Wall clock time and date at job start Mon Mar 30 2020 01:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52994 * 109.47434 * 2 1 4 4 C 1.52997 * 109.47434 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.47122 * 55.00009 * 4 3 2 6 6 C 1.53008 * 109.47124 * 175.00008 * 4 3 2 7 7 N 1.46496 * 109.47165 * 295.00274 * 4 3 2 8 8 C 1.34780 * 119.99875 * 155.00069 * 7 4 3 9 9 O 1.21590 * 120.00046 * 359.97438 * 8 7 4 10 10 C 1.47539 * 119.99531 * 180.02562 * 8 7 4 11 11 C 1.39666 * 120.19911 * 359.97105 * 10 8 7 12 12 C 1.37826 * 119.91846 * 180.02562 * 11 10 8 13 13 C 1.38580 * 120.32412 * 0.02562 * 12 11 10 14 14 C 1.38025 * 120.40075 * 0.02562 * 13 12 11 15 15 C 1.38831 * 120.07205 * 359.97438 * 14 13 12 16 16 O 1.35518 * 120.16245 * 179.97438 * 15 14 13 17 17 C 1.34820 * 116.99988 * 354.40002 * 16 15 14 18 18 H 1.07997 * 119.99738 * 5.06751 * 17 16 15 19 19 C 1.38700 * 120.00183 * 185.05758 * 17 16 15 20 20 N 1.31525 * 119.99824 * 0.02562 * 19 17 16 21 21 Si 1.86793 * 120.00060 * 179.97438 * 19 17 16 22 22 H 1.48499 * 109.46857 * 90.00214 * 21 19 17 23 23 H 1.48502 * 109.47416 * 210.00303 * 21 19 17 24 24 H 1.48507 * 109.47264 * 330.00704 * 21 19 17 25 25 H 1.09004 * 109.47287 * 59.99980 * 1 2 3 26 26 H 1.09001 * 109.47349 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.46809 * 299.99949 * 1 2 3 28 28 H 1.09006 * 109.46977 * 240.00263 * 2 1 3 29 29 H 1.09000 * 109.47467 * 120.00755 * 2 1 3 30 30 H 1.08998 * 109.47194 * 59.99673 * 3 2 1 31 31 H 1.09004 * 109.47423 * 300.00292 * 3 2 1 32 32 H 1.09004 * 109.46627 * 180.02562 * 6 4 3 33 33 H 1.08996 * 109.46838 * 299.99857 * 6 4 3 34 34 H 1.08999 * 109.46994 * 60.00540 * 6 4 3 35 35 H 0.97004 * 120.00297 * 334.99496 * 7 4 3 36 36 H 1.07997 * 120.03654 * 0.04911 * 11 10 8 37 37 H 1.08001 * 119.84001 * 180.02562 * 12 11 10 38 38 H 1.07999 * 119.79696 * 180.27254 * 13 12 11 39 39 H 1.07998 * 119.96126 * 180.02562 * 14 13 12 40 40 H 0.97002 * 119.99712 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 3.5700 1.4424 -0.0006 5 1 3.9330 0.8531 -0.8427 6 6 4.0800 2.8795 -0.1264 7 7 4.0589 0.8585 1.2508 8 6 5.2809 0.2919 1.2979 9 8 5.9774 0.2651 0.3016 10 6 5.7729 -0.2967 2.5582 11 6 4.9761 -0.2685 3.7049 12 6 5.4417 -0.8196 4.8792 13 6 6.6982 -1.4020 4.9289 14 6 7.4972 -1.4362 3.8039 15 6 7.0447 -0.8860 2.6123 16 8 7.8278 -0.9182 1.5068 17 6 9.0803 -1.3938 1.6575 18 1 9.3917 -1.8033 2.6071 19 6 9.9688 -1.3575 0.5931 20 7 9.5895 -0.8586 -0.5633 21 14 11.7043 -2.0159 0.8022 22 1 11.7315 -3.4590 0.4532 23 1 12.6270 -1.2726 -0.0930 24 1 12.1340 -1.8395 2.2128 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8901 29 1 1.8934 -0.5139 0.8899 30 1 1.6767 1.9563 0.8899 31 1 1.6767 1.9563 -0.8900 32 1 5.1700 2.8794 -0.1273 33 1 3.7163 3.3139 -1.0575 34 1 3.7171 3.4688 0.7157 35 1 3.5031 0.8796 2.0456 36 1 3.9962 0.1842 3.6713 37 1 4.8243 -0.7975 5.7651 38 1 7.0528 -1.8352 5.8525 39 1 8.4751 -1.8922 3.8505 40 1 10.2110 -0.8328 -1.3076 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919806253.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:19 Heat of formation + Delta-G solvation = -75.765769 kcal Electronic energy + Delta-G solvation = -21546.977300 eV Core-core repulsion = 18326.073508 eV Total energy + Delta-G solvation = -3220.903792 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.31316 -39.99325 -38.04949 -37.48244 -34.44473 -34.27958 -32.68124 -30.90809 -30.54725 -27.58060 -27.36469 -24.90791 -23.34616 -22.60504 -21.77785 -21.41183 -19.83479 -19.20410 -17.88112 -17.27030 -16.36717 -16.15206 -16.03412 -15.79421 -15.53765 -15.34922 -15.16219 -14.87153 -14.41807 -14.25000 -14.07133 -13.59064 -13.55052 -13.16710 -12.98804 -12.88658 -12.69220 -12.52866 -12.36432 -12.33725 -12.12846 -11.84038 -11.61707 -11.50926 -11.40182 -10.83495 -10.55414 -10.04146 -9.75916 -9.02906 -8.44624 -6.15771 0.14175 0.73359 1.31596 1.43342 1.50919 2.14001 2.15775 2.34827 2.88360 3.23680 3.47947 3.72202 4.00603 4.07276 4.08904 4.12156 4.29486 4.38971 4.49731 4.53292 4.62340 4.66475 4.77228 4.83008 4.90540 4.97911 5.02914 5.06746 5.09973 5.16705 5.27874 5.31624 5.34811 5.49263 5.50321 5.62178 5.70085 5.71608 5.96350 6.17943 6.77297 6.94640 7.55895 7.81133 8.76004 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017668 B = 0.005053 C = 0.004241 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1584.372997 B = 5540.102075 C = 6600.925657 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C -0.110 4.110 4 C 0.138 3.862 5 H 0.046 0.954 6 C -0.157 4.157 7 N -0.710 5.710 8 C 0.547 3.453 9 O -0.570 6.570 10 C -0.245 4.245 11 C -0.030 4.030 12 C -0.200 4.200 13 C -0.041 4.041 14 C -0.258 4.258 15 C 0.147 3.853 16 O -0.189 6.189 17 C -0.429 4.429 18 H 0.106 0.894 19 C -0.022 4.022 20 N -0.906 5.906 21 Si 1.022 2.978 22 H -0.262 1.262 23 H -0.272 1.272 24 H -0.248 1.248 25 H 0.059 0.941 26 H 0.052 0.948 27 H 0.067 0.933 28 H 0.041 0.959 29 H 0.056 0.944 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.017 0.983 33 H 0.082 0.918 34 H 0.078 0.922 35 H 0.409 0.591 36 H 0.160 0.840 37 H 0.165 0.835 38 H 0.154 0.846 39 H 0.122 0.878 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.236 3.462 9.014 18.890 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C -0.147 4.147 4 C 0.034 3.966 5 H 0.065 0.935 6 C -0.215 4.215 7 N -0.366 5.366 8 C 0.337 3.663 9 O -0.449 6.449 10 C -0.250 4.250 11 C -0.048 4.048 12 C -0.219 4.219 13 C -0.059 4.059 14 C -0.278 4.278 15 C 0.092 3.908 16 O -0.092 6.092 17 C -0.505 4.505 18 H 0.124 0.876 19 C -0.221 4.221 20 N -0.542 5.542 21 Si 0.841 3.159 22 H -0.186 1.186 23 H -0.197 1.197 24 H -0.171 1.171 25 H 0.078 0.922 26 H 0.071 0.929 27 H 0.086 0.914 28 H 0.060 0.940 29 H 0.075 0.925 30 H 0.111 0.889 31 H 0.110 0.890 32 H 0.037 0.963 33 H 0.101 0.899 34 H 0.097 0.903 35 H 0.247 0.753 36 H 0.178 0.822 37 H 0.182 0.818 38 H 0.171 0.829 39 H 0.140 0.860 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.714 3.565 7.816 17.909 hybrid contribution 1.131 -0.400 -0.253 1.227 sum -14.583 3.164 7.563 16.729 Atomic orbital electron populations 1.21725 0.93970 1.01918 1.02619 1.21548 0.97133 0.96614 1.01403 1.21843 0.90506 0.97619 1.04768 1.21010 0.95620 0.93722 0.86260 0.93539 1.22129 0.99674 0.96219 1.03510 1.45741 1.16491 1.60172 1.14149 1.18538 0.81872 0.77828 0.88066 1.90922 1.57316 1.58973 1.37738 1.19368 0.96008 1.13310 0.96316 1.21303 0.98215 0.95047 0.90246 1.21181 0.97218 1.04586 0.98891 1.21432 0.93446 0.94176 0.96869 1.21297 1.03225 1.09573 0.93679 1.20118 0.91126 0.91994 0.87576 1.84184 1.23691 1.71729 1.29567 1.22045 0.86417 1.41282 1.00717 0.87641 1.26765 1.04772 0.96801 0.93805 1.70334 1.37743 1.43208 1.02878 0.84561 0.73546 0.78284 0.79548 1.18631 1.19716 1.17100 0.92162 0.92899 0.91365 0.93997 0.92522 0.88906 0.88975 0.96326 0.89945 0.90347 0.75253 0.82220 0.81791 0.82886 0.86013 0.92075 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.11 9.91 71.98 0.71 -1.39 16 2 C -0.13 -2.57 5.82 30.59 0.18 -2.39 16 3 C -0.11 -2.02 4.75 30.59 0.15 -1.88 16 4 C 0.14 4.01 2.57 44.99 0.12 4.13 16 5 H 0.05 1.73 7.58 -2.39 -0.02 1.72 16 6 C -0.16 -4.35 9.48 71.98 0.68 -3.67 16 7 N -0.71 -22.58 4.48 -445.69 -2.00 -24.58 16 8 C 0.55 25.27 7.73 86.70 0.67 25.94 16 9 O -0.57 -34.35 14.83 16.90 0.25 -34.10 16 10 C -0.25 -10.83 5.89 -19.98 -0.12 -10.95 16 11 C -0.03 -0.90 9.54 22.52 0.21 -0.69 16 12 C -0.20 -5.39 10.03 22.25 0.22 -5.16 16 13 C -0.04 -1.30 10.03 22.30 0.22 -1.07 16 14 C -0.26 -11.24 9.16 22.36 0.20 -11.04 16 15 C 0.15 7.72 6.66 22.91 0.15 7.87 16 16 O -0.19 -12.27 7.84 0.80 0.01 -12.26 16 17 C -0.43 -26.40 9.49 67.93 0.64 -25.75 16 18 H 0.11 5.83 5.21 -2.91 -0.02 5.81 16 19 C -0.02 -1.35 5.49 84.85 0.47 -0.88 16 20 N -0.91 -60.15 13.67 21.62 0.30 -59.86 16 21 Si 1.02 44.88 29.55 68.60 2.03 46.91 16 22 H -0.26 -10.85 7.11 99.48 0.71 -10.14 16 23 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 24 H -0.25 -9.90 7.11 99.48 0.71 -9.20 16 25 H 0.06 0.79 8.14 -2.39 -0.02 0.77 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.04 1.00 8.14 -2.38 -0.02 0.98 16 29 H 0.06 1.21 7.75 -2.39 -0.02 1.19 16 30 H 0.09 1.26 8.14 -2.39 -0.02 1.24 16 31 H 0.09 1.44 8.14 -2.38 -0.02 1.42 16 32 H 0.02 0.66 8.14 -2.38 -0.02 0.64 16 33 H 0.08 1.88 8.14 -2.39 -0.02 1.86 16 34 H 0.08 1.74 8.14 -2.39 -0.02 1.72 16 35 H 0.41 9.41 6.63 -92.71 -0.61 8.79 16 36 H 0.16 3.23 6.40 -2.91 -0.02 3.22 16 37 H 0.16 2.83 8.06 -2.91 -0.02 2.81 16 38 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 39 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 40 H 0.27 16.42 8.31 -92.71 -0.77 15.65 16 Total: -1.00 -88.30 335.15 5.53 -82.77 By element: Atomic # 1 Polarization: 27.63 SS G_CDS: 0.43 Total: 28.05 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: 4.52 Total: -26.94 kcal Atomic # 7 Polarization: -82.74 SS G_CDS: -1.70 Total: -84.44 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: 0.26 Total: -46.36 kcal Atomic # 14 Polarization: 44.88 SS G_CDS: 2.03 Total: 46.91 kcal Total: -88.30 5.53 -82.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919806253.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.008 kcal (2) G-P(sol) polarization free energy of solvation -88.301 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.774 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.766 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds