Wall clock time and date at job start Mon Mar 30 2020 02:57:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53009 * 109.47016 * 2 1 4 4 H 1.09006 * 109.46691 * 54.99614 * 3 2 1 5 5 O 1.42901 * 109.46849 * 294.99840 * 3 2 1 6 6 C 1.52994 * 109.46834 * 174.99910 * 3 2 1 7 7 H 1.08997 * 109.47572 * 304.99384 * 6 3 2 8 8 C 1.52996 * 109.47178 * 65.00303 * 6 3 2 9 9 C 1.50701 * 109.46609 * 184.99811 * 6 3 2 10 10 O 1.21287 * 120.00386 * 0.02562 * 9 6 3 11 11 N 1.34782 * 119.99903 * 179.97438 * 9 6 3 12 12 C 1.39937 * 120.00233 * 174.89206 * 11 9 6 13 13 C 1.39289 * 119.94293 * 325.55277 * 12 11 9 14 14 C 1.38491 * 120.42665 * 179.76358 * 13 12 11 15 15 C 1.37691 * 120.31991 * 0.51223 * 14 13 12 16 16 C 1.40738 * 119.88306 * 359.74495 * 15 14 13 17 17 C 1.41410 * 120.20553 * 180.02562 * 16 15 14 18 18 H 1.07998 * 120.00345 * 25.13538 * 17 16 15 19 19 C 1.39932 * 119.99814 * 205.12822 * 17 16 15 20 20 N 1.30831 * 120.00103 * 16.79214 * 19 17 16 21 21 Si 1.86794 * 120.00159 * 196.79046 * 19 17 16 22 22 H 1.48499 * 109.47191 * 90.00008 * 21 19 17 23 23 H 1.48502 * 109.47443 * 209.99943 * 21 19 17 24 24 H 1.48504 * 109.47247 * 330.00415 * 21 19 17 25 25 C 1.38238 * 119.95160 * 145.82765 * 12 11 9 26 26 H 1.09003 * 109.47193 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47277 * 300.00075 * 1 2 3 28 28 H 1.09000 * 109.47127 * 59.99972 * 1 2 3 29 29 H 1.08991 * 109.47145 * 240.00293 * 2 1 3 30 30 H 1.08998 * 109.46813 * 119.99326 * 2 1 3 31 31 H 0.96696 * 114.00355 * 300.00346 * 5 3 2 32 32 H 1.09002 * 109.46964 * 299.98969 * 8 6 3 33 33 H 1.08996 * 109.47276 * 59.99527 * 8 6 3 34 34 H 1.09003 * 109.47051 * 180.02562 * 8 6 3 35 35 H 0.97001 * 119.99453 * 354.89208 * 11 9 6 36 36 H 1.08000 * 119.78796 * 0.02562 * 13 12 11 37 37 H 1.08000 * 119.83918 * 180.23894 * 14 13 12 38 38 H 1.07998 * 120.05098 * 179.76514 * 15 14 13 39 39 H 0.97000 * 120.00199 * 179.97438 * 20 19 17 40 40 H 1.08006 * 120.15713 * 359.95831 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 1 1.6052 1.9816 0.8418 5 8 1.6619 2.0814 -1.2211 6 6 3.5648 1.4444 0.1257 7 1 3.8570 0.8802 1.0114 8 6 4.1797 0.7977 -1.1170 9 6 4.0568 2.8634 0.2492 10 8 3.2658 3.7828 0.2382 11 7 5.3760 3.1109 0.3729 12 6 5.8428 4.4301 0.3800 13 6 5.2090 5.3961 -0.3981 14 6 5.6595 6.7056 -0.3949 15 6 6.7465 7.0649 0.3703 16 6 7.4001 6.0985 1.1573 17 6 8.5167 6.4601 1.9461 18 1 8.6355 7.4808 2.2782 19 6 9.4677 5.4952 2.2965 20 7 9.5184 4.3606 1.6470 21 14 10.6647 5.8270 3.6915 22 1 10.0775 5.3539 4.9708 23 1 11.9371 5.1057 3.4343 24 1 10.9313 7.2853 3.7788 25 6 6.9356 4.7714 1.1548 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3634 0.5139 0.8900 28 1 -0.3633 0.5138 -0.8900 29 1 1.8933 -0.5137 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.0141 1.6542 -2.0139 32 1 3.8239 -0.2287 -1.2063 33 1 3.8875 1.3620 -2.0026 34 1 5.2661 0.7986 -1.0272 35 1 6.0017 2.3745 0.4570 36 1 4.3581 5.1229 -1.0046 37 1 5.1586 7.4477 -0.9988 38 1 7.0965 8.0866 0.3666 39 1 10.1779 3.6919 1.8896 40 1 7.4300 4.0222 1.7555 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909367644.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:10 Heat of formation + Delta-G solvation = -105.041379 kcal Electronic energy + Delta-G solvation = -21424.035076 eV Core-core repulsion = 18201.861799 eV Total energy + Delta-G solvation = -3222.173278 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.48669 -39.51941 -38.37466 -35.95587 -35.15473 -34.11504 -33.01296 -31.45962 -30.02596 -27.37755 -27.17602 -25.19526 -23.16151 -22.79671 -21.69384 -20.77478 -19.24104 -18.40299 -17.59220 -17.26153 -16.92304 -16.62973 -16.49011 -15.96795 -15.52334 -15.19043 -14.94902 -14.51900 -14.26220 -14.13704 -13.51330 -13.40455 -13.30754 -13.02222 -12.84713 -12.81190 -12.71609 -12.64829 -12.40994 -12.26507 -11.82780 -11.73889 -11.58237 -11.56923 -11.14166 -10.95766 -10.82831 -10.45373 -9.34068 -8.84935 -8.54315 -6.36158 0.83256 1.03561 1.40268 1.51338 1.52537 1.83745 2.22437 2.26848 2.75371 3.49454 3.58596 3.70034 3.76450 4.01235 4.19842 4.27433 4.32768 4.45440 4.61480 4.71826 4.77732 4.83697 4.85776 4.88288 5.03102 5.10592 5.12288 5.16210 5.19019 5.24235 5.36425 5.39538 5.43826 5.79982 5.86628 6.02922 6.08070 6.34031 6.59018 6.76954 6.90467 6.93390 6.98049 7.36062 8.34303 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.027860 B = 0.003967 C = 0.003651 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1004.794731 B = 7057.104640 C = 7666.848498 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.146 4.146 3 C 0.126 3.874 4 H 0.074 0.926 5 O -0.568 6.568 6 C -0.133 4.133 7 H 0.129 0.871 8 C -0.148 4.148 9 C 0.504 3.496 10 O -0.556 6.556 11 N -0.663 5.663 12 C 0.152 3.848 13 C -0.241 4.241 14 C -0.086 4.086 15 C -0.251 4.251 16 C 0.092 3.908 17 C -0.499 4.499 18 H 0.075 0.925 19 C 0.039 3.961 20 N -0.821 5.821 21 Si 0.983 3.017 22 H -0.263 1.263 23 H -0.265 1.265 24 H -0.262 1.262 25 C -0.204 4.204 26 H 0.070 0.930 27 H 0.044 0.956 28 H 0.049 0.951 29 H 0.089 0.911 30 H 0.087 0.913 31 H 0.378 0.622 32 H 0.104 0.896 33 H 0.057 0.943 34 H 0.068 0.932 35 H 0.414 0.586 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.289 0.711 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.818 -14.357 -2.432 16.527 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.183 4.183 3 C 0.067 3.933 4 H 0.092 0.908 5 O -0.375 6.375 6 C -0.155 4.155 7 H 0.146 0.854 8 C -0.205 4.205 9 C 0.293 3.707 10 O -0.433 6.433 11 N -0.308 5.308 12 C 0.059 3.941 13 C -0.262 4.262 14 C -0.104 4.104 15 C -0.271 4.271 16 C 0.090 3.910 17 C -0.529 4.529 18 H 0.093 0.907 19 C -0.177 4.177 20 N -0.446 5.446 21 Si 0.803 3.197 22 H -0.188 1.188 23 H -0.190 1.190 24 H -0.186 1.186 25 C -0.225 4.225 26 H 0.089 0.911 27 H 0.063 0.937 28 H 0.069 0.931 29 H 0.108 0.892 30 H 0.106 0.894 31 H 0.227 0.773 32 H 0.123 0.877 33 H 0.076 0.924 34 H 0.087 0.913 35 H 0.251 0.749 36 H 0.117 0.883 37 H 0.135 0.865 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.590 -13.578 -2.087 16.202 hybrid contribution 1.204 -0.075 0.240 1.230 sum -7.386 -13.654 -1.847 15.633 Atomic orbital electron populations 1.21705 0.95375 1.02037 1.01605 1.22227 0.96859 0.94685 1.04544 1.21718 0.90149 0.93971 0.87491 0.90770 1.86688 1.76595 1.58210 1.16049 1.22145 0.98507 0.90888 1.03914 0.85357 1.21868 1.01667 1.02120 0.94827 1.21530 0.81237 0.92983 0.74990 1.90716 1.55359 1.48004 1.49235 1.43552 1.08464 1.06521 1.72266 1.17693 0.95238 0.84665 0.96523 1.20453 1.04616 0.93956 1.07136 1.20727 0.95920 0.95421 0.98377 1.21207 1.01972 0.99338 1.04559 1.17773 0.91761 0.91622 0.89889 1.19789 1.06022 0.97044 1.30003 0.90710 1.26695 0.99250 0.93864 0.97856 1.69845 1.32244 1.07366 1.35192 0.85197 0.76965 0.79633 0.77856 1.18821 1.18969 1.18573 1.21024 0.99260 0.98157 1.04087 0.91139 0.93699 0.93144 0.89248 0.89400 0.77312 0.87703 0.92385 0.91284 0.74897 0.88260 0.86532 0.88144 0.90018 0.86746 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.30 9.81 71.98 0.71 -1.59 16 2 C -0.15 -2.03 5.24 30.60 0.16 -1.87 16 3 C 0.13 2.83 2.26 30.60 0.07 2.90 16 4 H 0.07 2.09 7.96 -2.38 -0.02 2.07 16 5 O -0.57 -15.03 12.01 -135.21 -1.62 -16.65 16 6 C -0.13 -2.91 2.56 -11.54 -0.03 -2.94 16 7 H 0.13 2.16 8.14 -2.39 -0.02 2.14 16 8 C -0.15 -2.34 8.43 71.98 0.61 -1.73 16 9 C 0.50 17.82 6.76 87.66 0.59 18.41 16 10 O -0.56 -25.11 13.17 10.72 0.14 -24.97 16 11 N -0.66 -25.02 5.19 -303.64 -1.58 -26.60 16 12 C 0.15 7.37 6.25 38.10 0.24 7.61 16 13 C -0.24 -11.98 8.66 22.58 0.20 -11.78 16 14 C -0.09 -4.19 10.02 22.20 0.22 -3.97 16 15 C -0.25 -13.08 9.79 22.75 0.22 -12.85 16 16 C 0.09 5.13 5.57 -21.31 -0.12 5.01 16 17 C -0.50 -27.15 9.06 23.46 0.21 -26.94 16 18 H 0.07 3.96 7.90 -2.91 -0.02 3.93 16 19 C 0.04 1.91 5.16 85.25 0.44 2.35 16 20 N -0.82 -41.26 10.94 21.82 0.24 -41.02 16 21 Si 0.98 37.65 29.59 68.60 2.03 39.68 16 22 H -0.26 -9.83 7.11 99.48 0.71 -9.12 16 23 H -0.27 -9.52 7.11 99.48 0.71 -8.82 16 24 H -0.26 -9.93 7.11 99.48 0.71 -9.22 16 25 C -0.20 -10.75 8.60 22.85 0.20 -10.56 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.04 0.76 8.14 -2.39 -0.02 0.75 16 28 H 0.05 0.88 7.82 -2.39 -0.02 0.86 16 29 H 0.09 0.89 6.81 -2.39 -0.02 0.87 16 30 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 31 H 0.38 7.05 7.19 -74.06 -0.53 6.52 16 32 H 0.10 0.95 6.68 -2.39 -0.02 0.94 16 33 H 0.06 1.01 6.72 -2.39 -0.02 1.00 16 34 H 0.07 1.12 7.69 -2.39 -0.02 1.10 16 35 H 0.41 12.95 8.40 -92.71 -0.78 12.17 16 36 H 0.10 4.95 6.48 -2.91 -0.02 4.93 16 37 H 0.12 4.95 8.06 -2.91 -0.02 4.92 16 38 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 39 H 0.29 12.97 8.30 -92.71 -0.77 12.20 16 40 H 0.11 6.09 6.17 -2.91 -0.02 6.07 16 Total: -1.00 -70.24 327.16 2.68 -67.57 By element: Atomic # 1 Polarization: 40.20 SS G_CDS: -0.25 Total: 39.95 kcal Atomic # 6 Polarization: -41.66 SS G_CDS: 3.71 Total: -37.95 kcal Atomic # 7 Polarization: -66.28 SS G_CDS: -1.34 Total: -67.62 kcal Atomic # 8 Polarization: -40.14 SS G_CDS: -1.48 Total: -41.62 kcal Atomic # 14 Polarization: 37.65 SS G_CDS: 2.03 Total: 39.68 kcal Total: -70.24 2.68 -67.57 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909367644.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.475 kcal (2) G-P(sol) polarization free energy of solvation -70.243 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.677 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.566 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.041 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds