Wall clock time and date at job start Mon Mar 30 2020 01:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46960 * 2 1 4 4 C 1.53000 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47285 * 304.99594 * 4 3 2 6 6 C 1.53003 * 109.46995 * 184.99577 * 4 3 2 7 7 N 1.46501 * 109.47144 * 65.00331 * 4 3 2 8 8 C 1.34780 * 119.99533 * 205.00001 * 7 4 3 9 9 O 1.21590 * 120.00046 * 359.97438 * 8 7 4 10 10 C 1.47535 * 119.99867 * 179.97438 * 8 7 4 11 11 C 1.39665 * 120.19576 * 359.97438 * 10 8 7 12 12 C 1.37830 * 119.92214 * 180.02562 * 11 10 8 13 13 C 1.38580 * 120.32046 * 359.97438 * 12 11 10 14 14 C 1.38026 * 120.40073 * 359.97438 * 13 12 11 15 15 C 1.38831 * 120.07205 * 0.02562 * 14 13 12 16 16 O 1.35519 * 120.16243 * 180.02562 * 15 14 13 17 17 C 1.34817 * 117.00144 * 354.39671 * 16 15 14 18 18 H 1.08011 * 119.99389 * 5.06697 * 17 16 15 19 19 C 1.38693 * 120.00626 * 185.06457 * 17 16 15 20 20 N 1.31517 * 119.99838 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00259 * 179.97438 * 19 17 16 22 22 H 1.48511 * 109.46998 * 60.00314 * 21 19 17 23 23 H 1.48501 * 109.47046 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47494 * 300.00160 * 21 19 17 25 25 H 1.09003 * 109.47405 * 60.00434 * 1 2 3 26 26 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47034 * 300.00282 * 1 2 3 28 28 H 1.08994 * 109.47273 * 240.00212 * 2 1 3 29 29 H 1.08994 * 109.47240 * 119.99773 * 2 1 3 30 30 H 1.08995 * 109.47478 * 59.99989 * 3 2 1 31 31 H 1.09008 * 109.47155 * 299.99881 * 3 2 1 32 32 H 1.08992 * 109.47526 * 300.00624 * 6 4 3 33 33 H 1.09005 * 109.46508 * 60.00033 * 6 4 3 34 34 H 1.08999 * 109.47057 * 179.97438 * 6 4 3 35 35 H 0.96994 * 120.00062 * 24.99422 * 7 4 3 36 36 H 1.08003 * 120.04126 * 359.97438 * 11 10 8 37 37 H 1.08001 * 119.84369 * 180.02562 * 12 11 10 38 38 H 1.07999 * 119.79696 * 180.27727 * 13 12 11 39 39 H 1.07998 * 119.96126 * 180.02562 * 14 13 12 40 40 H 0.96997 * 120.00161 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8533 0.8427 6 6 4.0799 2.8796 0.1263 7 7 4.0588 0.8587 -1.2509 8 6 5.2809 0.2921 -1.2980 9 8 5.9777 0.2660 -0.3019 10 6 5.7730 -0.2963 -2.5582 11 6 4.9758 -0.2691 -3.7047 12 6 5.4410 -0.8210 -4.8788 13 6 6.6976 -1.4033 -4.9285 14 6 7.4969 -1.4366 -3.8038 15 6 7.0448 -0.8856 -2.6124 16 8 7.8283 -0.9169 -1.5071 17 6 8.9876 -1.5991 -1.5977 18 1 9.2939 -2.0199 -2.5442 19 6 9.7868 -1.7607 -0.4758 20 7 9.4135 -1.2487 0.6767 21 14 11.3926 -2.7066 -0.6013 22 1 12.2844 -2.0398 -1.5840 23 1 12.0551 -2.7356 0.7274 24 1 11.1155 -4.0956 -1.0472 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6766 1.9564 -0.8901 32 1 3.7169 3.4689 -0.7157 33 1 3.7161 3.3140 1.0575 34 1 5.1699 2.8796 0.1272 35 1 3.5031 0.8798 -2.0455 36 1 3.9956 0.1832 -3.6710 37 1 4.8237 -0.7989 -5.7647 38 1 7.0555 -1.8293 -5.8542 39 1 8.4751 -1.8919 -3.8506 40 1 9.9726 -1.3613 1.4613 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000919806254.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:22 Heat of formation + Delta-G solvation = -53.073295 kcal Electronic energy + Delta-G solvation = -21548.544088 eV Core-core repulsion = 18328.624316 eV Total energy + Delta-G solvation = -3219.919772 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.63581 -38.34341 -36.38186 -36.07504 -33.18872 -32.31661 -31.25214 -29.49050 -28.87963 -26.65055 -25.36524 -23.35717 -21.88337 -21.42910 -20.54788 -19.82669 -18.00275 -17.50965 -16.19318 -15.86620 -14.78201 -14.66281 -14.43843 -14.28187 -14.11422 -13.80260 -13.72459 -13.50885 -12.83986 -12.79601 -12.58447 -12.45563 -12.10197 -11.92510 -11.69533 -11.40829 -11.28607 -11.11129 -10.89469 -10.84277 -10.77991 -10.69167 -10.50538 -10.44272 -9.54048 -8.85590 -8.77571 -8.47190 -8.23995 -7.28360 -6.42077 -4.02184 1.75127 2.34325 3.12940 3.15068 3.17468 3.77916 3.80606 3.95446 4.67144 4.72884 4.98109 5.01205 5.09785 5.20069 5.39710 5.44212 5.52037 5.53931 5.57917 5.66231 5.75487 5.78216 5.87225 5.91682 6.01845 6.06498 6.12549 6.15022 6.30268 6.38720 6.50161 6.59028 6.72512 6.93853 7.08086 7.10824 7.26582 7.31492 7.71989 7.94715 8.21715 8.97451 9.18196 9.70272 10.71687 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017191 B = 0.005079 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.345818 B = 5511.566116 C = 6531.415895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.127 4.127 3 C -0.124 4.124 4 C 0.144 3.856 5 H 0.086 0.914 6 C -0.162 4.162 7 N -0.738 5.738 8 C 0.554 3.446 9 O -0.502 6.502 10 C -0.226 4.226 11 C -0.039 4.039 12 C -0.231 4.231 13 C -0.052 4.052 14 C -0.239 4.239 15 C 0.189 3.811 16 O -0.123 6.123 17 C -0.405 4.405 18 H 0.093 0.907 19 C 0.045 3.955 20 N -0.833 5.833 21 Si 0.940 3.060 22 H -0.269 1.269 23 H -0.277 1.277 24 H -0.269 1.269 25 H 0.051 0.949 26 H 0.052 0.948 27 H 0.051 0.949 28 H 0.065 0.935 29 H 0.063 0.937 30 H 0.073 0.927 31 H 0.064 0.936 32 H 0.051 0.949 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.390 0.610 36 H 0.111 0.889 37 H 0.108 0.892 38 H 0.110 0.890 39 H 0.131 0.869 40 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.003 3.411 -5.063 14.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.164 4.164 3 C -0.162 4.162 4 C 0.039 3.961 5 H 0.104 0.896 6 C -0.221 4.221 7 N -0.393 5.393 8 C 0.344 3.656 9 O -0.376 6.376 10 C -0.231 4.231 11 C -0.057 4.057 12 C -0.251 4.251 13 C -0.070 4.070 14 C -0.258 4.258 15 C 0.129 3.871 16 O -0.022 6.022 17 C -0.480 4.480 18 H 0.110 0.890 19 C -0.163 4.163 20 N -0.464 5.464 21 Si 0.764 3.236 22 H -0.194 1.194 23 H -0.202 1.202 24 H -0.194 1.194 25 H 0.071 0.929 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.084 0.916 29 H 0.082 0.918 30 H 0.091 0.909 31 H 0.083 0.917 32 H 0.070 0.930 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.224 0.776 36 H 0.129 0.871 37 H 0.127 0.873 38 H 0.128 0.872 39 H 0.149 0.851 40 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.377 3.505 -3.765 13.403 hybrid contribution 0.520 -0.463 -0.653 0.955 sum -11.857 3.042 -4.418 13.014 Atomic orbital electron populations 1.21773 0.96122 1.01462 1.01451 1.21541 0.95302 0.96765 1.02839 1.21904 0.94515 0.97276 1.02484 1.20829 0.92599 0.94236 0.88438 0.89593 1.22178 1.02664 0.96191 1.01063 1.45978 1.18471 1.62227 1.12645 1.18225 0.80821 0.77961 0.88640 1.90939 1.55077 1.56107 1.35462 1.18897 0.95418 1.14252 0.94564 1.20757 0.97071 0.96048 0.91874 1.20458 0.98023 1.08798 0.97776 1.20890 0.93603 0.95600 0.96923 1.21153 1.02411 1.09150 0.93065 1.19289 0.89130 0.91156 0.87520 1.84177 1.28385 1.60056 1.29538 1.21448 0.95780 1.33368 0.97446 0.88973 1.25371 0.99480 0.97210 0.94206 1.70119 1.37010 1.39626 0.99675 0.85807 0.80064 0.79591 0.78104 1.19389 1.20166 1.19380 0.92939 0.92900 0.92958 0.91596 0.91830 0.90852 0.91737 0.92951 0.92291 0.91720 0.77594 0.87108 0.87341 0.87240 0.85130 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.33 9.91 37.16 0.37 -0.97 16 2 C -0.13 -1.38 5.82 -26.73 -0.16 -1.54 16 3 C -0.12 -1.31 4.75 -26.73 -0.13 -1.44 16 4 C 0.14 2.09 2.57 -67.93 -0.17 1.91 16 5 H 0.09 1.49 7.58 -51.93 -0.39 1.09 16 6 C -0.16 -2.25 9.48 37.16 0.35 -1.90 16 7 N -0.74 -11.92 4.48 -54.84 -0.25 -12.17 16 8 C 0.55 12.23 7.73 -12.47 -0.10 12.13 16 9 O -0.50 -13.78 14.83 -16.57 -0.25 -14.03 16 10 C -0.23 -4.96 5.89 -104.81 -0.62 -5.58 16 11 C -0.04 -0.67 9.53 -39.20 -0.37 -1.04 16 12 C -0.23 -3.83 10.03 -39.60 -0.40 -4.23 16 13 C -0.05 -0.92 10.03 -39.53 -0.40 -1.32 16 14 C -0.24 -5.18 9.16 -39.44 -0.36 -5.54 16 15 C 0.19 4.74 6.66 -38.60 -0.26 4.48 16 16 O -0.12 -3.68 7.84 -21.06 -0.17 -3.84 16 17 C -0.40 -11.55 9.49 30.90 0.29 -11.26 16 18 H 0.09 2.38 5.21 -52.48 -0.27 2.11 16 19 C 0.05 1.27 5.49 -17.52 -0.10 1.17 16 20 N -0.83 -25.29 13.67 55.48 0.76 -24.53 16 21 Si 0.94 20.66 29.55 -169.99 -5.02 15.63 16 22 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 23 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 24 H -0.27 -5.69 7.11 56.52 0.40 -5.29 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.45 8.14 -51.93 -0.42 0.03 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 28 H 0.07 0.77 7.75 -51.93 -0.40 0.37 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 31 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 32 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 34 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 35 H 0.39 5.11 6.63 -40.82 -0.27 4.84 16 36 H 0.11 1.48 6.40 -52.48 -0.34 1.14 16 37 H 0.11 1.45 8.06 -52.49 -0.42 1.03 16 38 H 0.11 1.60 8.06 -52.49 -0.42 1.17 16 39 H 0.13 2.79 5.64 -52.49 -0.30 2.50 16 40 H 0.27 7.54 8.31 -40.82 -0.34 7.20 16 LS Contribution 335.15 15.07 5.05 5.05 Total: -1.00 -33.99 335.15 -7.67 -41.66 By element: Atomic # 1 Polarization: 13.10 SS G_CDS: -5.76 Total: 7.34 kcal Atomic # 6 Polarization: -13.08 SS G_CDS: -2.04 Total: -15.12 kcal Atomic # 7 Polarization: -37.21 SS G_CDS: 0.51 Total: -36.70 kcal Atomic # 8 Polarization: -17.46 SS G_CDS: -0.41 Total: -17.87 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.63 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.99 -7.67 -41.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919806254.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.413 kcal (2) G-P(sol) polarization free energy of solvation -33.994 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.667 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.073 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds