Wall clock time and date at job start Mon Mar 30 2020 02:57:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46736 * 2 1 4 4 H 1.09007 * 109.47049 * 304.99825 * 3 2 1 5 5 O 1.42896 * 109.47420 * 65.00249 * 3 2 1 6 6 C 1.53001 * 109.47217 * 185.00353 * 3 2 1 7 7 H 1.09001 * 109.47034 * 299.99917 * 6 3 2 8 8 C 1.53006 * 109.47304 * 59.99676 * 6 3 2 9 9 C 1.50695 * 109.47357 * 179.97438 * 6 3 2 10 10 O 1.21281 * 119.99961 * 0.02562 * 9 6 3 11 11 N 1.34780 * 120.00176 * 180.27049 * 9 6 3 12 12 C 1.39932 * 120.00432 * 174.61499 * 11 9 6 13 13 C 1.39291 * 119.94584 * 325.55369 * 12 11 9 14 14 C 1.38484 * 120.42924 * 179.75906 * 13 12 11 15 15 C 1.37684 * 120.32223 * 0.52017 * 14 13 12 16 16 C 1.40743 * 119.88220 * 359.73554 * 15 14 13 17 17 C 1.41406 * 120.20686 * 180.02562 * 16 15 14 18 18 H 1.08006 * 120.00264 * 25.13050 * 17 16 15 19 19 C 1.39932 * 119.99813 * 205.13594 * 17 16 15 20 20 N 1.30828 * 120.00407 * 16.78457 * 19 17 16 21 21 Si 1.86802 * 119.99954 * 196.79044 * 19 17 16 22 22 H 1.48499 * 109.47447 * 59.99486 * 21 19 17 23 23 H 1.48506 * 109.47100 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46848 * 299.99449 * 21 19 17 25 25 C 1.38241 * 119.95314 * 145.82878 * 12 11 9 26 26 H 1.09001 * 109.46740 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47042 * 299.99874 * 1 2 3 28 28 H 1.08999 * 109.47520 * 60.00298 * 1 2 3 29 29 H 1.08999 * 109.46799 * 240.00549 * 2 1 3 30 30 H 1.08999 * 109.47520 * 119.99702 * 2 1 3 31 31 H 0.96701 * 114.00090 * 60.00101 * 5 3 2 32 32 H 1.09001 * 109.46878 * 60.00145 * 8 6 3 33 33 H 1.08997 * 109.47305 * 180.02562 * 8 6 3 34 34 H 1.08996 * 109.46754 * 300.00570 * 8 6 3 35 35 H 0.97010 * 119.99721 * 354.62214 * 11 9 6 36 36 H 1.08001 * 119.78458 * 0.02562 * 13 12 11 37 37 H 1.08005 * 119.84120 * 180.23373 * 14 13 12 38 38 H 1.08000 * 120.05680 * 179.76932 * 15 14 13 39 39 H 0.96997 * 120.00726 * 180.02562 * 20 19 17 40 40 H 1.08008 * 120.15573 * 359.95746 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8419 5 8 1.6619 2.0814 1.2210 6 6 3.5647 1.4445 -0.1258 7 1 3.9994 0.9055 0.7160 8 6 3.9695 0.7604 -1.4332 9 6 4.0669 2.8653 -0.1264 10 8 3.2825 3.7858 -0.0348 11 7 5.3873 3.1133 -0.2338 12 6 5.8448 4.4308 -0.3479 13 6 5.0868 5.3727 -1.0396 14 6 5.5276 6.6804 -1.1544 15 6 6.7263 7.0616 -0.5946 16 6 7.5056 6.1196 0.1027 17 6 8.7376 6.5037 0.6808 18 1 8.9075 7.5345 0.9548 19 6 9.7367 5.5483 0.8977 20 7 9.6811 4.3931 0.2861 21 14 11.1499 5.9222 2.0607 22 1 10.6145 6.1961 3.4184 23 1 12.0669 4.7554 2.1167 24 1 11.8916 7.1122 1.5717 25 6 7.0511 4.7943 0.2211 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0142 1.6543 2.0139 32 1 3.5348 1.2994 -2.2750 33 1 5.0558 0.7614 -1.5226 34 1 3.6062 -0.2672 -1.4331 35 1 6.0206 2.3784 -0.2322 36 1 4.1470 5.0822 -1.4856 37 1 4.9304 7.4039 -1.6897 38 1 7.0678 8.0818 -0.6899 39 1 10.3734 3.7306 0.4368 40 1 7.6415 4.0638 0.7544 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000909367645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:14 Heat of formation + Delta-G solvation = -84.754784 kcal Electronic energy + Delta-G solvation = -21394.714190 eV Core-core repulsion = 18173.420605 eV Total energy + Delta-G solvation = -3221.293585 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.02762 -38.01731 -36.81095 -34.22066 -33.73929 -33.14788 -32.00152 -29.51762 -28.28214 -26.04138 -25.24070 -24.17413 -21.69340 -21.18041 -20.53450 -19.36454 -17.40713 -17.04419 -16.50351 -15.72701 -15.43257 -15.16315 -14.78700 -14.44856 -14.43876 -13.67908 -13.51128 -13.02325 -12.78974 -12.64105 -12.45840 -12.23727 -12.05707 -11.99674 -11.67734 -11.46688 -11.20691 -11.11055 -11.05044 -10.71453 -10.68643 -10.59262 -9.99798 -9.91923 -9.70003 -9.34197 -9.12778 -8.82037 -7.35794 -6.97931 -6.67118 -4.35717 2.63321 2.88361 3.05880 3.09789 3.22986 3.41411 3.66204 3.93876 4.40964 4.49381 4.66024 4.73172 4.92343 4.98173 5.12777 5.18712 5.41518 5.47352 5.62208 5.62974 5.70630 5.74520 5.83250 5.98192 6.10137 6.17537 6.30834 6.66497 6.73810 6.94183 7.07325 7.10725 7.27609 7.65898 7.72666 7.73685 7.95986 8.05005 8.20549 8.36515 8.60128 8.83198 8.90617 8.99280 10.20167 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026858 B = 0.003976 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.278939 B = 7040.138803 C = 7551.699589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.159 4.159 3 C 0.128 3.872 4 H 0.102 0.898 5 O -0.541 6.541 6 C -0.146 4.146 7 H 0.095 0.905 8 C -0.146 4.146 9 C 0.508 3.492 10 O -0.507 6.507 11 N -0.668 5.668 12 C 0.147 3.853 13 C -0.226 4.226 14 C -0.086 4.086 15 C -0.229 4.229 16 C 0.121 3.879 17 C -0.464 4.464 18 H 0.078 0.922 19 C 0.077 3.923 20 N -0.801 5.801 21 Si 0.908 3.092 22 H -0.264 1.264 23 H -0.279 1.279 24 H -0.266 1.266 25 C -0.183 4.183 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.075 0.925 30 H 0.064 0.936 31 H 0.365 0.635 32 H 0.063 0.937 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.399 0.601 36 H 0.100 0.900 37 H 0.091 0.909 38 H 0.093 0.907 39 H 0.279 0.721 40 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.531 -12.088 -0.431 14.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.196 4.196 3 C 0.068 3.932 4 H 0.120 0.880 5 O -0.345 6.345 6 C -0.168 4.168 7 H 0.113 0.887 8 C -0.203 4.203 9 C 0.293 3.707 10 O -0.380 6.380 11 N -0.312 5.312 12 C 0.056 3.944 13 C -0.247 4.247 14 C -0.105 4.105 15 C -0.249 4.249 16 C 0.118 3.882 17 C -0.494 4.494 18 H 0.096 0.904 19 C -0.140 4.140 20 N -0.427 5.427 21 Si 0.732 3.268 22 H -0.189 1.189 23 H -0.204 1.204 24 H -0.190 1.190 25 C -0.204 4.204 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.073 0.927 29 H 0.093 0.907 30 H 0.083 0.917 31 H 0.211 0.789 32 H 0.082 0.918 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.234 0.766 36 H 0.118 0.882 37 H 0.109 0.891 38 H 0.111 0.889 39 H 0.089 0.911 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -9.308 -11.267 -0.830 14.639 hybrid contribution 1.504 -0.754 0.821 1.872 sum -7.805 -12.022 -0.009 14.333 Atomic orbital electron populations 1.21690 0.95080 1.01169 1.02607 1.22350 0.97219 0.97291 1.02775 1.21719 0.90432 0.92167 0.88857 0.88003 1.86746 1.76007 1.56876 1.14837 1.22135 0.98741 0.94859 1.01022 0.88698 1.21807 1.02332 1.00466 0.95700 1.20363 0.82484 0.90757 0.77078 1.90747 1.54966 1.45690 1.46642 1.43530 1.07160 1.08065 1.72421 1.17606 0.95264 0.82741 0.98832 1.20283 1.01675 0.93819 1.08939 1.20418 0.95878 0.94787 0.99416 1.21036 0.97917 0.99255 1.06703 1.17353 0.91810 0.90642 0.88434 1.19504 0.97779 0.95854 1.36291 0.90437 1.25864 0.99298 0.94394 0.94412 1.69806 1.32810 1.06312 1.33739 0.86383 0.80147 0.78819 0.81430 1.18903 1.20435 1.19042 1.21062 0.95584 0.98481 1.05318 0.93017 0.92015 0.92694 0.90676 0.91715 0.78891 0.91789 0.91580 0.91245 0.76637 0.88229 0.89089 0.88900 0.91058 0.86064 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.28 9.81 37.16 0.36 -0.91 16 2 C -0.16 -1.35 5.40 -26.73 -0.14 -1.49 16 3 C 0.13 1.52 2.09 -26.73 -0.06 1.47 16 4 H 0.10 1.40 8.10 -51.93 -0.42 0.98 16 5 O -0.54 -7.51 11.77 -53.48 -0.63 -8.14 16 6 C -0.15 -1.75 2.50 -91.77 -0.23 -1.98 16 7 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 8 C -0.15 -1.44 8.75 37.16 0.33 -1.11 16 9 C 0.51 9.07 6.74 -10.99 -0.07 9.00 16 10 O -0.51 -11.23 13.03 -12.70 -0.17 -11.40 16 11 N -0.67 -12.69 5.18 -9.91 -0.05 -12.74 16 12 C 0.15 3.51 6.25 -83.77 -0.52 2.99 16 13 C -0.23 -5.52 8.66 -39.10 -0.34 -5.86 16 14 C -0.09 -2.07 10.02 -39.69 -0.40 -2.47 16 15 C -0.23 -5.82 9.79 -38.84 -0.38 -6.20 16 16 C 0.12 3.25 5.57 -106.85 -0.59 2.66 16 17 C -0.46 -12.36 9.05 -37.74 -0.34 -12.70 16 18 H 0.08 1.99 7.90 -52.48 -0.41 1.57 16 19 C 0.08 1.92 5.16 -17.35 -0.09 1.83 16 20 N -0.80 -20.16 10.94 55.55 0.61 -19.55 16 21 Si 0.91 18.57 29.59 -169.99 -5.03 13.54 16 22 H -0.26 -5.41 7.11 56.52 0.40 -5.01 16 23 H -0.28 -5.53 7.11 56.52 0.40 -5.13 16 24 H -0.27 -5.39 7.11 56.52 0.40 -4.99 16 25 C -0.18 -4.72 8.60 -38.69 -0.33 -5.05 16 26 H 0.05 0.37 8.14 -51.93 -0.42 -0.05 16 27 H 0.06 0.58 7.82 -51.93 -0.41 0.18 16 28 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 29 H 0.07 0.56 6.17 -51.93 -0.32 0.24 16 30 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.37 3.69 9.05 45.56 0.41 4.10 16 32 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 33 H 0.07 0.65 7.68 -51.93 -0.40 0.25 16 34 H 0.07 0.52 6.32 -51.93 -0.33 0.19 16 35 H 0.40 6.43 8.39 -40.82 -0.34 6.09 16 36 H 0.10 2.41 6.48 -52.49 -0.34 2.07 16 37 H 0.09 1.93 8.06 -52.48 -0.42 1.51 16 38 H 0.09 2.20 8.06 -52.49 -0.42 1.78 16 39 H 0.28 6.39 8.30 -40.82 -0.34 6.05 16 40 H 0.12 3.15 6.17 -52.48 -0.32 2.83 16 LS Contribution 329.40 15.07 4.96 4.96 Total: -1.00 -31.51 329.40 -8.09 -39.60 By element: Atomic # 1 Polarization: 18.54 SS G_CDS: -4.98 Total: 13.56 kcal Atomic # 6 Polarization: -17.03 SS G_CDS: -2.81 Total: -19.85 kcal Atomic # 7 Polarization: -32.84 SS G_CDS: 0.56 Total: -32.29 kcal Atomic # 8 Polarization: -18.74 SS G_CDS: -0.80 Total: -19.54 kcal Atomic # 14 Polarization: 18.57 SS G_CDS: -5.03 Total: 13.54 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.51 -8.09 -39.60 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909367645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -45.152 kcal (2) G-P(sol) polarization free energy of solvation -31.509 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.661 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.603 kcal (6) G-S(sol) free energy of system = (1) + (5) -84.755 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds