Wall clock time and date at job start Mon Mar 30 2020 02:57:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.46736 * 2 1 4 4 H 1.09007 * 109.47049 * 304.99825 * 3 2 1 5 5 O 1.42896 * 109.47420 * 65.00249 * 3 2 1 6 6 C 1.53001 * 109.47217 * 185.00353 * 3 2 1 7 7 H 1.09001 * 109.47034 * 299.99917 * 6 3 2 8 8 C 1.53006 * 109.47304 * 59.99676 * 6 3 2 9 9 C 1.50695 * 109.47357 * 179.97438 * 6 3 2 10 10 O 1.21281 * 119.99961 * 0.02562 * 9 6 3 11 11 N 1.34780 * 120.00176 * 180.27049 * 9 6 3 12 12 C 1.39932 * 120.00432 * 174.61499 * 11 9 6 13 13 C 1.39291 * 119.94584 * 325.55369 * 12 11 9 14 14 C 1.38484 * 120.42924 * 179.75906 * 13 12 11 15 15 C 1.37684 * 120.32223 * 0.52017 * 14 13 12 16 16 C 1.40743 * 119.88220 * 359.73554 * 15 14 13 17 17 C 1.41406 * 120.20686 * 180.02562 * 16 15 14 18 18 H 1.08006 * 120.00264 * 25.13050 * 17 16 15 19 19 C 1.39932 * 119.99813 * 205.13594 * 17 16 15 20 20 N 1.30828 * 120.00407 * 16.78457 * 19 17 16 21 21 Si 1.86802 * 119.99954 * 196.79044 * 19 17 16 22 22 H 1.48499 * 109.47447 * 59.99486 * 21 19 17 23 23 H 1.48506 * 109.47100 * 179.97438 * 21 19 17 24 24 H 1.48500 * 109.46848 * 299.99449 * 21 19 17 25 25 C 1.38241 * 119.95314 * 145.82878 * 12 11 9 26 26 H 1.09001 * 109.46740 * 180.02562 * 1 2 3 27 27 H 1.09004 * 109.47042 * 299.99874 * 1 2 3 28 28 H 1.08999 * 109.47520 * 60.00298 * 1 2 3 29 29 H 1.08999 * 109.46799 * 240.00549 * 2 1 3 30 30 H 1.08999 * 109.47520 * 119.99702 * 2 1 3 31 31 H 0.96701 * 114.00090 * 60.00101 * 5 3 2 32 32 H 1.09001 * 109.46878 * 60.00145 * 8 6 3 33 33 H 1.08997 * 109.47305 * 180.02562 * 8 6 3 34 34 H 1.08996 * 109.46754 * 300.00570 * 8 6 3 35 35 H 0.97010 * 119.99721 * 354.62214 * 11 9 6 36 36 H 1.08001 * 119.78458 * 0.02562 * 13 12 11 37 37 H 1.08005 * 119.84120 * 180.23373 * 14 13 12 38 38 H 1.08000 * 120.05680 * 179.76932 * 15 14 13 39 39 H 0.96997 * 120.00726 * 180.02562 * 20 19 17 40 40 H 1.08008 * 120.15573 * 359.95746 * 25 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 1 1.6052 1.9816 -0.8419 5 8 1.6619 2.0814 1.2210 6 6 3.5647 1.4445 -0.1258 7 1 3.9994 0.9055 0.7160 8 6 3.9695 0.7604 -1.4332 9 6 4.0669 2.8653 -0.1264 10 8 3.2825 3.7858 -0.0348 11 7 5.3873 3.1133 -0.2338 12 6 5.8448 4.4308 -0.3479 13 6 5.0868 5.3727 -1.0396 14 6 5.5276 6.6804 -1.1544 15 6 6.7263 7.0616 -0.5946 16 6 7.5056 6.1196 0.1027 17 6 8.7376 6.5037 0.6808 18 1 8.9075 7.5345 0.9548 19 6 9.7367 5.5483 0.8977 20 7 9.6811 4.3931 0.2861 21 14 11.1499 5.9222 2.0607 22 1 10.6145 6.1961 3.4184 23 1 12.0669 4.7554 2.1167 24 1 11.8916 7.1122 1.5717 25 6 7.0511 4.7943 0.2211 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 1.8933 -0.5138 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 2.0142 1.6543 2.0139 32 1 3.5348 1.2994 -2.2750 33 1 5.0558 0.7614 -1.5226 34 1 3.6062 -0.2672 -1.4331 35 1 6.0206 2.3784 -0.2322 36 1 4.1470 5.0822 -1.4856 37 1 4.9304 7.4039 -1.6897 38 1 7.0678 8.0818 -0.6899 39 1 10.3734 3.7306 0.4368 40 1 7.6415 4.0638 0.7544 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000909367645.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:13 Heat of formation + Delta-G solvation = -105.037279 kcal Electronic energy + Delta-G solvation = -21395.593705 eV Core-core repulsion = 18173.420605 eV Total energy + Delta-G solvation = -3222.173100 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.45536 -39.45768 -38.30178 -35.94693 -35.20654 -34.50499 -32.86908 -31.46045 -30.04685 -27.19379 -26.87691 -25.29509 -23.15479 -22.79596 -21.86205 -20.90937 -19.23256 -18.43519 -17.64149 -17.30094 -16.83669 -16.51103 -16.34529 -15.96047 -15.53136 -15.06813 -14.94319 -14.49197 -14.35642 -14.12031 -13.50518 -13.45788 -13.34613 -13.03372 -12.89224 -12.81368 -12.74645 -12.62484 -12.38663 -12.29249 -11.85685 -11.71067 -11.58596 -11.54659 -11.13412 -10.94158 -10.83511 -10.41694 -9.33978 -8.84551 -8.54012 -6.35951 0.83829 1.04242 1.40287 1.49974 1.53836 1.84484 2.22579 2.26875 2.75775 3.49592 3.56668 3.70501 3.72526 4.09039 4.21278 4.27475 4.32047 4.45293 4.61483 4.70854 4.75939 4.83069 4.85504 4.87251 5.03861 5.10322 5.12351 5.16617 5.22413 5.25382 5.36486 5.38447 5.44355 5.80223 5.86610 6.02651 6.08045 6.34267 6.59208 6.77394 6.92865 6.93487 6.98249 7.36948 8.34378 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.026858 B = 0.003976 C = 0.003707 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1042.278939 B = 7040.138803 C = 7551.699589 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.147 4.147 3 C 0.127 3.873 4 H 0.075 0.925 5 O -0.570 6.570 6 C -0.131 4.131 7 H 0.126 0.874 8 C -0.143 4.143 9 C 0.503 3.497 10 O -0.553 6.553 11 N -0.663 5.663 12 C 0.153 3.847 13 C -0.242 4.242 14 C -0.085 4.085 15 C -0.252 4.252 16 C 0.093 3.907 17 C -0.500 4.500 18 H 0.075 0.925 19 C 0.039 3.961 20 N -0.820 5.820 21 Si 0.982 3.018 22 H -0.264 1.264 23 H -0.264 1.264 24 H -0.262 1.262 25 C -0.204 4.204 26 H 0.070 0.930 27 H 0.048 0.952 28 H 0.045 0.955 29 H 0.093 0.907 30 H 0.084 0.916 31 H 0.380 0.620 32 H 0.051 0.949 33 H 0.068 0.932 34 H 0.105 0.895 35 H 0.414 0.586 36 H 0.099 0.901 37 H 0.117 0.883 38 H 0.100 0.900 39 H 0.289 0.711 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.988 -14.385 0.050 16.454 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.185 4.185 3 C 0.068 3.932 4 H 0.093 0.907 5 O -0.376 6.376 6 C -0.153 4.153 7 H 0.144 0.856 8 C -0.201 4.201 9 C 0.292 3.708 10 O -0.430 6.430 11 N -0.309 5.309 12 C 0.060 3.940 13 C -0.263 4.263 14 C -0.104 4.104 15 C -0.271 4.271 16 C 0.090 3.910 17 C -0.529 4.529 18 H 0.093 0.907 19 C -0.176 4.176 20 N -0.446 5.446 21 Si 0.803 3.197 22 H -0.188 1.188 23 H -0.188 1.188 24 H -0.186 1.186 25 C -0.225 4.225 26 H 0.089 0.911 27 H 0.067 0.933 28 H 0.065 0.935 29 H 0.112 0.888 30 H 0.103 0.897 31 H 0.228 0.772 32 H 0.070 0.930 33 H 0.087 0.913 34 H 0.123 0.877 35 H 0.251 0.749 36 H 0.117 0.883 37 H 0.135 0.865 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -8.771 -13.610 -0.361 16.195 hybrid contribution 1.270 -0.052 0.638 1.422 sum -7.500 -13.662 0.276 15.588 Atomic orbital electron populations 1.21701 0.95371 1.02032 1.01594 1.22273 0.96872 0.94720 1.04599 1.21752 0.90067 0.93972 0.87450 0.90704 1.86704 1.76560 1.58237 1.16120 1.22168 0.98785 0.90770 1.03536 0.85637 1.21856 1.02565 1.01949 0.93698 1.21500 0.81301 0.92978 0.75012 1.90723 1.55865 1.47903 1.48479 1.43557 1.08285 1.06691 1.72335 1.17689 0.94363 0.84791 0.97190 1.20441 1.01847 0.94387 1.09641 1.20721 0.95590 0.95334 0.98758 1.21206 0.98676 0.99629 1.07639 1.17768 0.92596 0.91656 0.88985 1.19768 0.98695 0.96497 1.37982 0.90674 1.26694 1.01613 0.93932 0.95396 1.69836 1.33882 1.06966 1.33931 0.85259 0.76692 0.79113 0.78657 1.18837 1.18814 1.18597 1.21021 0.96571 0.98212 1.06743 0.91144 0.93327 0.93532 0.88818 0.89729 0.77204 0.93006 0.91308 0.87692 0.74926 0.88316 0.86506 0.88140 0.89993 0.86747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.28 9.81 71.98 0.71 -1.58 16 2 C -0.15 -2.04 5.40 30.59 0.17 -1.88 16 3 C 0.13 2.84 2.09 30.59 0.06 2.91 16 4 H 0.07 2.06 8.10 -2.38 -0.02 2.04 16 5 O -0.57 -15.48 11.77 -131.53 -1.55 -17.03 16 6 C -0.13 -2.87 2.50 -11.54 -0.03 -2.90 16 7 H 0.13 2.05 8.14 -2.39 -0.02 2.03 16 8 C -0.14 -2.43 8.75 71.98 0.63 -1.80 16 9 C 0.50 17.79 6.74 87.65 0.59 18.38 16 10 O -0.55 -24.94 13.03 14.42 0.19 -24.75 16 11 N -0.66 -25.06 5.18 -303.66 -1.57 -26.63 16 12 C 0.15 7.41 6.25 38.10 0.24 7.65 16 13 C -0.24 -12.04 8.66 22.58 0.20 -11.85 16 14 C -0.09 -4.17 10.02 22.20 0.22 -3.95 16 15 C -0.25 -13.12 9.79 22.75 0.22 -12.89 16 16 C 0.09 5.16 5.57 -21.31 -0.12 5.04 16 17 C -0.50 -27.20 9.05 23.46 0.21 -26.99 16 18 H 0.08 3.96 7.90 -2.91 -0.02 3.94 16 19 C 0.04 1.93 5.16 85.25 0.44 2.37 16 20 N -0.82 -41.23 10.94 21.82 0.24 -40.99 16 21 Si 0.98 37.58 29.59 68.60 2.03 39.61 16 22 H -0.26 -10.02 7.11 99.48 0.71 -9.31 16 23 H -0.26 -9.37 7.11 99.48 0.71 -8.67 16 24 H -0.26 -9.78 7.11 99.48 0.71 -9.08 16 25 C -0.20 -10.77 8.60 22.85 0.20 -10.57 16 26 H 0.07 0.82 8.14 -2.39 -0.02 0.80 16 27 H 0.05 0.86 7.82 -2.39 -0.02 0.84 16 28 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.09 0.98 6.17 -2.39 -0.01 0.97 16 30 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.38 7.18 9.05 -74.06 -0.67 6.51 16 32 H 0.05 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.07 1.15 7.68 -2.39 -0.02 1.13 16 34 H 0.10 1.07 6.32 -2.39 -0.02 1.06 16 35 H 0.41 12.96 8.39 -92.70 -0.78 12.18 16 36 H 0.10 4.88 6.48 -2.91 -0.02 4.86 16 37 H 0.12 4.94 8.06 -2.91 -0.02 4.92 16 38 H 0.10 4.91 8.06 -2.91 -0.02 4.88 16 39 H 0.29 13.01 8.30 -92.71 -0.77 12.24 16 40 H 0.11 6.08 6.17 -2.91 -0.02 6.07 16 Total: -1.00 -70.49 329.40 2.68 -67.80 By element: Atomic # 1 Polarization: 40.43 SS G_CDS: -0.39 Total: 40.04 kcal Atomic # 6 Polarization: -41.78 SS G_CDS: 3.73 Total: -38.05 kcal Atomic # 7 Polarization: -66.29 SS G_CDS: -1.34 Total: -67.62 kcal Atomic # 8 Polarization: -40.42 SS G_CDS: -1.36 Total: -41.78 kcal Atomic # 14 Polarization: 37.58 SS G_CDS: 2.03 Total: 39.61 kcal Total: -70.49 2.68 -67.80 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000909367645.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.233 kcal (2) G-P(sol) polarization free energy of solvation -70.487 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.683 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.804 kcal (6) G-S(sol) free energy of system = (1) + (5) -105.037 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds