Wall clock time and date at job start Mon Mar 30 2020 02:57:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47222 * 2 1 4 4 H 1.09000 * 109.47529 * 55.00255 * 3 2 1 5 5 O 1.42895 * 109.46999 * 294.99660 * 3 2 1 6 6 C 1.52998 * 109.47250 * 174.99903 * 3 2 1 7 7 H 1.09002 * 109.47297 * 59.99683 * 6 3 2 8 8 C 1.53002 * 109.47415 * 300.00091 * 6 3 2 9 9 C 1.50701 * 109.47508 * 179.97438 * 6 3 2 10 10 O 1.21290 * 119.99457 * 0.02562 * 9 6 3 11 11 N 1.34770 * 120.00419 * 179.97438 * 9 6 3 12 12 C 1.39939 * 120.00231 * 174.89890 * 11 9 6 13 13 C 1.39292 * 119.94626 * 325.52100 * 12 11 9 14 14 C 1.38486 * 120.42899 * 179.76090 * 13 12 11 15 15 C 1.37693 * 120.31891 * 0.51662 * 14 13 12 16 16 C 1.40735 * 119.88295 * 359.74241 * 15 14 13 17 17 C 1.41413 * 120.20883 * 180.02562 * 16 15 14 18 18 H 1.07992 * 120.00599 * 205.16964 * 17 16 15 19 19 C 1.39931 * 119.99424 * 25.17278 * 17 16 15 20 20 N 1.30831 * 120.00534 * 16.80301 * 19 17 16 21 21 Si 1.86798 * 119.99815 * 196.80749 * 19 17 16 22 22 H 1.48502 * 109.47186 * 359.97438 * 21 19 17 23 23 H 1.48504 * 109.47428 * 119.99993 * 21 19 17 24 24 H 1.48509 * 109.47176 * 239.99977 * 21 19 17 25 25 C 1.38244 * 119.94894 * 145.79934 * 12 11 9 26 26 H 1.08999 * 109.46484 * 60.00355 * 1 2 3 27 27 H 1.08999 * 109.46907 * 180.02562 * 1 2 3 28 28 H 1.08998 * 109.46986 * 300.00099 * 1 2 3 29 29 H 1.08998 * 109.47306 * 239.99458 * 2 1 3 30 30 H 1.09004 * 109.47289 * 120.00013 * 2 1 3 31 31 H 0.96703 * 114.00593 * 299.99855 * 5 3 2 32 32 H 1.08999 * 109.47062 * 59.99040 * 8 6 3 33 33 H 1.08992 * 109.47599 * 180.02562 * 8 6 3 34 34 H 1.09002 * 109.46555 * 300.00046 * 8 6 3 35 35 H 0.97000 * 120.00308 * 354.90152 * 11 9 6 36 36 H 1.08002 * 119.78207 * 0.02647 * 13 12 11 37 37 H 1.07993 * 119.84076 * 180.26272 * 14 13 12 38 38 H 1.07993 * 120.05393 * 179.76656 * 15 14 13 39 39 H 0.97005 * 120.00409 * 179.97438 * 20 19 17 40 40 H 1.08003 * 120.15740 * 359.95582 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6055 1.9816 0.8418 5 8 1.6621 2.0813 -1.2210 6 6 3.5648 1.4443 0.1257 7 1 3.9995 0.9052 -0.7160 8 6 3.9696 0.7603 1.4331 9 6 4.0673 2.8651 0.1251 10 8 3.2828 3.7856 0.0336 11 7 5.3881 3.1129 0.2273 12 6 5.8644 4.4243 0.1196 13 6 5.2379 5.3232 -0.7405 14 6 5.6978 6.6247 -0.8512 15 6 6.7871 7.0416 -0.1194 16 6 7.4336 6.1429 0.7496 17 6 8.5526 6.5639 1.5049 18 1 9.2814 5.8406 1.8394 19 6 8.7154 7.9178 1.8188 20 7 7.7033 8.7401 1.7136 21 14 10.3780 8.5511 2.3880 22 1 11.3497 7.4287 2.4230 23 1 10.8593 9.5939 1.4466 24 1 10.2467 9.1341 3.7475 25 6 6.9595 4.8240 0.8626 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5138 0.8900 29 1 1.8934 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 2.0143 1.6542 -2.0139 32 1 3.6062 -0.2673 1.4332 33 1 5.0558 0.7620 1.5229 34 1 3.5350 1.2994 2.2749 35 1 6.0086 2.3822 0.3754 36 1 4.3852 5.0042 -1.3216 37 1 5.2023 7.3149 -1.5178 38 1 7.1445 8.0565 -0.2118 39 1 7.8161 9.6786 1.9316 40 1 7.4483 4.1266 1.5269 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909367640.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:04 Heat of formation + Delta-G solvation = -105.455109 kcal Electronic energy + Delta-G solvation = -21226.833758 eV Core-core repulsion = 18004.642539 eV Total energy + Delta-G solvation = -3222.191218 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -41.46622 -39.46081 -38.31534 -36.09819 -35.08764 -34.40774 -32.83831 -31.77944 -29.87785 -27.19494 -26.87827 -25.30889 -23.11779 -22.76528 -21.96384 -20.91223 -19.43232 -18.25700 -17.58999 -17.36133 -16.80508 -16.50313 -16.38689 -15.87698 -15.53975 -15.27995 -14.83640 -14.64177 -14.22981 -14.08673 -13.57410 -13.44085 -13.31672 -12.99219 -12.90973 -12.86195 -12.73786 -12.71814 -12.39728 -12.23599 -11.92515 -11.70205 -11.56857 -11.46215 -11.10510 -10.95304 -10.81275 -10.42944 -9.42929 -8.76204 -8.60031 -6.36557 0.88299 0.95960 1.39736 1.49990 1.55631 1.85378 2.19406 2.27195 2.75459 3.49981 3.56849 3.68925 3.74816 4.09591 4.21686 4.27568 4.31716 4.42944 4.61116 4.66560 4.76875 4.84487 4.87180 5.00054 5.03578 5.05407 5.11332 5.14083 5.23110 5.25203 5.34163 5.39452 5.44462 5.75597 5.84964 6.07837 6.11218 6.29921 6.63785 6.73951 6.92234 6.94492 6.98988 7.38243 8.34690 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.040928 B = 0.003468 C = 0.003305 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 683.960094 B = 8070.924244 C = 8469.801491 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.146 4.146 3 C 0.125 3.875 4 H 0.071 0.929 5 O -0.571 6.571 6 C -0.129 4.129 7 H 0.131 0.869 8 C -0.146 4.146 9 C 0.502 3.498 10 O -0.555 6.555 11 N -0.662 5.662 12 C 0.164 3.836 13 C -0.239 4.239 14 C -0.099 4.099 15 C -0.197 4.197 16 C 0.095 3.905 17 C -0.495 4.495 18 H 0.082 0.918 19 C 0.032 3.968 20 N -0.829 5.829 21 Si 0.987 3.013 22 H -0.254 1.254 23 H -0.265 1.265 24 H -0.268 1.268 25 C -0.255 4.255 26 H 0.047 0.953 27 H 0.070 0.930 28 H 0.044 0.956 29 H 0.086 0.914 30 H 0.094 0.906 31 H 0.380 0.620 32 H 0.105 0.895 33 H 0.074 0.926 34 H 0.048 0.952 35 H 0.417 0.583 36 H 0.099 0.901 37 H 0.106 0.894 38 H 0.103 0.897 39 H 0.288 0.712 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.210 -18.256 -1.921 19.082 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.184 4.184 3 C 0.066 3.934 4 H 0.089 0.911 5 O -0.377 6.377 6 C -0.151 4.151 7 H 0.149 0.851 8 C -0.203 4.203 9 C 0.291 3.709 10 O -0.431 6.431 11 N -0.308 5.308 12 C 0.071 3.929 13 C -0.261 4.261 14 C -0.118 4.118 15 C -0.217 4.217 16 C 0.092 3.908 17 C -0.525 4.525 18 H 0.100 0.900 19 C -0.183 4.183 20 N -0.455 5.455 21 Si 0.807 3.193 22 H -0.177 1.177 23 H -0.190 1.190 24 H -0.193 1.193 25 C -0.277 4.277 26 H 0.067 0.933 27 H 0.089 0.911 28 H 0.063 0.937 29 H 0.105 0.895 30 H 0.112 0.888 31 H 0.228 0.772 32 H 0.123 0.877 33 H 0.093 0.907 34 H 0.067 0.933 35 H 0.255 0.745 36 H 0.117 0.883 37 H 0.124 0.876 38 H 0.121 0.879 39 H 0.098 0.902 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -6.199 -17.023 -1.542 18.182 hybrid contribution 1.017 0.344 -0.022 1.074 sum -5.181 -16.679 -1.565 17.536 Atomic orbital electron populations 1.21707 0.95544 1.02020 1.01520 1.22268 0.96748 0.94686 1.04683 1.21757 0.90355 0.93951 0.87382 0.91071 1.86715 1.76619 1.58213 1.16118 1.22170 0.98580 0.90597 1.03718 0.85127 1.21886 1.02836 1.01984 0.93595 1.21550 0.81335 0.92975 0.75052 1.90751 1.55966 1.47989 1.48417 1.43507 1.08427 1.07135 1.71760 1.17482 0.94941 0.85050 0.95442 1.20424 1.04709 0.94857 1.06077 1.20804 0.96590 0.95320 0.99124 1.21299 0.99619 1.00445 1.00287 1.17769 0.91973 0.91122 0.89963 1.19838 1.07543 0.93941 1.31144 0.89997 1.26842 1.01611 0.96567 0.93230 1.69915 1.32771 1.06118 1.36647 0.85099 0.77054 0.78821 0.78330 1.17705 1.19016 1.19252 1.20881 1.02291 0.98122 1.06417 0.93339 0.91107 0.93717 0.89524 0.88786 0.77159 0.87681 0.90731 0.93280 0.74484 0.88273 0.87618 0.87856 0.90179 0.87095 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.25 9.81 71.98 0.71 -1.54 16 2 C -0.15 -1.90 5.40 30.59 0.17 -1.74 16 3 C 0.13 2.70 2.09 30.59 0.06 2.77 16 4 H 0.07 1.96 8.10 -2.39 -0.02 1.95 16 5 O -0.57 -15.02 11.77 -131.51 -1.55 -16.57 16 6 C -0.13 -2.59 2.51 -11.54 -0.03 -2.62 16 7 H 0.13 1.80 8.14 -2.39 -0.02 1.78 16 8 C -0.15 -2.17 8.74 71.98 0.63 -1.54 16 9 C 0.50 16.94 6.74 87.66 0.59 17.53 16 10 O -0.55 -24.92 13.03 14.40 0.19 -24.73 16 11 N -0.66 -22.86 5.26 -303.65 -1.60 -24.46 16 12 C 0.16 7.59 6.25 38.10 0.24 7.82 16 13 C -0.24 -11.98 8.66 22.58 0.20 -11.78 16 14 C -0.10 -5.15 10.02 22.20 0.22 -4.93 16 15 C -0.20 -10.96 8.69 22.75 0.20 -10.76 16 16 C 0.09 5.24 5.57 -21.31 -0.12 5.13 16 17 C -0.50 -26.80 9.05 23.46 0.21 -26.59 16 18 H 0.08 4.19 7.90 -2.91 -0.02 4.17 16 19 C 0.03 1.64 5.16 85.25 0.44 2.08 16 20 N -0.83 -44.69 10.94 21.82 0.24 -44.45 16 21 Si 0.99 38.32 29.59 68.60 2.03 40.35 16 22 H -0.25 -9.46 7.11 99.48 0.71 -8.76 16 23 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 24 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 25 C -0.26 -12.62 9.70 22.85 0.22 -12.40 16 26 H 0.05 0.85 7.82 -2.39 -0.02 0.83 16 27 H 0.07 0.79 8.14 -2.39 -0.02 0.77 16 28 H 0.04 0.74 8.14 -2.39 -0.02 0.73 16 29 H 0.09 0.80 8.14 -2.39 -0.02 0.78 16 30 H 0.09 0.89 6.17 -2.39 -0.01 0.88 16 31 H 0.38 6.71 9.05 -74.05 -0.67 6.04 16 32 H 0.10 0.88 6.32 -2.39 -0.02 0.87 16 33 H 0.07 0.99 7.46 -2.39 -0.02 0.97 16 34 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 35 H 0.42 10.80 8.10 -92.71 -0.75 10.04 16 36 H 0.10 4.96 6.48 -2.91 -0.02 4.94 16 37 H 0.11 4.97 8.06 -2.91 -0.02 4.94 16 38 H 0.10 5.96 6.17 -2.91 -0.02 5.94 16 39 H 0.29 13.98 8.30 -92.70 -0.77 13.21 16 40 H 0.11 4.95 8.06 -2.91 -0.02 4.93 16 Total: -1.00 -73.78 328.97 2.69 -71.09 By element: Atomic # 1 Polarization: 37.71 SS G_CDS: -0.36 Total: 37.35 kcal Atomic # 6 Polarization: -42.32 SS G_CDS: 3.73 Total: -38.58 kcal Atomic # 7 Polarization: -67.55 SS G_CDS: -1.36 Total: -68.91 kcal Atomic # 8 Polarization: -39.94 SS G_CDS: -1.36 Total: -41.30 kcal Atomic # 14 Polarization: 38.32 SS G_CDS: 2.03 Total: 40.35 kcal Total: -73.78 2.69 -71.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909367640.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.365 kcal (2) G-P(sol) polarization free energy of solvation -73.779 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.688 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.091 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.455 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds