Wall clock time and date at job start Mon Mar 30 2020 01:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47024 * 2 1 4 4 C 1.53002 * 109.46587 * 119.99288 * 2 1 3 5 5 H 1.09004 * 109.46974 * 180.47004 * 4 2 1 6 6 O 1.42897 * 109.47449 * 300.47197 * 4 2 1 7 7 C 1.50701 * 109.47083 * 60.47507 * 4 2 1 8 8 O 1.21286 * 119.99687 * 248.75798 * 7 4 2 9 9 N 1.34777 * 120.00177 * 68.75444 * 7 4 2 10 10 C 1.39926 * 119.99831 * 184.08156 * 9 7 4 11 11 C 1.38867 * 120.07434 * 324.79212 * 10 9 7 12 12 C 1.38108 * 119.93006 * 179.72553 * 11 10 9 13 13 C 1.38278 * 120.07341 * 0.27108 * 12 11 10 14 14 C 1.50699 * 119.93149 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46931 * 90.00461 * 14 13 12 16 16 H 1.08003 * 119.99901 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00127 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00303 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99793 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47461 * 89.99757 * 19 17 15 21 21 H 1.48503 * 109.47055 * 209.99851 * 19 17 15 22 22 H 1.48506 * 109.47349 * 329.99485 * 19 17 15 23 23 C 1.38289 * 120.13788 * 359.96009 * 13 12 11 24 24 C 1.38109 * 120.06849 * 359.97438 * 23 13 12 25 25 H 1.09002 * 109.47612 * 300.00742 * 1 2 3 26 26 H 1.09004 * 109.46715 * 60.00951 * 1 2 3 27 27 H 1.09004 * 109.46979 * 180.02562 * 1 2 3 28 28 H 1.08989 * 109.47390 * 239.99463 * 2 1 3 29 29 H 1.09003 * 109.47427 * 64.93607 * 3 2 1 30 30 H 1.09001 * 109.47305 * 184.93741 * 3 2 1 31 31 H 1.09006 * 109.47156 * 304.93352 * 3 2 1 32 32 H 0.96694 * 114.00086 * 60.00109 * 6 4 2 33 33 H 0.97000 * 119.99576 * 4.08795 * 9 7 4 34 34 H 1.08005 * 120.03175 * 359.97438 * 11 10 9 35 35 H 1.07999 * 119.96320 * 180.25290 * 12 11 10 36 36 H 1.09007 * 109.46987 * 209.99841 * 14 13 12 37 37 H 1.08991 * 109.47069 * 330.00511 * 14 13 12 38 38 H 0.96999 * 120.00291 * 180.02562 * 18 17 15 39 39 H 1.08002 * 119.96174 * 180.02562 * 23 13 12 40 40 H 1.08009 * 120.03168 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 1 3.1299 -0.7139 1.2537 6 8 1.5545 -0.0538 2.4160 7 6 1.5471 -2.1453 1.2436 8 8 0.7241 -2.5055 2.0585 9 7 2.0208 -3.0187 0.3330 10 6 1.5017 -4.3166 0.2723 11 6 1.1136 -4.9660 1.4369 12 6 0.5963 -6.2450 1.3730 13 6 0.4698 -6.8811 0.1517 14 6 -0.0946 -8.2768 0.0858 15 6 -1.5908 -8.2064 -0.0798 16 1 -2.0837 -7.2468 -0.1316 17 6 -2.3304 -9.3668 -0.1651 18 7 -3.6362 -9.3054 -0.3090 19 14 -1.4778 -11.0264 -0.0747 20 1 -1.4065 -11.4700 1.3407 21 1 -2.2451 -12.0209 -0.8670 22 1 -0.1040 -10.9080 -0.6261 23 6 0.8598 -6.2389 -1.0093 24 6 1.3766 -4.9594 -0.9523 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8898 29 1 1.7506 1.9302 0.9309 30 1 3.1264 1.4438 -0.0884 31 1 1.6062 1.9812 -0.8425 32 1 0.5901 -0.0223 2.4785 33 1 2.7217 -2.7474 -0.2803 34 1 1.2125 -4.4699 2.3911 35 1 0.2905 -6.7490 2.2779 36 1 0.3404 -8.8049 -0.7629 37 1 0.1444 -8.8092 1.0063 38 1 -4.1565 -10.1218 -0.3687 39 1 0.7593 -6.7382 -1.9617 40 1 1.6806 -4.4583 -1.8595 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928400424.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:04 Heat of formation + Delta-G solvation = -76.781706 kcal Electronic energy + Delta-G solvation = -21079.334422 eV Core-core repulsion = 17858.386576 eV Total energy + Delta-G solvation = -3220.947846 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.78465 -38.78192 -37.25271 -35.11167 -34.08918 -32.94643 -30.93967 -30.38878 -28.27371 -27.57356 -26.44373 -23.11412 -22.42094 -21.43623 -20.48895 -19.98734 -18.28072 -17.23371 -16.76618 -16.68793 -15.99742 -15.26562 -14.95337 -14.68851 -14.29880 -14.10127 -13.53598 -13.38457 -13.21217 -12.93706 -12.67509 -12.46463 -12.44804 -12.38276 -11.91507 -11.67222 -11.60730 -11.46183 -11.31102 -10.86968 -10.80413 -10.41345 -10.30129 -10.06571 -9.69321 -9.50001 -9.28925 -8.57991 -8.37252 -7.47477 -6.06668 -4.05910 1.74862 1.97501 2.53565 2.97991 3.29020 3.36583 3.39006 3.95572 4.28025 4.34671 4.41746 4.42805 4.48082 4.76066 5.07848 5.12426 5.24425 5.30867 5.35636 5.48462 5.50289 5.52955 5.65522 5.83313 5.90110 5.91515 5.93377 6.01455 6.09178 6.53920 6.67540 6.78076 6.93657 7.02042 7.04855 7.17298 7.41884 7.55956 7.59149 7.71223 8.05938 8.50450 8.99158 9.53342 11.06357 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034951 B = 0.003374 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.940059 B = 8295.867406 C = 8380.195350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.159 4.159 2 C -0.122 4.122 3 C -0.143 4.143 4 C 0.099 3.901 5 H 0.123 0.877 6 O -0.536 6.536 7 C 0.481 3.519 8 O -0.512 6.512 9 N -0.665 5.665 10 C 0.104 3.896 11 C -0.116 4.116 12 C -0.107 4.107 13 C -0.036 4.036 14 C 0.014 3.986 15 C -0.513 4.513 16 H 0.074 0.926 17 C 0.069 3.931 18 N -0.900 5.900 19 Si 0.878 3.122 20 H -0.276 1.276 21 H -0.287 1.287 22 H -0.265 1.265 23 C -0.106 4.106 24 C -0.141 4.141 25 H 0.060 0.940 26 H 0.065 0.935 27 H 0.061 0.939 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.056 0.944 31 H 0.058 0.942 32 H 0.384 0.616 33 H 0.405 0.595 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.028 0.972 37 H 0.024 0.976 38 H 0.264 0.736 39 H 0.123 0.877 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.502 18.618 -1.185 23.629 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.142 4.142 3 C -0.200 4.200 4 C 0.036 3.964 5 H 0.140 0.860 6 O -0.342 6.342 7 C 0.268 3.732 8 O -0.387 6.387 9 N -0.311 5.311 10 C 0.011 3.989 11 C -0.136 4.136 12 C -0.126 4.126 13 C -0.037 4.037 14 C -0.023 4.023 15 C -0.551 4.551 16 H 0.092 0.908 17 C -0.133 4.133 18 N -0.539 5.539 19 Si 0.705 3.295 20 H -0.202 1.202 21 H -0.213 1.213 22 H -0.189 1.189 23 C -0.125 4.125 24 C -0.161 4.161 25 H 0.079 0.921 26 H 0.084 0.916 27 H 0.080 0.920 28 H 0.102 0.898 29 H 0.084 0.916 30 H 0.075 0.925 31 H 0.077 0.923 32 H 0.234 0.766 33 H 0.240 0.760 34 H 0.146 0.854 35 H 0.140 0.860 36 H 0.046 0.954 37 H 0.042 0.958 38 H 0.074 0.926 39 H 0.141 0.859 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges 14.355 18.396 -0.468 23.339 hybrid contribution -0.062 -0.909 -0.504 1.041 sum 14.293 17.488 -0.972 22.606 Atomic orbital electron populations 1.21917 0.94191 1.02874 1.02628 1.21760 0.97341 0.97835 0.97224 1.21770 1.00940 0.94673 1.02649 1.21895 1.00233 0.87250 0.87070 0.85952 1.86558 1.28138 1.77137 1.42332 1.21709 0.82069 0.88410 0.81060 1.90755 1.32231 1.78628 1.37058 1.43404 1.39880 1.11033 1.36814 1.17558 1.02912 0.84195 0.94200 1.21117 1.00619 0.94479 0.97393 1.21000 0.99148 0.94174 0.98228 1.20320 0.93135 0.98066 0.92179 1.18809 0.97150 0.88987 0.97328 1.20945 0.88838 0.94887 1.50432 0.90830 1.25007 0.94700 0.99066 0.94523 1.69902 1.05356 1.28429 1.50164 0.86797 0.80140 0.84001 0.78518 1.20153 1.21277 1.18916 1.20859 0.98933 0.94070 0.98636 1.20742 1.03850 0.96438 0.95101 0.92116 0.91592 0.91996 0.89777 0.91583 0.92458 0.92257 0.76602 0.76007 0.85357 0.85980 0.95386 0.95814 0.92604 0.85892 0.86653 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 8.64 37.16 0.32 -1.02 16 2 C -0.12 -0.86 2.80 -90.62 -0.25 -1.12 16 3 C -0.14 -0.85 9.12 37.15 0.34 -0.51 16 4 C 0.10 0.87 3.18 -27.88 -0.09 0.78 16 5 H 0.12 0.83 8.14 -51.93 -0.42 0.41 16 6 O -0.54 -5.55 12.24 -54.99 -0.67 -6.22 16 7 C 0.48 6.03 5.74 -10.98 -0.06 5.97 16 8 O -0.51 -8.66 13.77 -14.20 -0.20 -8.86 16 9 N -0.67 -7.76 5.34 -9.86 -0.05 -7.82 16 10 C 0.10 1.64 6.29 -83.70 -0.53 1.11 16 11 C -0.12 -2.12 8.69 -39.40 -0.34 -2.46 16 12 C -0.11 -2.14 9.69 -39.61 -0.38 -2.52 16 13 C -0.04 -0.77 5.07 -104.59 -0.53 -1.30 16 14 C 0.01 0.34 4.17 -29.04 -0.12 0.22 16 15 C -0.51 -14.71 9.65 -34.44 -0.33 -15.04 16 16 H 0.07 2.33 7.98 -52.48 -0.42 1.91 16 17 C 0.07 1.99 5.47 -17.82 -0.10 1.90 16 18 N -0.90 -27.81 13.96 55.43 0.77 -27.03 16 19 Si 0.88 21.43 27.47 -169.99 -4.67 16.76 16 20 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 21 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 22 H -0.26 -6.14 6.54 56.52 0.37 -5.77 16 23 C -0.11 -1.97 9.69 -39.61 -0.38 -2.36 16 24 C -0.14 -2.20 9.97 -39.39 -0.39 -2.59 16 25 H 0.06 0.47 6.77 -51.93 -0.35 0.12 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.06 0.68 7.23 -51.93 -0.38 0.31 16 28 H 0.08 0.50 8.14 -51.94 -0.42 0.08 16 29 H 0.07 0.44 7.55 -51.93 -0.39 0.05 16 30 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 32 H 0.38 3.53 7.02 45.56 0.32 3.85 16 33 H 0.41 3.11 8.82 -40.82 -0.36 2.75 16 34 H 0.13 2.35 6.25 -52.48 -0.33 2.02 16 35 H 0.12 2.37 8.06 -52.49 -0.42 1.95 16 36 H 0.03 0.66 7.14 -51.92 -0.37 0.29 16 37 H 0.02 0.56 7.51 -51.93 -0.39 0.17 16 38 H 0.26 7.61 8.31 -40.82 -0.34 7.27 16 39 H 0.12 2.16 8.06 -52.49 -0.42 1.73 16 40 H 0.12 1.40 8.06 -52.48 -0.42 0.98 16 LS Contribution 331.16 15.07 4.99 4.99 Total: -1.00 -34.02 331.16 -7.90 -41.91 By element: Atomic # 1 Polarization: 10.42 SS G_CDS: -5.22 Total: 5.20 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -2.86 Total: -18.94 kcal Atomic # 7 Polarization: -35.57 SS G_CDS: 0.72 Total: -34.85 kcal Atomic # 8 Polarization: -14.21 SS G_CDS: -0.87 Total: -15.08 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -4.67 Total: 16.76 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.02 -7.90 -41.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928400424.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.868 kcal (2) G-P(sol) polarization free energy of solvation -34.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.914 kcal (6) G-S(sol) free energy of system = (1) + (5) -76.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds