724 0.96896 0.93658 1.69847 1.30500 1.05435 1.36209 0.86284 0.82440 0.79406 0.78675 1.18485 1.19739 1.20073 1.20698 1.01641 0.98505 1.05823 0.91995 0.93001 0.92663 0.91731 0.90681 0.78943 0.91173 0.91727 0.91674 0.76933 0.88115 0.89087 0.86343 0.90971 0.88825 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 9.81 37.16 0.36 -0.88 16 2 C -0.16 -1.29 5.40 -26.73 -0.14 -1.43 16 3 C 0.13 1.47 2.09 -26.73 -0.06 1.42 16 4 H 0.10 1.40 8.10 -51.93 -0.42 0.98 16 5 O -0.54 -7.29 11.77 -53.50 -0.63 -7.92 16 6 C -0.14 -1.65 2.51 -91.77 -0.23 -1.88 16 7 H 0.10 0.88 8.14 -51.93 -0.42 0.45 16 8 C -0.15 -1.35 8.74 37.16 0.32 -1.02 16 9 C 0.51 8.80 6.74 -10.99 -0.07 8.72 16 10 O -0.50 -11.12 13.03 -12.72 -0.17 -11.28 16 11 N -0.67 -12.01 5.26 -9.91 -0.05 -12.07 16 12 C 0.15 3.55 6.25 -83.76 -0.52 3.02 16 13 C -0.23 -5.53 8.66 -39.10 -0.34 -5.87 16 14 C -0.10 -2.39 10.02 -39.69 -0.40 -2.79 16 15 C -0.17 -4.52 8.69 -38.84 -0.34 -4.86 16 16 C 0.12 3.29 5.57 -106.85 -0.59 2.69 16 17 C -0.47 -12.40 9.05 -37.74 -0.34 -12.75 16 18 H 0.08 1.95 7.90 -52.49 -0.41 1.54 16 19 C 0.08 1.92 5.16 -17.34 -0.09 1.83 16 20 N -0.79 -20.97 10.94 55.55 0.61 -20.36 16 21 Si 0.91 18.77 29.59 -169.99 -5.03 13.74 16 22 H -0.26 -5.32 7.11 56.52 0.40 -4.91 16 23 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 25 C -0.24 -6.02 9.70 -38.69 -0.38 -6.39 16 26 H 0.06 0.57 7.82 -51.93 -0.41 0.17 16 27 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 28 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 29 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 30 H 0.07 0.53 6.17 -51.93 -0.32 0.21 16 31 H 0.36 3.48 9.05 45.56 0.41 3.90 16 32 H 0.07 0.48 6.32 -51.93 -0.33 0.15 16 33 H 0.06 0.56 7.46 -51.93 -0.39 0.17 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.40 5.62 8.10 -40.82 -0.33 5.29 16 36 H 0.10 2.46 6.48 -52.49 -0.34 2.12 16 37 H 0.09 2.07 8.06 -52.49 -0.42 1.65 16 38 H 0.12 3.25 6.17 -52.49 -0.32 2.93 16 39 H 0.28 6.69 8.30 -40.82 -0.34 6.35 16 40 H 0.09 2.12 8.06 -52.48 -0.42 1.69 16 LS Contribution 328.97 15.07 4.96 4.96 Total: -1.00 -32.45 328.97 -8.08 -40.53 By element: Atomic # 1 Polarization: 17.55 SS G_CDS: -4.95 Total: 12.60 kcal Atomic # 6 Polarization: -17.38 SS G_CDS: -2.81 Total: -20.19 kcal Atomic # 7 Polarization: -32.98 SS G_CDS: 0.56 Total: -32.43 kcal Atomic # 8 Polarization: -18.41 SS G_CDS: -0.80 Total: -19.20 kcal Atomic # 14 Polarization: 18.77 SS G_CDS: -5.03 Total: 13.74 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -32.45 -8.08 -40.53 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909367640.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.478 kcal (2) G-P(sol) polarization free energy of solvation -32.446 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -75.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.525 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.003 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds