Wall clock time and date at job start Mon Mar 30 2020 01:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47434 * 2 1 4 4 C 1.52997 * 109.47434 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47122 * 55.00009 * 4 3 2 6 6 C 1.53008 * 109.47124 * 175.00008 * 4 3 2 7 7 N 1.46496 * 109.47165 * 295.00274 * 4 3 2 8 8 C 1.34780 * 119.99875 * 155.00069 * 7 4 3 9 9 O 1.21590 * 120.00046 * 359.97438 * 8 7 4 10 10 C 1.47539 * 119.99531 * 180.02562 * 8 7 4 11 11 C 1.39666 * 120.19911 * 359.97105 * 10 8 7 12 12 C 1.37826 * 119.91846 * 180.02562 * 11 10 8 13 13 C 1.38580 * 120.32412 * 0.02562 * 12 11 10 14 14 C 1.38025 * 120.40075 * 0.02562 * 13 12 11 15 15 C 1.38831 * 120.07205 * 359.97438 * 14 13 12 16 16 O 1.35518 * 120.16245 * 179.97438 * 15 14 13 17 17 C 1.34820 * 116.99988 * 354.40002 * 16 15 14 18 18 H 1.07997 * 119.99738 * 5.06751 * 17 16 15 19 19 C 1.38700 * 120.00183 * 185.05758 * 17 16 15 20 20 N 1.31525 * 119.99824 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00060 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46857 * 90.00214 * 21 19 17 23 23 H 1.48502 * 109.47416 * 210.00303 * 21 19 17 24 24 H 1.48507 * 109.47264 * 330.00704 * 21 19 17 25 25 H 1.09004 * 109.47287 * 59.99980 * 1 2 3 26 26 H 1.09001 * 109.47349 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46809 * 299.99949 * 1 2 3 28 28 H 1.09006 * 109.46977 * 240.00263 * 2 1 3 29 29 H 1.09000 * 109.47467 * 120.00755 * 2 1 3 30 30 H 1.08998 * 109.47194 * 59.99673 * 3 2 1 31 31 H 1.09004 * 109.47423 * 300.00292 * 3 2 1 32 32 H 1.09004 * 109.46627 * 180.02562 * 6 4 3 33 33 H 1.08996 * 109.46838 * 299.99857 * 6 4 3 34 34 H 1.08999 * 109.46994 * 60.00540 * 6 4 3 35 35 H 0.97004 * 120.00297 * 334.99496 * 7 4 3 36 36 H 1.07997 * 120.03654 * 0.04911 * 11 10 8 37 37 H 1.08001 * 119.84001 * 180.02562 * 12 11 10 38 38 H 1.07999 * 119.79696 * 180.27254 * 13 12 11 39 39 H 1.07998 * 119.96126 * 180.02562 * 14 13 12 40 40 H 0.97002 * 119.99712 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0800 2.8795 -0.1264 7 7 4.0589 0.8585 1.2508 8 6 5.2809 0.2919 1.2979 9 8 5.9774 0.2651 0.3016 10 6 5.7729 -0.2967 2.5582 11 6 4.9761 -0.2685 3.7049 12 6 5.4417 -0.8196 4.8792 13 6 6.6982 -1.4020 4.9289 14 6 7.4972 -1.4362 3.8039 15 6 7.0447 -0.8860 2.6123 16 8 7.8278 -0.9182 1.5068 17 6 9.0803 -1.3938 1.6575 18 1 9.3917 -1.8033 2.6071 19 6 9.9688 -1.3575 0.5931 20 7 9.5895 -0.8586 -0.5633 21 14 11.7043 -2.0159 0.8022 22 1 11.7315 -3.4590 0.4532 23 1 12.6270 -1.2726 -0.0930 24 1 12.1340 -1.8395 2.2128 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 5.1700 2.8794 -0.1273 33 1 3.7163 3.3139 -1.0575 34 1 3.7171 3.4688 0.7157 35 1 3.5031 0.8796 2.0456 36 1 3.9962 0.1842 3.6713 37 1 4.8243 -0.7975 5.7651 38 1 7.0528 -1.8352 5.8525 39 1 8.4751 -1.8922 3.8505 40 1 10.2110 -0.8328 -1.3076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919806253.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:19 Heat of formation + Delta-G solvation = -53.165390 kcal Electronic energy + Delta-G solvation = -21545.997274 eV Core-core repulsion = 18326.073508 eV Total energy + Delta-G solvation = -3219.923766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.63626 -38.34398 -36.38284 -36.07652 -33.19091 -32.31570 -31.25195 -29.49007 -28.88039 -26.65055 -25.36689 -23.35769 -21.88444 -21.43106 -20.54892 -19.82669 -18.00466 -17.51026 -16.19466 -15.86838 -14.78772 -14.66415 -14.41629 -14.28890 -14.11149 -13.83910 -13.71685 -13.48688 -12.84845 -12.79276 -12.58368 -12.46432 -12.10323 -11.91920 -11.69706 -11.41219 -11.29323 -11.10885 -10.90834 -10.84421 -10.77376 -10.69437 -10.49688 -10.43408 -9.53733 -8.86080 -8.77537 -8.47264 -8.24021 -7.28417 -6.42361 -4.02326 1.75050 2.34171 3.12895 3.14022 3.18704 3.77799 3.80640 3.95230 4.67049 4.72700 4.97659 5.01135 5.09325 5.20115 5.39515 5.44147 5.51774 5.53924 5.57818 5.66331 5.75502 5.78043 5.87248 5.91797 6.01558 6.06510 6.12207 6.14985 6.29757 6.38788 6.50824 6.58961 6.72426 6.93930 7.08124 7.10873 7.26527 7.31620 7.71912 7.94602 8.21632 8.97353 9.18141 9.70228 10.71478 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.005053 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.372997 B = 5540.102075 C = 6600.925657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.124 4.124 4 C 0.144 3.856 5 H 0.086 0.914 6 C -0.163 4.163 7 N -0.738 5.738 8 C 0.554 3.446 9 O -0.502 6.502 10 C -0.226 4.226 11 C -0.039 4.039 12 C -0.231 4.231 13 C -0.052 4.052 14 C -0.239 4.239 15 C 0.189 3.811 16 O -0.124 6.124 17 C -0.404 4.404 18 H 0.093 0.907 19 C 0.045 3.955 20 N -0.833 5.833 21 Si 0.940 3.060 22 H -0.272 1.272 23 H -0.276 1.276 24 H -0.266 1.266 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.052 0.948 28 H 0.063 0.937 29 H 0.065 0.935 30 H 0.064 0.936 31 H 0.073 0.927 32 H 0.064 0.936 33 H 0.058 0.942 34 H 0.051 0.949 35 H 0.390 0.610 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.176 3.054 4.980 14.413 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.162 4.162 4 C 0.039 3.961 5 H 0.104 0.896 6 C -0.221 4.221 7 N -0.393 5.393 8 C 0.344 3.656 9 O -0.376 6.376 10 C -0.231 4.231 11 C -0.058 4.058 12 C -0.250 4.250 13 C -0.070 4.070 14 C -0.258 4.258 15 C 0.129 3.871 16 O -0.022 6.022 17 C -0.480 4.480 18 H 0.111 0.889 19 C -0.163 4.163 20 N -0.464 5.464 21 Si 0.765 3.235 22 H -0.198 1.198 23 H -0.201 1.201 24 H -0.191 1.191 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.071 0.929 28 H 0.082 0.918 29 H 0.084 0.916 30 H 0.083 0.917 31 H 0.092 0.908 32 H 0.083 0.917 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.224 0.776 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -12.552 3.145 3.686 13.455 hybrid contribution 0.578 -0.333 0.681 0.953 sum -11.975 2.812 4.368 13.053 Atomic orbital electron populations 1.21774 0.96120 1.01458 1.01460 1.21541 0.95304 0.96773 1.02822 1.21902 0.94521 0.97268 1.02494 1.20826 0.92585 0.94249 0.88424 0.89610 1.22181 1.02700 0.96177 1.01056 1.45980 1.18450 1.62243 1.12649 1.18227 0.80798 0.77968 0.88656 1.90939 1.54993 1.56197 1.35453 1.18900 0.96228 1.13386 0.94612 1.20755 0.97058 0.96061 0.91877 1.20457 0.97943 1.08901 0.97743 1.20890 0.93545 0.95635 0.96947 1.21155 1.02505 1.08890 0.93221 1.19291 0.90052 0.90775 0.86964 1.84178 1.22733 1.68222 1.27055 1.21495 0.85777 1.40870 0.99860 0.88917 1.25377 0.99771 0.96630 0.94521 1.70135 1.35745 1.39105 1.01429 0.85735 0.80171 0.78860 0.78780 1.19765 1.20142 1.19076 0.92961 0.92903 0.92927 0.91843 0.91600 0.91733 0.90850 0.91690 0.92293 0.92950 0.77592 0.87106 0.87341 0.87240 0.85126 0.91903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.91 37.16 0.37 -0.96 16 2 C -0.13 -1.37 5.82 -26.74 -0.16 -1.53 16 3 C -0.12 -1.31 4.75 -26.74 -0.13 -1.44 16 4 C 0.14 2.09 2.57 -67.93 -0.17 1.91 16 5 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 6 C -0.16 -2.27 9.48 37.16 0.35 -1.92 16 7 N -0.74 -11.92 4.48 -54.85 -0.25 -12.16 16 8 C 0.55 12.23 7.73 -12.47 -0.10 12.13 16 9 O -0.50 -13.78 14.83 -16.57 -0.25 -14.02 16 10 C -0.23 -4.96 5.89 -104.81 -0.62 -5.58 16 11 C -0.04 -0.67 9.54 -39.20 -0.37 -1.04 16 12 C -0.23 -3.83 10.03 -39.61 -0.40 -4.22 16 13 C -0.05 -0.92 10.03 -39.53 -0.40 -1.32 16 14 C -0.24 -5.18 9.16 -39.44 -0.36 -5.54 16 15 C 0.19 4.74 6.66 -38.60 -0.26 4.48 16 16 O -0.12 -3.68 7.84 -21.07 -0.17 -3.85 16 17 C -0.40 -11.54 9.49 30.90 0.29 -11.25 16 18 H 0.09 2.40 5.21 -52.49 -0.27 2.13 16 19 C 0.04 1.26 5.49 -17.51 -0.10 1.16 16 20 N -0.83 -25.29 13.67 55.48 0.76 -24.53 16 21 Si 0.94 20.67 29.55 -169.99 -5.02 15.65 16 22 H -0.27 -5.82 7.11 56.52 0.40 -5.41 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 24 H -0.27 -5.59 7.11 56.52 0.40 -5.18 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.07 0.77 7.75 -51.93 -0.40 0.37 16 30 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 33 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 35 H 0.39 5.11 6.63 -40.82 -0.27 4.84 16 36 H 0.11 1.48 6.40 -52.49 -0.34 1.14 16 37 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 39 H 0.13 2.80 5.64 -52.49 -0.30 2.50 16 40 H 0.27 7.50 8.31 -40.82 -0.34 7.17 16 LS Contribution 335.15 15.07 5.05 5.05 Total: -1.00 -34.01 335.15 -7.67 -41.68 By element: Atomic # 1 Polarization: 13.05 SS G_CDS: -5.76 Total: 7.29 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: -2.04 Total: -15.10 kcal Atomic # 7 Polarization: -37.20 SS G_CDS: 0.51 Total: -36.69 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.41 Total: -17.87 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -34.01 -7.67 -41.68 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919806253.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.489 kcal (2) G-P(sol) polarization free energy of solvation -34.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.676 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.165 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds