Wall clock time and date at job start Mon Mar 30 2020 02:46:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47303 * 2 1 4 4 C 1.53008 * 109.46986 * 239.99803 * 2 1 3 5 5 O 1.42908 * 109.46984 * 120.00053 * 2 1 3 6 6 C 1.42902 * 113.99600 * 59.99956 * 5 2 1 7 7 C 1.50705 * 109.46679 * 180.02562 * 6 5 2 8 8 C 1.38087 * 120.04233 * 0.27495 * 7 6 5 9 9 C 1.38311 * 120.08027 * 180.32320 * 8 7 6 10 10 C 1.38353 * 120.16791 * 359.67954 * 9 8 7 11 11 C 1.38041 * 120.08217 * 0.02562 * 10 9 8 12 12 C 1.39009 * 120.03981 * 180.02562 * 7 6 5 13 13 N 1.39532 * 120.08664 * 359.97438 * 12 7 6 14 14 C 1.34766 * 120.00351 * 154.14732 * 13 12 7 15 15 O 1.21743 * 120.00226 * 3.96251 * 14 13 12 16 16 C 1.46168 * 120.00290 * 183.68810 * 14 13 12 17 17 H 1.08008 * 119.99792 * 355.23838 * 16 14 13 18 18 C 1.40122 * 120.00676 * 175.24115 * 16 14 13 19 19 N 1.30639 * 119.99751 * 5.03671 * 18 16 14 20 20 Si 1.86798 * 120.00427 * 185.03610 * 18 16 14 21 21 H 1.48505 * 109.47096 * 85.00209 * 20 18 16 22 22 H 1.48508 * 109.47172 * 204.99759 * 20 18 16 23 23 H 1.48500 * 109.47173 * 325.00080 * 20 18 16 24 24 H 1.08999 * 109.46959 * 300.00031 * 1 2 3 25 25 H 1.08996 * 109.47047 * 59.99574 * 1 2 3 26 26 H 1.08999 * 109.47499 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47080 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47417 * 300.00200 * 3 2 1 29 29 H 1.08999 * 109.47138 * 60.00079 * 3 2 1 30 30 H 1.09001 * 109.46890 * 300.00006 * 4 2 1 31 31 H 1.08996 * 109.46718 * 60.00422 * 4 2 1 32 32 H 1.08999 * 109.46589 * 180.02562 * 4 2 1 33 33 H 1.08991 * 109.47559 * 60.00234 * 6 5 2 34 34 H 1.08998 * 109.47350 * 299.99734 * 6 5 2 35 35 H 1.07992 * 119.95728 * 359.97438 * 8 7 6 36 36 H 1.07996 * 119.91777 * 179.70266 * 9 8 7 37 37 H 1.07999 * 119.95964 * 180.02562 * 10 9 8 38 38 H 1.08004 * 120.03972 * 180.02562 * 11 10 9 39 39 H 0.97009 * 119.99608 * 334.15034 * 13 12 7 40 40 H 0.96999 * 120.00190 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0064 -0.6737 1.1668 6 6 1.5846 -2.0356 1.2645 7 6 2.1409 -2.6444 2.5258 8 6 2.9216 -1.8845 3.3743 9 6 3.4381 -2.4444 4.5287 10 6 3.1695 -3.7652 4.8413 11 6 2.3850 -4.5293 4.0011 12 6 1.8646 -3.9702 2.8391 13 7 1.0714 -4.7397 1.9872 14 6 1.2085 -6.0802 1.9664 15 8 1.9723 -6.6260 2.7416 16 6 0.4358 -6.8793 1.0174 17 1 -0.3009 -6.4048 0.3859 18 6 0.6507 -8.2610 0.9266 19 7 1.4692 -8.8506 1.7567 20 14 -0.2333 -9.2599 -0.3811 21 1 0.5336 -9.2012 -1.6514 22 1 -0.3441 -10.6720 0.0653 23 1 -1.5920 -8.7008 -0.5968 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 1.9491 -2.5916 0.4008 34 1 0.4958 -2.0778 1.2907 35 1 3.1337 -0.8534 3.1333 36 1 4.0523 -1.8491 5.1880 37 1 3.5742 -4.1988 5.7438 38 1 2.1754 -5.5601 4.2460 39 1 0.4213 -4.3096 1.4097 40 1 1.6183 -9.8070 1.6937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928392097.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:05 Heat of formation + Delta-G solvation = -67.554688 kcal Electronic energy + Delta-G solvation = -21564.240459 eV Core-core repulsion = 18343.692726 eV Total energy + Delta-G solvation = -3220.547733 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.64077 -38.63437 -36.87113 -33.76708 -33.44627 -32.52632 -30.63722 -29.05188 -27.71493 -27.47294 -26.34622 -25.34000 -22.32065 -20.87893 -19.85842 -19.63040 -17.61512 -16.57729 -16.23433 -15.69399 -15.45475 -15.36557 -14.45027 -14.22572 -14.17480 -13.74729 -13.28247 -13.15786 -12.94612 -12.66425 -12.43669 -12.24777 -12.19694 -11.84254 -11.75539 -11.70861 -11.38144 -11.24911 -11.11993 -10.96484 -10.69991 -10.50038 -10.39756 -10.30196 -9.57873 -9.35159 -8.91199 -8.10386 -7.64500 -6.99566 -6.38191 -4.85954 2.00292 2.20691 3.04919 3.11530 3.14297 3.68120 3.95793 4.28129 4.56950 4.61408 4.73519 4.76656 4.94082 5.32661 5.37897 5.43656 5.50296 5.55092 5.57285 5.59934 5.68891 5.73010 5.73595 5.78323 5.81810 5.94747 6.07204 6.16819 6.20579 6.38585 6.47513 6.77787 6.98416 7.15522 7.24065 7.30045 7.44580 7.56157 7.69773 8.05931 8.15562 8.81057 9.16820 10.33562 10.52101 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.005142 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.733587 B = 5444.490950 C = 6949.893459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.106 3.894 3 C -0.136 4.136 4 C -0.180 4.180 5 O -0.371 6.371 6 C 0.111 3.889 7 C -0.156 4.156 8 C -0.078 4.078 9 C -0.175 4.175 10 C -0.102 4.102 11 C -0.146 4.146 12 C 0.196 3.804 13 N -0.695 5.695 14 C 0.543 3.457 15 O -0.556 6.556 16 C -0.539 4.539 17 H 0.072 0.928 18 C 0.088 3.912 19 N -0.758 5.758 20 Si 0.912 3.088 21 H -0.270 1.270 22 H -0.278 1.278 23 H -0.264 1.264 24 H 0.063 0.937 25 H 0.064 0.936 26 H 0.062 0.938 27 H 0.062 0.938 28 H 0.067 0.933 29 H 0.062 0.938 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.064 0.936 33 H 0.061 0.939 34 H 0.055 0.945 35 H 0.122 0.878 36 H 0.109 0.891 37 H 0.113 0.887 38 H 0.160 0.840 39 H 0.390 0.610 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.141 15.384 -3.627 15.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.237 4.237 2 C 0.067 3.933 3 C -0.193 4.193 4 C -0.238 4.238 5 O -0.290 6.290 6 C 0.035 3.965 7 C -0.160 4.160 8 C -0.096 4.096 9 C -0.194 4.194 10 C -0.121 4.121 11 C -0.167 4.167 12 C 0.097 3.903 13 N -0.336 5.336 14 C 0.350 3.650 15 O -0.438 6.438 16 C -0.575 4.575 17 H 0.090 0.910 18 C -0.134 4.134 19 N -0.386 5.386 20 Si 0.737 3.263 21 H -0.195 1.195 22 H -0.203 1.203 23 H -0.188 1.188 24 H 0.082 0.918 25 H 0.083 0.917 26 H 0.081 0.919 27 H 0.081 0.919 28 H 0.086 0.914 29 H 0.081 0.919 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.083 0.917 33 H 0.079 0.921 34 H 0.073 0.927 35 H 0.140 0.860 36 H 0.127 0.873 37 H 0.131 0.869 38 H 0.178 0.822 39 H 0.223 0.777 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -0.439 14.787 -2.943 15.084 hybrid contribution -0.866 -0.409 -1.195 1.531 sum -1.306 14.379 -4.137 15.019 Atomic orbital electron populations 1.22442 0.95888 1.02806 1.02554 1.21456 0.93059 0.93076 0.85721 1.21737 1.01904 0.93473 1.02193 1.22449 1.02281 1.01379 0.97669 1.87921 1.74473 1.24042 1.42593 1.21013 0.97470 0.82132 0.95855 1.19305 1.04932 0.94005 0.97771 1.20558 0.96261 0.99220 0.93583 1.20896 1.04057 0.95774 0.98687 1.21059 0.98189 0.93823 0.99007 1.21911 0.99679 1.02586 0.92521 1.17796 0.93017 0.89237 0.90290 1.44097 1.39274 1.08653 1.41568 1.18378 0.83364 0.78405 0.84837 1.90530 1.41136 1.69739 1.42420 1.20829 1.22490 0.92348 1.21830 0.91021 1.25729 0.94178 0.97902 0.95590 1.69975 1.27293 1.10756 1.30529 0.86302 0.80298 0.78809 0.80932 1.19484 1.20282 1.18818 0.91756 0.91725 0.91916 0.91865 0.91384 0.91904 0.91811 0.91743 0.91712 0.92145 0.92749 0.86001 0.87292 0.86886 0.82244 0.77681 0.91641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.82 8.25 37.16 0.31 -1.52 16 2 C 0.11 1.20 1.14 -90.62 -0.10 1.10 16 3 C -0.14 -1.27 8.84 37.15 0.33 -0.94 16 4 C -0.18 -1.94 8.25 37.16 0.31 -1.64 16 5 O -0.37 -5.35 8.47 -35.23 -0.30 -5.65 16 6 C 0.11 1.75 4.50 36.01 0.16 1.91 16 7 C -0.16 -2.91 5.90 -104.39 -0.62 -3.52 16 8 C -0.08 -1.35 9.37 -39.61 -0.37 -1.72 16 9 C -0.17 -2.97 10.04 -39.51 -0.40 -3.36 16 10 C -0.10 -1.91 10.04 -39.61 -0.40 -2.31 16 11 C -0.15 -3.26 8.79 -39.35 -0.35 -3.60 16 12 C 0.20 4.24 6.43 -83.77 -0.54 3.70 16 13 N -0.69 -15.63 5.14 -11.20 -0.06 -15.69 16 14 C 0.54 14.88 7.62 -13.08 -0.10 14.78 16 15 O -0.56 -17.01 11.94 5.15 0.06 -16.94 16 16 C -0.54 -14.49 9.53 -35.69 -0.34 -14.83 16 17 H 0.07 1.74 7.85 -52.48 -0.41 1.33 16 18 C 0.09 2.33 5.50 -17.35 -0.10 2.23 16 19 N -0.76 -21.69 11.84 55.55 0.66 -21.03 16 20 Si 0.91 19.23 29.56 -169.99 -5.03 14.20 16 21 H -0.27 -5.58 7.11 56.52 0.40 -5.18 16 22 H -0.28 -5.74 7.11 56.52 0.40 -5.34 16 23 H -0.26 -5.37 7.11 56.52 0.40 -4.97 16 24 H 0.06 0.66 8.14 -51.93 -0.42 0.23 16 25 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 26 H 0.06 0.67 6.54 -51.93 -0.34 0.33 16 27 H 0.06 0.60 8.14 -51.92 -0.42 0.18 16 28 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 30 H 0.06 0.74 6.54 -51.93 -0.34 0.40 16 31 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 32 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 33 H 0.06 0.97 6.42 -51.93 -0.33 0.64 16 34 H 0.05 0.79 6.14 -51.93 -0.32 0.47 16 35 H 0.12 1.93 7.00 -52.49 -0.37 1.56 16 36 H 0.11 1.54 8.06 -52.49 -0.42 1.11 16 37 H 0.11 1.84 8.06 -52.49 -0.42 1.42 16 38 H 0.16 4.06 5.52 -52.48 -0.29 3.77 16 39 H 0.39 7.56 7.67 -40.82 -0.31 7.24 16 40 H 0.27 7.07 8.29 -40.82 -0.34 6.74 16 LS Contribution 327.58 15.07 4.94 4.94 Total: -1.00 -31.59 327.58 -7.58 -39.17 By element: Atomic # 1 Polarization: 16.39 SS G_CDS: -5.65 Total: 10.73 kcal Atomic # 6 Polarization: -7.52 SS G_CDS: -2.20 Total: -9.72 kcal Atomic # 7 Polarization: -37.32 SS G_CDS: 0.60 Total: -36.72 kcal Atomic # 8 Polarization: -22.36 SS G_CDS: -0.24 Total: -22.59 kcal Atomic # 14 Polarization: 19.23 SS G_CDS: -5.03 Total: 14.20 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.59 -7.58 -39.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928392097.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -28.389 kcal (2) G-P(sol) polarization free energy of solvation -31.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.975 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.166 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.555 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds