Wall clock time and date at job start Mon Mar 30 2020 02:57:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47016 * 2 1 4 4 H 1.09006 * 109.46691 * 54.99614 * 3 2 1 5 5 O 1.42901 * 109.46849 * 294.99840 * 3 2 1 6 6 C 1.52994 * 109.46834 * 174.99910 * 3 2 1 7 7 H 1.08997 * 109.47572 * 304.99384 * 6 3 2 8 8 C 1.52996 * 109.47178 * 65.00303 * 6 3 2 9 9 C 1.50701 * 109.46609 * 184.99811 * 6 3 2 10 10 O 1.21287 * 120.00386 * 0.02562 * 9 6 3 11 11 N 1.34782 * 119.99903 * 179.97438 * 9 6 3 12 12 C 1.39937 * 120.00233 * 174.89206 * 11 9 6 13 13 C 1.39289 * 119.94293 * 325.55277 * 12 11 9 14 14 C 1.38491 * 120.42665 * 179.76358 * 13 12 11 15 15 C 1.37691 * 120.31991 * 0.51223 * 14 13 12 16 16 C 1.40738 * 119.88306 * 359.74495 * 15 14 13 17 17 C 1.41410 * 120.20553 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00345 * 25.13538 * 17 16 15 19 19 C 1.39932 * 119.99814 * 205.12822 * 17 16 15 20 20 N 1.30831 * 120.00103 * 16.79214 * 19 17 16 21 21 Si 1.86794 * 120.00159 * 196.79046 * 19 17 16 22 22 H 1.48499 * 109.47191 * 90.00008 * 21 19 17 23 23 H 1.48502 * 109.47443 * 209.99943 * 21 19 17 24 24 H 1.48504 * 109.47247 * 330.00415 * 21 19 17 25 25 C 1.38238 * 119.95160 * 145.82765 * 12 11 9 26 26 H 1.09003 * 109.47193 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47277 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47127 * 59.99972 * 1 2 3 29 29 H 1.08991 * 109.47145 * 240.00293 * 2 1 3 30 30 H 1.08998 * 109.46813 * 119.99326 * 2 1 3 31 31 H 0.96696 * 114.00355 * 300.00346 * 5 3 2 32 32 H 1.09002 * 109.46964 * 299.98969 * 8 6 3 33 33 H 1.08996 * 109.47276 * 59.99527 * 8 6 3 34 34 H 1.09003 * 109.47051 * 180.02562 * 8 6 3 35 35 H 0.97001 * 119.99453 * 354.89208 * 11 9 6 36 36 H 1.08000 * 119.78796 * 0.02562 * 13 12 11 37 37 H 1.08000 * 119.83918 * 180.23894 * 14 13 12 38 38 H 1.07998 * 120.05098 * 179.76514 * 15 14 13 39 39 H 0.97000 * 120.00199 * 179.97438 * 20 19 17 40 40 H 1.08006 * 120.15713 * 359.95831 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 3.5648 1.4444 0.1257 7 1 3.8570 0.8802 1.0114 8 6 4.1797 0.7977 -1.1170 9 6 4.0568 2.8634 0.2492 10 8 3.2658 3.7828 0.2382 11 7 5.3760 3.1109 0.3729 12 6 5.8428 4.4301 0.3800 13 6 5.2090 5.3961 -0.3981 14 6 5.6595 6.7056 -0.3949 15 6 6.7465 7.0649 0.3703 16 6 7.4001 6.0985 1.1573 17 6 8.5167 6.4601 1.9461 18 1 8.6355 7.4808 2.2782 19 6 9.4677 5.4952 2.2965 20 7 9.5184 4.3606 1.6470 21 14 10.6647 5.8270 3.6915 22 1 10.0775 5.3539 4.9708 23 1 11.9371 5.1057 3.4343 24 1 10.9313 7.2853 3.7788 25 6 6.9356 4.7714 1.1548 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5137 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.0141 1.6542 -2.0139 32 1 3.8239 -0.2287 -1.2063 33 1 3.8875 1.3620 -2.0026 34 1 5.2661 0.7986 -1.0272 35 1 6.0017 2.3745 0.4570 36 1 4.3581 5.1229 -1.0046 37 1 5.1586 7.4477 -0.9988 38 1 7.0965 8.0866 0.3666 39 1 10.1779 3.6919 1.8896 40 1 7.4300 4.0222 1.7555 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909367644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:11 Heat of formation + Delta-G solvation = -84.903641 kcal Electronic energy + Delta-G solvation = -21423.161839 eV Core-core repulsion = 18201.861799 eV Total energy + Delta-G solvation = -3221.300040 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.08001 -38.10550 -36.84077 -34.21240 -33.46446 -33.03994 -32.11857 -29.51456 -28.26120 -26.54352 -25.23633 -24.09364 -21.66402 -21.15099 -20.35425 -19.30493 -17.42196 -17.02578 -16.33513 -16.00315 -15.66208 -15.04045 -14.83166 -14.59853 -14.34776 -13.76256 -13.50299 -12.99997 -12.76840 -12.64075 -12.43706 -12.20180 -12.08836 -11.94110 -11.68446 -11.46718 -11.20814 -11.13641 -11.08023 -10.70212 -10.69532 -10.57734 -9.98298 -9.95415 -9.70153 -9.34278 -9.13668 -8.84010 -7.35721 -6.98234 -6.67295 -4.35800 2.62498 2.86824 3.07088 3.10904 3.22269 3.40904 3.66259 3.93915 4.37391 4.57580 4.64851 4.71239 4.89147 4.98579 5.05173 5.15623 5.40981 5.48836 5.59051 5.66213 5.70755 5.75424 5.81445 5.91410 6.09651 6.17191 6.31304 6.68116 6.73707 6.93826 7.07489 7.10715 7.27640 7.65721 7.70295 7.73191 7.96539 8.05232 8.20313 8.36371 8.60062 8.82543 8.90616 8.99097 10.20118 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027860 B = 0.003967 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.794731 B = 7057.104640 C = 7666.848498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.157 4.157 3 C 0.128 3.872 4 H 0.104 0.896 5 O -0.542 6.542 6 C -0.147 4.147 7 H 0.101 0.899 8 C -0.151 4.151 9 C 0.508 3.492 10 O -0.510 6.510 11 N -0.667 5.667 12 C 0.146 3.854 13 C -0.225 4.225 14 C -0.087 4.087 15 C -0.229 4.229 16 C 0.120 3.880 17 C -0.464 4.464 18 H 0.078 0.922 19 C 0.076 3.924 20 N -0.801 5.801 21 Si 0.908 3.092 22 H -0.269 1.269 23 H -0.279 1.279 24 H -0.263 1.263 25 C -0.183 4.183 26 H 0.051 0.949 27 H 0.054 0.946 28 H 0.061 0.939 29 H 0.067 0.933 30 H 0.070 0.930 31 H 0.364 0.636 32 H 0.068 0.932 33 H 0.064 0.936 34 H 0.067 0.933 35 H 0.400 0.600 36 H 0.101 0.899 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.278 0.722 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.292 -12.039 -2.686 14.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.194 4.194 3 C 0.068 3.932 4 H 0.122 0.878 5 O -0.347 6.347 6 C -0.168 4.168 7 H 0.119 0.881 8 C -0.208 4.208 9 C 0.294 3.706 10 O -0.384 6.384 11 N -0.311 5.311 12 C 0.054 3.946 13 C -0.246 4.246 14 C -0.105 4.105 15 C -0.249 4.249 16 C 0.117 3.883 17 C -0.494 4.494 18 H 0.096 0.904 19 C -0.140 4.140 20 N -0.427 5.427 21 Si 0.733 3.267 22 H -0.194 1.194 23 H -0.204 1.204 24 H -0.186 1.186 25 C -0.204 4.204 26 H 0.070 0.930 27 H 0.073 0.927 28 H 0.080 0.920 29 H 0.085 0.915 30 H 0.089 0.911 31 H 0.211 0.789 32 H 0.087 0.913 33 H 0.083 0.917 34 H 0.086 0.914 35 H 0.234 0.766 36 H 0.120 0.880 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.061 -11.216 -2.317 14.604 hybrid contribution 1.407 -0.784 0.370 1.653 sum -7.654 -12.000 -1.947 14.366 Atomic orbital electron populations 1.21693 0.95065 1.01177 1.02627 1.22301 0.97216 0.97249 1.02681 1.21706 0.90479 0.92181 0.88857 0.87811 1.86727 1.76101 1.56950 1.14896 1.22094 0.98465 0.94984 1.01303 0.88092 1.21822 1.01718 1.00514 0.96750 1.20379 0.82410 0.90749 0.77061 1.90740 1.54421 1.45772 1.47427 1.43525 1.07366 1.07897 1.72327 1.17614 0.96302 0.82583 0.98066 1.20317 1.04393 0.93384 1.06529 1.20429 0.96462 0.94828 0.98827 1.21041 1.01079 0.98997 1.03746 1.17361 0.91047 0.90608 0.89292 1.19542 1.04960 0.96402 1.28495 0.90391 1.25867 0.97863 0.94394 0.95881 1.69819 1.31590 1.06756 1.34516 0.86322 0.79141 0.79772 0.81513 1.19390 1.20409 1.18650 1.21067 0.98080 0.98476 1.02810 0.93013 0.92668 0.92005 0.91464 0.91096 0.78928 0.91339 0.91748 0.91373 0.76617 0.88044 0.89076 0.88900 0.91124 0.86057 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.81 37.16 0.36 -0.92 16 2 C -0.16 -1.34 5.24 -26.73 -0.14 -1.48 16 3 C 0.13 1.52 2.26 -26.73 -0.06 1.46 16 4 H 0.10 1.45 7.96 -51.93 -0.41 1.03 16 5 O -0.54 -7.34 12.01 -49.64 -0.60 -7.94 16 6 C -0.15 -1.76 2.56 -91.78 -0.23 -1.99 16 7 H 0.10 1.02 8.14 -51.93 -0.42 0.60 16 8 C -0.15 -1.43 8.43 37.16 0.31 -1.12 16 9 C 0.51 9.08 6.76 -10.98 -0.07 9.00 16 10 O -0.51 -11.28 13.17 -8.86 -0.12 -11.40 16 11 N -0.67 -12.65 5.19 -9.91 -0.05 -12.71 16 12 C 0.15 3.48 6.25 -83.77 -0.52 2.95 16 13 C -0.23 -5.50 8.66 -39.10 -0.34 -5.84 16 14 C -0.09 -2.08 10.02 -39.69 -0.40 -2.48 16 15 C -0.23 -5.80 9.79 -38.84 -0.38 -6.18 16 16 C 0.12 3.23 5.57 -106.85 -0.59 2.64 16 17 C -0.46 -12.35 9.06 -37.74 -0.34 -12.69 16 18 H 0.08 2.01 7.90 -52.49 -0.41 1.59 16 19 C 0.08 1.90 5.16 -17.34 -0.09 1.81 16 20 N -0.80 -20.16 10.94 55.55 0.61 -19.56 16 21 Si 0.91 18.59 29.59 -169.99 -5.03 13.56 16 22 H -0.27 -5.46 7.11 56.52 0.40 -5.05 16 23 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 24 H -0.26 -5.35 7.11 56.52 0.40 -4.94 16 25 C -0.18 -4.71 8.60 -38.69 -0.33 -5.04 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.58 7.82 -51.93 -0.41 0.17 16 29 H 0.07 0.49 6.81 -51.93 -0.35 0.13 16 30 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 31 H 0.36 3.65 7.19 45.56 0.33 3.97 16 32 H 0.07 0.48 6.68 -51.93 -0.35 0.13 16 33 H 0.06 0.64 6.72 -51.93 -0.35 0.29 16 34 H 0.07 0.65 7.69 -51.93 -0.40 0.25 16 35 H 0.40 6.42 8.40 -40.82 -0.34 6.07 16 36 H 0.10 2.48 6.48 -52.49 -0.34 2.14 16 37 H 0.09 1.94 8.06 -52.49 -0.42 1.52 16 38 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 39 H 0.28 6.35 8.30 -40.82 -0.34 6.02 16 40 H 0.12 3.15 6.17 -52.48 -0.32 2.83 16 LS Contribution 327.16 15.07 4.93 4.93 Total: -1.00 -31.36 327.16 -8.12 -39.48 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -5.03 Total: 13.51 kcal Atomic # 6 Polarization: -17.05 SS G_CDS: -2.83 Total: -19.88 kcal Atomic # 7 Polarization: -32.82 SS G_CDS: 0.56 Total: -32.26 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.71 Total: -19.34 kcal Atomic # 14 Polarization: 18.59 SS G_CDS: -5.03 Total: 13.56 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -31.36 -8.12 -39.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909367644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.421 kcal (2) G-P(sol) polarization free energy of solvation -31.364 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.119 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.483 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.904 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds