Wall clock time and date at job start Mon Mar 30 2020 02:46:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52992 * 109.47303 * 2 1 4 4 C 1.53008 * 109.46986 * 239.99803 * 2 1 3 5 5 O 1.42908 * 109.46984 * 120.00053 * 2 1 3 6 6 C 1.42902 * 113.99600 * 59.99956 * 5 2 1 7 7 C 1.50705 * 109.46679 * 180.02562 * 6 5 2 8 8 C 1.38087 * 120.04233 * 0.27495 * 7 6 5 9 9 C 1.38311 * 120.08027 * 180.32320 * 8 7 6 10 10 C 1.38353 * 120.16791 * 359.67954 * 9 8 7 11 11 C 1.38041 * 120.08217 * 0.02562 * 10 9 8 12 12 C 1.39009 * 120.03981 * 180.02562 * 7 6 5 13 13 N 1.39532 * 120.08664 * 359.97438 * 12 7 6 14 14 C 1.34766 * 120.00351 * 154.14732 * 13 12 7 15 15 O 1.21743 * 120.00226 * 3.96251 * 14 13 12 16 16 C 1.46168 * 120.00290 * 183.68810 * 14 13 12 17 17 H 1.08008 * 119.99792 * 355.23838 * 16 14 13 18 18 C 1.40122 * 120.00676 * 175.24115 * 16 14 13 19 19 N 1.30639 * 119.99751 * 5.03671 * 18 16 14 20 20 Si 1.86798 * 120.00427 * 185.03610 * 18 16 14 21 21 H 1.48505 * 109.47096 * 85.00209 * 20 18 16 22 22 H 1.48508 * 109.47172 * 204.99759 * 20 18 16 23 23 H 1.48500 * 109.47173 * 325.00080 * 20 18 16 24 24 H 1.08999 * 109.46959 * 300.00031 * 1 2 3 25 25 H 1.08996 * 109.47047 * 59.99574 * 1 2 3 26 26 H 1.08999 * 109.47499 * 179.97438 * 1 2 3 27 27 H 1.09007 * 109.47080 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47417 * 300.00200 * 3 2 1 29 29 H 1.08999 * 109.47138 * 60.00079 * 3 2 1 30 30 H 1.09001 * 109.46890 * 300.00006 * 4 2 1 31 31 H 1.08996 * 109.46718 * 60.00422 * 4 2 1 32 32 H 1.08999 * 109.46589 * 180.02562 * 4 2 1 33 33 H 1.08991 * 109.47559 * 60.00234 * 6 5 2 34 34 H 1.08998 * 109.47350 * 299.99734 * 6 5 2 35 35 H 1.07992 * 119.95728 * 359.97438 * 8 7 6 36 36 H 1.07996 * 119.91777 * 179.70266 * 9 8 7 37 37 H 1.07999 * 119.95964 * 180.02562 * 10 9 8 38 38 H 1.08004 * 120.03972 * 180.02562 * 11 10 9 39 39 H 0.97009 * 119.99608 * 334.15034 * 13 12 7 40 40 H 0.96999 * 120.00190 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0400 -0.7213 -1.2493 5 8 2.0064 -0.6737 1.1668 6 6 1.5846 -2.0356 1.2645 7 6 2.1409 -2.6444 2.5258 8 6 2.9216 -1.8845 3.3743 9 6 3.4381 -2.4444 4.5287 10 6 3.1695 -3.7652 4.8413 11 6 2.3850 -4.5293 4.0011 12 6 1.8646 -3.9702 2.8391 13 7 1.0714 -4.7397 1.9872 14 6 1.2085 -6.0802 1.9664 15 8 1.9723 -6.6260 2.7416 16 6 0.4358 -6.8793 1.0174 17 1 -0.3009 -6.4048 0.3859 18 6 0.6507 -8.2610 0.9266 19 7 1.4692 -8.8506 1.7567 20 14 -0.2333 -9.2599 -0.3811 21 1 0.5336 -9.2012 -1.6514 22 1 -0.3441 -10.6720 0.0653 23 1 -1.5920 -8.7008 -0.5968 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0276 -0.0005 27 1 3.1301 1.4424 0.0005 28 1 1.6767 1.9563 -0.8899 29 1 1.6767 1.9562 0.8900 30 1 1.6766 -1.7490 -1.2492 31 1 1.6767 -0.2075 -2.1392 32 1 3.1300 -0.7217 -1.2490 33 1 1.9491 -2.5916 0.4008 34 1 0.4958 -2.0778 1.2907 35 1 3.1337 -0.8534 3.1333 36 1 4.0523 -1.8491 5.1880 37 1 3.5742 -4.1988 5.7438 38 1 2.1754 -5.5601 4.2460 39 1 0.4213 -4.3096 1.4097 40 1 1.6183 -9.8070 1.6937 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928392097.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:04 Heat of formation + Delta-G solvation = -87.223385 kcal Electronic energy + Delta-G solvation = -21565.093358 eV Core-core repulsion = 18343.692726 eV Total energy + Delta-G solvation = -3221.400631 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.15014 -39.86597 -38.64050 -35.38515 -34.80461 -34.45544 -32.03693 -30.73267 -28.64388 -28.28627 -28.18710 -26.65069 -23.99747 -22.37749 -21.51624 -20.76037 -19.46655 -18.09921 -17.62839 -17.32248 -16.90799 -16.49430 -16.13252 -15.55924 -15.43073 -15.00454 -14.87030 -14.53705 -14.47787 -14.23244 -13.74272 -13.48886 -13.21321 -13.02123 -12.88100 -12.79671 -12.77708 -12.67843 -12.61749 -12.30545 -12.21539 -12.05901 -11.95026 -11.36324 -11.15345 -10.88300 -10.59066 -9.81473 -9.50381 -8.69372 -8.38116 -6.96225 0.49072 0.64613 1.38973 1.40600 1.55388 2.19363 2.36380 2.61219 2.87639 2.97669 3.54671 3.83274 3.94427 4.04207 4.13648 4.21014 4.23929 4.36395 4.45649 4.61843 4.66570 4.69211 4.76331 4.84621 4.91249 4.95221 4.97800 5.00368 5.17970 5.22992 5.25540 5.37664 5.40456 5.52210 5.61038 5.73455 5.81447 5.97939 6.14272 6.35030 6.41878 6.75945 7.29032 8.31660 8.54402 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015953 B = 0.005142 C = 0.004028 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1754.733587 B = 5444.490950 C = 6949.893459 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.096 3.904 3 C -0.133 4.133 4 C -0.180 4.180 5 O -0.381 6.381 6 C 0.119 3.881 7 C -0.151 4.151 8 C -0.077 4.077 9 C -0.158 4.158 10 C -0.105 4.105 11 C -0.178 4.178 12 C 0.163 3.837 13 N -0.687 5.687 14 C 0.528 3.472 15 O -0.600 6.600 16 C -0.565 4.565 17 H 0.093 0.907 18 C 0.032 3.968 19 N -0.812 5.812 20 Si 1.001 2.999 21 H -0.260 1.260 22 H -0.273 1.273 23 H -0.248 1.248 24 H 0.062 0.938 25 H 0.085 0.915 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.091 0.909 29 H 0.063 0.937 30 H 0.049 0.951 31 H 0.086 0.914 32 H 0.057 0.943 33 H 0.054 0.946 34 H 0.065 0.935 35 H 0.146 0.854 36 H 0.150 0.850 37 H 0.134 0.866 38 H 0.118 0.882 39 H 0.403 0.597 40 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.709 17.705 -5.101 18.504 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.058 3.942 3 C -0.190 4.190 4 C -0.237 4.237 5 O -0.301 6.301 6 C 0.043 3.957 7 C -0.155 4.155 8 C -0.095 4.095 9 C -0.177 4.177 10 C -0.124 4.124 11 C -0.199 4.199 12 C 0.065 3.935 13 N -0.329 5.329 14 C 0.335 3.665 15 O -0.486 6.486 16 C -0.601 4.601 17 H 0.111 0.889 18 C -0.185 4.185 19 N -0.441 5.441 20 Si 0.819 3.181 21 H -0.185 1.185 22 H -0.197 1.197 23 H -0.171 1.171 24 H 0.082 0.918 25 H 0.104 0.896 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.109 0.891 29 H 0.082 0.918 30 H 0.068 0.932 31 H 0.105 0.895 32 H 0.076 0.924 33 H 0.072 0.928 34 H 0.083 0.917 35 H 0.163 0.837 36 H 0.167 0.833 37 H 0.152 0.848 38 H 0.136 0.864 39 H 0.238 0.762 40 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.016 17.179 -4.416 17.767 hybrid contribution -0.624 -0.955 -0.666 1.321 sum -1.640 16.224 -5.082 17.080 Atomic orbital electron populations 1.22434 0.94967 1.02538 1.03602 1.21780 0.93930 0.93829 0.84691 1.21758 1.01722 0.92092 1.03406 1.22451 1.01841 1.00877 0.98531 1.87883 1.74909 1.23012 1.44326 1.20830 0.97815 0.82994 0.94049 1.19578 1.04259 0.92689 0.98965 1.20925 0.95250 1.00094 0.93251 1.21324 1.02793 0.94917 0.98650 1.21276 0.97369 0.94600 0.99118 1.21697 1.02248 1.01441 0.94466 1.17989 0.94383 0.90597 0.90496 1.43643 1.39844 1.07399 1.42025 1.18768 0.83153 0.80013 0.84595 1.90511 1.42887 1.71278 1.43927 1.21372 1.23175 0.93335 1.22182 0.88921 1.26988 0.94608 0.99014 0.97900 1.70138 1.29407 1.11473 1.33034 0.84984 0.79306 0.76645 0.77130 1.18487 1.19724 1.17085 0.91844 0.89583 0.92839 0.92192 0.89065 0.91830 0.93152 0.89476 0.92402 0.92769 0.91707 0.83673 0.83253 0.84849 0.86436 0.76166 0.91165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.19 8.25 71.98 0.59 -2.60 16 2 C 0.10 1.95 1.14 -10.79 -0.01 1.94 16 3 C -0.13 -2.09 8.84 71.98 0.64 -1.45 16 4 C -0.18 -3.53 8.25 71.98 0.59 -2.94 16 5 O -0.38 -10.27 8.47 -148.98 -1.26 -11.53 16 6 C 0.12 3.64 4.50 71.24 0.32 3.96 16 7 C -0.15 -5.55 5.90 -19.71 -0.12 -5.67 16 8 C -0.08 -2.50 9.37 22.25 0.21 -2.29 16 9 C -0.16 -4.97 10.04 22.31 0.22 -4.74 16 10 C -0.11 -3.91 10.04 22.25 0.22 -3.69 16 11 C -0.18 -8.31 8.79 22.42 0.20 -8.11 16 12 C 0.16 7.29 6.43 38.29 0.25 7.54 16 13 N -0.69 -32.21 5.14 -307.55 -1.58 -33.79 16 14 C 0.53 30.40 7.62 86.30 0.66 31.06 16 15 O -0.60 -39.23 11.94 -4.49 -0.05 -39.28 16 16 C -0.57 -31.15 9.53 24.79 0.24 -30.91 16 17 H 0.09 4.52 7.85 -2.91 -0.02 4.49 16 18 C 0.03 1.70 5.50 85.33 0.47 2.17 16 19 N -0.81 -48.37 11.84 21.85 0.26 -48.12 16 20 Si 1.00 39.51 29.56 68.60 2.03 41.54 16 21 H -0.26 -9.82 7.11 99.48 0.71 -9.12 16 22 H -0.27 -10.41 7.11 99.48 0.71 -9.71 16 23 H -0.25 -9.04 7.11 99.48 0.71 -8.33 16 24 H 0.06 1.15 8.14 -2.39 -0.02 1.13 16 25 H 0.09 1.16 8.14 -2.39 -0.02 1.14 16 26 H 0.05 1.05 6.54 -2.39 -0.02 1.03 16 27 H 0.06 0.98 8.14 -2.38 -0.02 0.96 16 28 H 0.09 1.02 8.14 -2.39 -0.02 1.00 16 29 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 30 H 0.05 1.12 6.54 -2.39 -0.02 1.10 16 31 H 0.09 1.29 8.14 -2.39 -0.02 1.27 16 32 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 33 H 0.05 1.73 6.42 -2.39 -0.02 1.71 16 34 H 0.07 1.84 6.14 -2.39 -0.01 1.82 16 35 H 0.15 4.10 7.00 -2.91 -0.02 4.07 16 36 H 0.15 3.53 8.06 -2.91 -0.02 3.51 16 37 H 0.13 4.29 8.06 -2.91 -0.02 4.26 16 38 H 0.12 6.52 5.52 -2.91 -0.02 6.50 16 39 H 0.40 16.06 7.67 -92.70 -0.71 15.35 16 40 H 0.28 14.99 8.29 -92.71 -0.77 14.22 16 Total: -1.00 -72.54 327.58 4.21 -68.33 By element: Atomic # 1 Polarization: 38.26 SS G_CDS: 0.34 Total: 38.60 kcal Atomic # 6 Polarization: -20.22 SS G_CDS: 4.48 Total: -15.74 kcal Atomic # 7 Polarization: -80.58 SS G_CDS: -1.32 Total: -81.90 kcal Atomic # 8 Polarization: -49.50 SS G_CDS: -1.32 Total: -50.81 kcal Atomic # 14 Polarization: 39.51 SS G_CDS: 2.03 Total: 41.54 kcal Total: -72.54 4.21 -68.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928392097.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.895 kcal (2) G-P(sol) polarization free energy of solvation -72.535 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.430 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.329 kcal (6) G-S(sol) free energy of system = (1) + (5) -87.223 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds