Wall clock time and date at job start Mon Mar 30 2020 01:52:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53001 * 109.46960 * 2 1 4 4 C 1.53000 * 109.46960 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47285 * 304.99594 * 4 3 2 6 6 C 1.53003 * 109.46995 * 184.99577 * 4 3 2 7 7 N 1.46501 * 109.47144 * 65.00331 * 4 3 2 8 8 C 1.34780 * 119.99533 * 205.00001 * 7 4 3 9 9 O 1.21590 * 120.00046 * 359.97438 * 8 7 4 10 10 C 1.47535 * 119.99867 * 179.97438 * 8 7 4 11 11 C 1.39665 * 120.19576 * 359.97438 * 10 8 7 12 12 C 1.37830 * 119.92214 * 180.02562 * 11 10 8 13 13 C 1.38580 * 120.32046 * 359.97438 * 12 11 10 14 14 C 1.38026 * 120.40073 * 359.97438 * 13 12 11 15 15 C 1.38831 * 120.07205 * 0.02562 * 14 13 12 16 16 O 1.35519 * 120.16243 * 180.02562 * 15 14 13 17 17 C 1.34817 * 117.00144 * 354.39671 * 16 15 14 18 18 H 1.08011 * 119.99389 * 5.06697 * 17 16 15 19 19 C 1.38693 * 120.00626 * 185.06457 * 17 16 15 20 20 N 1.31517 * 119.99838 * 0.02562 * 19 17 16 21 21 Si 1.86797 * 120.00259 * 179.97438 * 19 17 16 22 22 H 1.48511 * 109.46998 * 60.00314 * 21 19 17 23 23 H 1.48501 * 109.47046 * 179.97438 * 21 19 17 24 24 H 1.48497 * 109.47494 * 300.00160 * 21 19 17 25 25 H 1.09003 * 109.47405 * 60.00434 * 1 2 3 26 26 H 1.08997 * 109.47262 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47034 * 300.00282 * 1 2 3 28 28 H 1.08994 * 109.47273 * 240.00212 * 2 1 3 29 29 H 1.08994 * 109.47240 * 119.99773 * 2 1 3 30 30 H 1.08995 * 109.47478 * 59.99989 * 3 2 1 31 31 H 1.09008 * 109.47155 * 299.99881 * 3 2 1 32 32 H 1.08992 * 109.47526 * 300.00624 * 6 4 3 33 33 H 1.09005 * 109.46508 * 60.00033 * 6 4 3 34 34 H 1.08999 * 109.47057 * 179.97438 * 6 4 3 35 35 H 0.96994 * 120.00062 * 24.99422 * 7 4 3 36 36 H 1.08003 * 120.04126 * 359.97438 * 11 10 8 37 37 H 1.08001 * 119.84369 * 180.02562 * 12 11 10 38 38 H 1.07999 * 119.79696 * 180.27727 * 13 12 11 39 39 H 1.07998 * 119.96126 * 180.02562 * 14 13 12 40 40 H 0.96997 * 120.00161 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 1 3.9330 0.8533 0.8427 6 6 4.0799 2.8796 0.1263 7 7 4.0588 0.8587 -1.2509 8 6 5.2809 0.2921 -1.2980 9 8 5.9777 0.2660 -0.3019 10 6 5.7730 -0.2963 -2.5582 11 6 4.9758 -0.2691 -3.7047 12 6 5.4410 -0.8210 -4.8788 13 6 6.6976 -1.4033 -4.9285 14 6 7.4969 -1.4366 -3.8038 15 6 7.0448 -0.8856 -2.6124 16 8 7.8283 -0.9169 -1.5071 17 6 8.9876 -1.5991 -1.5977 18 1 9.2939 -2.0199 -2.5442 19 6 9.7868 -1.7607 -0.4758 20 7 9.4135 -1.2487 0.6767 21 14 11.3926 -2.7066 -0.6013 22 1 12.2844 -2.0398 -1.5840 23 1 12.0551 -2.7356 0.7274 24 1 11.1155 -4.0956 -1.0472 25 1 -0.3634 0.5138 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5139 0.8899 28 1 1.8933 -0.5138 -0.8899 29 1 1.8933 -0.5138 0.8900 30 1 1.6767 1.9564 0.8899 31 1 1.6766 1.9564 -0.8901 32 1 3.7169 3.4689 -0.7157 33 1 3.7161 3.3140 1.0575 34 1 5.1699 2.8796 0.1272 35 1 3.5031 0.8798 -2.0455 36 1 3.9956 0.1832 -3.6710 37 1 4.8237 -0.7989 -5.7647 38 1 7.0555 -1.8293 -5.8542 39 1 8.4751 -1.8919 -3.8506 40 1 9.9726 -1.3613 1.4613 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000919806254.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:52:22 Heat of formation + Delta-G solvation = -75.663035 kcal Electronic energy + Delta-G solvation = -21549.523653 eV Core-core repulsion = 18328.624316 eV Total energy + Delta-G solvation = -3220.899337 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.31285 -39.99279 -38.04871 -37.48228 -34.44544 -34.28028 -32.68125 -30.90766 -30.54664 -27.58022 -27.36252 -24.90754 -23.34559 -22.60608 -21.77837 -21.41199 -19.83280 -19.20275 -17.87946 -17.26888 -16.36415 -16.16482 -16.03961 -15.78077 -15.55363 -15.29749 -15.20160 -14.87491 -14.42541 -14.21148 -14.09139 -13.59090 -13.54895 -13.16730 -12.97228 -12.88669 -12.69079 -12.50851 -12.36484 -12.35419 -12.15239 -11.84096 -11.61742 -11.51115 -11.40547 -10.82440 -10.55420 -10.04079 -9.75901 -9.02863 -8.44321 -6.15614 0.14228 0.73489 1.31606 1.44808 1.49723 2.14058 2.16073 2.34849 2.88466 3.23810 3.48038 3.72201 4.00658 4.07223 4.08920 4.12107 4.29525 4.39015 4.49740 4.53295 4.62314 4.66456 4.77262 4.83046 4.90462 4.97960 5.02848 5.06622 5.09879 5.16732 5.27845 5.31569 5.34734 5.49280 5.50196 5.62219 5.70105 5.71602 5.96318 6.18001 6.77350 6.94764 7.55921 7.81198 8.76087 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.017191 B = 0.005079 C = 0.004286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1628.345818 B = 5511.566116 C = 6531.415895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.129 4.129 3 C -0.110 4.110 4 C 0.138 3.862 5 H 0.046 0.954 6 C -0.157 4.157 7 N -0.710 5.710 8 C 0.547 3.453 9 O -0.570 6.570 10 C -0.245 4.245 11 C -0.030 4.030 12 C -0.201 4.201 13 C -0.041 4.041 14 C -0.259 4.259 15 C 0.147 3.853 16 O -0.189 6.189 17 C -0.430 4.430 18 H 0.106 0.894 19 C -0.022 4.022 20 N -0.906 5.906 21 Si 1.022 2.978 22 H -0.254 1.254 23 H -0.273 1.273 24 H -0.254 1.254 25 H 0.067 0.933 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.056 0.944 29 H 0.041 0.959 30 H 0.092 0.908 31 H 0.093 0.907 32 H 0.078 0.922 33 H 0.082 0.918 34 H 0.018 0.982 35 H 0.409 0.591 36 H 0.160 0.840 37 H 0.165 0.835 38 H 0.154 0.846 39 H 0.122 0.878 40 H 0.270 0.730 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.098 3.726 -9.069 18.849 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.167 4.167 3 C -0.147 4.147 4 C 0.034 3.966 5 H 0.064 0.936 6 C -0.215 4.215 7 N -0.366 5.366 8 C 0.337 3.663 9 O -0.450 6.450 10 C -0.250 4.250 11 C -0.048 4.048 12 C -0.219 4.219 13 C -0.059 4.059 14 C -0.278 4.278 15 C 0.092 3.908 16 O -0.091 6.091 17 C -0.505 4.505 18 H 0.123 0.877 19 C -0.221 4.221 20 N -0.542 5.542 21 Si 0.840 3.160 22 H -0.178 1.178 23 H -0.198 1.198 24 H -0.178 1.178 25 H 0.087 0.913 26 H 0.071 0.929 27 H 0.079 0.921 28 H 0.075 0.925 29 H 0.060 0.940 30 H 0.110 0.890 31 H 0.111 0.889 32 H 0.097 0.903 33 H 0.100 0.900 34 H 0.037 0.963 35 H 0.247 0.753 36 H 0.178 0.822 37 H 0.182 0.818 38 H 0.171 0.829 39 H 0.140 0.860 40 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -15.571 3.839 -7.869 17.864 hybrid contribution 1.097 -0.472 0.261 1.223 sum -14.474 3.367 -7.607 16.694 Atomic orbital electron populations 1.21724 0.93955 1.01913 1.02631 1.21549 0.97148 0.96644 1.01376 1.21846 0.90525 0.97585 1.04777 1.21012 0.95617 0.93760 0.86247 0.93592 1.22126 0.99706 0.96155 1.03519 1.45739 1.16512 1.60158 1.14143 1.18537 0.81901 0.77817 0.88048 1.90921 1.57395 1.58892 1.37742 1.19365 0.95250 1.14105 0.96294 1.21304 0.98205 0.95045 0.90261 1.21182 0.97301 1.04490 0.98916 1.21432 0.93498 0.94123 0.96868 1.21299 1.03123 1.09845 0.93519 1.20118 0.90364 0.92425 0.87920 1.84183 1.29766 1.63138 1.32062 1.22007 0.96325 1.33851 0.98354 0.87655 1.26762 1.03734 0.98207 0.93414 1.70322 1.39432 1.43527 1.00881 0.84627 0.74591 0.78316 0.78439 1.17763 1.19775 1.17815 0.91348 0.92920 0.92144 0.92550 0.94042 0.88968 0.88877 0.90323 0.89954 0.96258 0.75256 0.82226 0.81794 0.82879 0.85990 0.92065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.91 71.98 0.71 -1.41 16 2 C -0.13 -2.60 5.82 30.59 0.18 -2.43 16 3 C -0.11 -2.03 4.75 30.59 0.15 -1.88 16 4 C 0.14 4.01 2.57 44.99 0.12 4.12 16 5 H 0.05 1.72 7.58 -2.39 -0.02 1.70 16 6 C -0.16 -4.31 9.48 71.98 0.68 -3.63 16 7 N -0.71 -22.60 4.48 -445.69 -2.00 -24.59 16 8 C 0.55 25.28 7.73 86.69 0.67 25.95 16 9 O -0.57 -34.36 14.83 16.90 0.25 -34.11 16 10 C -0.25 -10.84 5.89 -19.99 -0.12 -10.96 16 11 C -0.03 -0.90 9.53 22.52 0.21 -0.69 16 12 C -0.20 -5.39 10.03 22.25 0.22 -5.17 16 13 C -0.04 -1.30 10.03 22.30 0.22 -1.07 16 14 C -0.26 -11.24 9.16 22.36 0.20 -11.04 16 15 C 0.15 7.72 6.66 22.91 0.15 7.87 16 16 O -0.19 -12.26 7.84 0.82 0.01 -12.25 16 17 C -0.43 -26.45 9.49 67.93 0.64 -25.80 16 18 H 0.11 5.81 5.21 -2.91 -0.02 5.79 16 19 C -0.02 -1.33 5.49 84.85 0.47 -0.86 16 20 N -0.91 -60.17 13.67 21.62 0.30 -59.87 16 21 Si 1.02 44.84 29.55 68.60 2.03 46.87 16 22 H -0.25 -10.30 7.11 99.48 0.71 -9.60 16 23 H -0.27 -11.59 7.11 99.48 0.71 -10.88 16 24 H -0.25 -10.34 7.11 99.48 0.71 -9.63 16 25 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 27 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 28 H 0.06 1.22 7.75 -2.39 -0.02 1.20 16 29 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 31 H 0.09 1.27 8.14 -2.38 -0.02 1.25 16 32 H 0.08 1.73 8.14 -2.39 -0.02 1.71 16 33 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 34 H 0.02 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.41 9.41 6.63 -92.71 -0.61 8.80 16 36 H 0.16 3.24 6.40 -2.91 -0.02 3.22 16 37 H 0.16 2.84 8.06 -2.91 -0.02 2.81 16 38 H 0.15 3.54 8.06 -2.91 -0.02 3.52 16 39 H 0.12 5.38 5.64 -2.91 -0.02 5.36 16 40 H 0.27 16.47 8.31 -92.71 -0.77 15.70 16 Total: -1.00 -88.30 335.15 5.53 -82.77 By element: Atomic # 1 Polarization: 27.77 SS G_CDS: 0.43 Total: 28.20 kcal Atomic # 6 Polarization: -31.52 SS G_CDS: 4.52 Total: -27.00 kcal Atomic # 7 Polarization: -82.77 SS G_CDS: -1.70 Total: -84.47 kcal Atomic # 8 Polarization: -46.62 SS G_CDS: 0.26 Total: -46.36 kcal Atomic # 14 Polarization: 44.84 SS G_CDS: 2.03 Total: 46.87 kcal Total: -88.30 5.53 -82.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000919806254.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.106 kcal (2) G-P(sol) polarization free energy of solvation -88.295 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.527 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.769 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.663 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds