Wall clock time and date at job start Mon Mar 30 2020 01:53:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47024 * 2 1 4 4 C 1.53002 * 109.46587 * 119.99288 * 2 1 3 5 5 H 1.09004 * 109.46974 * 180.47004 * 4 2 1 6 6 O 1.42897 * 109.47449 * 300.47197 * 4 2 1 7 7 C 1.50701 * 109.47083 * 60.47507 * 4 2 1 8 8 O 1.21286 * 119.99687 * 248.75798 * 7 4 2 9 9 N 1.34777 * 120.00177 * 68.75444 * 7 4 2 10 10 C 1.39926 * 119.99831 * 184.08156 * 9 7 4 11 11 C 1.38867 * 120.07434 * 324.79212 * 10 9 7 12 12 C 1.38108 * 119.93006 * 179.72553 * 11 10 9 13 13 C 1.38278 * 120.07341 * 0.27108 * 12 11 10 14 14 C 1.50699 * 119.93149 * 179.97438 * 13 12 11 15 15 C 1.50700 * 109.46931 * 90.00461 * 14 13 12 16 16 H 1.08003 * 119.99901 * 359.97438 * 15 14 13 17 17 C 1.37875 * 120.00127 * 179.97438 * 15 14 13 18 18 N 1.31514 * 120.00303 * 179.97438 * 17 15 14 19 19 Si 1.86798 * 119.99793 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47461 * 89.99757 * 19 17 15 21 21 H 1.48503 * 109.47055 * 209.99851 * 19 17 15 22 22 H 1.48506 * 109.47349 * 329.99485 * 19 17 15 23 23 C 1.38289 * 120.13788 * 359.96009 * 13 12 11 24 24 C 1.38109 * 120.06849 * 359.97438 * 23 13 12 25 25 H 1.09002 * 109.47612 * 300.00742 * 1 2 3 26 26 H 1.09004 * 109.46715 * 60.00951 * 1 2 3 27 27 H 1.09004 * 109.46979 * 180.02562 * 1 2 3 28 28 H 1.08989 * 109.47390 * 239.99463 * 2 1 3 29 29 H 1.09003 * 109.47427 * 64.93607 * 3 2 1 30 30 H 1.09001 * 109.47305 * 184.93741 * 3 2 1 31 31 H 1.09006 * 109.47156 * 304.93352 * 3 2 1 32 32 H 0.96694 * 114.00086 * 60.00109 * 6 4 2 33 33 H 0.97000 * 119.99576 * 4.08795 * 9 7 4 34 34 H 1.08005 * 120.03175 * 359.97438 * 11 10 9 35 35 H 1.07999 * 119.96320 * 180.25290 * 12 11 10 36 36 H 1.09007 * 109.46987 * 209.99841 * 14 13 12 37 37 H 1.08991 * 109.47069 * 330.00511 * 14 13 12 38 38 H 0.96999 * 120.00291 * 180.02562 * 18 17 15 39 39 H 1.08002 * 119.96174 * 180.02562 * 23 13 12 40 40 H 1.08009 * 120.03168 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0399 -0.7211 1.2494 5 1 3.1299 -0.7139 1.2537 6 8 1.5545 -0.0538 2.4160 7 6 1.5471 -2.1453 1.2436 8 8 0.7241 -2.5055 2.0585 9 7 2.0208 -3.0187 0.3330 10 6 1.5017 -4.3166 0.2723 11 6 1.1136 -4.9660 1.4369 12 6 0.5963 -6.2450 1.3730 13 6 0.4698 -6.8811 0.1517 14 6 -0.0946 -8.2768 0.0858 15 6 -1.5908 -8.2064 -0.0798 16 1 -2.0837 -7.2468 -0.1316 17 6 -2.3304 -9.3668 -0.1651 18 7 -3.6362 -9.3054 -0.3090 19 14 -1.4778 -11.0264 -0.0747 20 1 -1.4065 -11.4700 1.3407 21 1 -2.2451 -12.0209 -0.8670 22 1 -0.1040 -10.9080 -0.6261 23 6 0.8598 -6.2389 -1.0093 24 6 1.3766 -4.9594 -0.9523 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3633 -1.0277 0.0005 28 1 1.8933 -0.5139 -0.8898 29 1 1.7506 1.9302 0.9309 30 1 3.1264 1.4438 -0.0884 31 1 1.6062 1.9812 -0.8425 32 1 0.5901 -0.0223 2.4785 33 1 2.7217 -2.7474 -0.2803 34 1 1.2125 -4.4699 2.3911 35 1 0.2905 -6.7490 2.2779 36 1 0.3404 -8.8049 -0.7629 37 1 0.1444 -8.8092 1.0063 38 1 -4.1565 -10.1218 -0.3687 39 1 0.7593 -6.7382 -1.9617 40 1 1.6806 -4.4583 -1.8595 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928400424.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:04 Heat of formation + Delta-G solvation = -100.263717 kcal Electronic energy + Delta-G solvation = -21080.352679 eV Core-core repulsion = 17858.386576 eV Total energy + Delta-G solvation = -3221.966103 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.83376 -40.01130 -38.22498 -36.37215 -35.09263 -34.66009 -32.65089 -31.80710 -29.55862 -28.14782 -27.75369 -24.76997 -23.86325 -22.53653 -21.71176 -21.00245 -19.29432 -18.97956 -18.33519 -17.45765 -17.02275 -16.55615 -16.28355 -15.96457 -15.71128 -15.33660 -14.90286 -14.43293 -14.42011 -14.24767 -14.03889 -13.81191 -13.49507 -13.36804 -13.26997 -13.03091 -12.66870 -12.54165 -12.21895 -12.10759 -11.94728 -11.84802 -11.80493 -11.59361 -11.46576 -11.04666 -10.79894 -10.53425 -9.79116 -8.88944 -8.30615 -6.36316 0.38703 0.53969 1.36705 1.38118 1.48155 1.50476 1.98034 2.35032 2.93644 3.03584 3.23269 3.59293 3.66929 3.85624 4.03081 4.12716 4.15233 4.29676 4.49641 4.55380 4.57751 4.62164 4.69597 4.77751 4.88183 5.01565 5.03906 5.05626 5.14783 5.24888 5.29086 5.38032 5.40459 5.45974 5.54769 5.60015 5.98314 6.13233 6.27060 6.32423 6.53909 6.70208 7.09162 7.27204 8.86199 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.034951 B = 0.003374 C = 0.003340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 800.940059 B = 8295.867406 C = 8380.195350 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C -0.115 4.115 3 C -0.139 4.139 4 C 0.106 3.894 5 H 0.153 0.847 6 O -0.548 6.548 7 C 0.479 3.521 8 O -0.561 6.561 9 N -0.650 5.650 10 C 0.117 3.883 11 C -0.129 4.129 12 C -0.123 4.123 13 C -0.072 4.072 14 C 0.021 3.979 15 C -0.522 4.522 16 H 0.023 0.977 17 C 0.005 3.995 18 N -0.951 5.951 19 Si 0.954 3.046 20 H -0.268 1.268 21 H -0.282 1.282 22 H -0.241 1.241 23 C -0.113 4.113 24 C -0.127 4.127 25 H 0.060 0.940 26 H 0.076 0.924 27 H 0.030 0.970 28 H 0.104 0.896 29 H 0.056 0.944 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.386 0.614 33 H 0.429 0.571 34 H 0.123 0.877 35 H 0.112 0.888 36 H 0.038 0.962 37 H 0.027 0.973 38 H 0.268 0.732 39 H 0.132 0.868 40 H 0.162 0.838 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.524 19.753 -2.617 26.535 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C -0.134 4.134 3 C -0.196 4.196 4 C 0.044 3.956 5 H 0.171 0.829 6 O -0.354 6.354 7 C 0.268 3.732 8 O -0.439 6.439 9 N -0.298 5.298 10 C 0.023 3.977 11 C -0.149 4.149 12 C -0.141 4.141 13 C -0.073 4.073 14 C -0.016 4.016 15 C -0.560 4.560 16 H 0.042 0.958 17 C -0.191 4.191 18 N -0.591 5.591 19 Si 0.777 3.223 20 H -0.193 1.193 21 H -0.207 1.207 22 H -0.164 1.164 23 C -0.132 4.132 24 C -0.147 4.147 25 H 0.079 0.921 26 H 0.095 0.905 27 H 0.049 0.951 28 H 0.122 0.878 29 H 0.075 0.925 30 H 0.090 0.910 31 H 0.086 0.914 32 H 0.236 0.764 33 H 0.269 0.731 34 H 0.141 0.859 35 H 0.130 0.870 36 H 0.056 0.944 37 H 0.045 0.955 38 H 0.077 0.923 39 H 0.150 0.850 40 H 0.179 0.821 Dipole moment (debyes) X Y Z Total from point charges 17.427 19.573 -1.924 26.278 hybrid contribution -1.040 -1.066 -0.046 1.490 sum 16.387 18.508 -1.970 24.799 Atomic orbital electron populations 1.21932 0.95604 1.00964 1.03281 1.21765 0.96031 0.98733 0.96836 1.21743 1.01910 0.93452 1.02539 1.22124 1.01632 0.84364 0.87510 0.82949 1.86542 1.28497 1.77009 1.43355 1.22560 0.80996 0.89814 0.79872 1.90745 1.34448 1.79657 1.39025 1.43324 1.40097 1.09198 1.37164 1.17656 1.01028 0.85515 0.93472 1.21128 1.01360 0.93971 0.98403 1.20986 1.00181 0.95199 0.97762 1.20193 0.95938 0.97434 0.93727 1.18650 0.93937 0.91411 0.97578 1.21183 0.91650 0.92971 1.50148 0.95837 1.26037 0.95323 1.03870 0.93912 1.70069 1.07389 1.29900 1.51780 0.85602 0.79850 0.77858 0.79021 1.19286 1.20717 1.16423 1.21058 0.98823 0.95345 0.97968 1.21081 1.01897 0.95145 0.96564 0.92061 0.90507 0.95054 0.87801 0.92517 0.90958 0.91444 0.76353 0.73134 0.85929 0.86977 0.94401 0.95523 0.92336 0.85016 0.82085 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.46 8.64 71.98 0.62 -1.84 16 2 C -0.11 -1.25 2.80 -10.79 -0.03 -1.28 16 3 C -0.14 -1.18 9.12 71.98 0.66 -0.52 16 4 C 0.11 1.59 3.18 29.85 0.09 1.68 16 5 H 0.15 1.40 8.14 -2.38 -0.02 1.38 16 6 O -0.55 -10.50 12.24 -130.09 -1.59 -12.10 16 7 C 0.48 11.20 5.74 87.66 0.50 11.70 16 8 O -0.56 -19.05 13.77 15.84 0.22 -18.83 16 9 N -0.65 -13.31 5.34 -303.51 -1.62 -14.93 16 10 C 0.12 3.49 6.29 38.15 0.24 3.73 16 11 C -0.13 -4.72 8.69 22.39 0.19 -4.53 16 12 C -0.12 -5.07 9.69 22.25 0.22 -4.86 16 13 C -0.07 -3.11 5.07 -19.84 -0.10 -3.21 16 14 C 0.02 1.04 4.17 29.10 0.12 1.16 16 15 C -0.52 -31.08 9.65 25.60 0.25 -30.84 16 16 H 0.02 1.58 7.98 -2.91 -0.02 1.55 16 17 C 0.01 0.32 5.47 84.65 0.46 0.78 16 18 N -0.95 -60.83 13.96 21.45 0.30 -60.53 16 19 Si 0.95 44.41 27.47 68.60 1.88 46.29 16 20 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 21 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 22 H -0.24 -10.22 6.54 99.48 0.65 -9.57 16 23 C -0.11 -4.09 9.69 22.25 0.22 -3.87 16 24 C -0.13 -3.61 9.97 22.39 0.22 -3.38 16 25 H 0.06 0.91 6.77 -2.39 -0.02 0.89 16 26 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 27 H 0.03 0.67 7.23 -2.38 -0.02 0.65 16 28 H 0.10 0.77 8.14 -2.39 -0.02 0.75 16 29 H 0.06 0.61 7.55 -2.39 -0.02 0.59 16 30 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 31 H 0.07 0.49 8.14 -2.38 -0.02 0.47 16 32 H 0.39 6.95 7.02 -74.06 -0.52 6.43 16 33 H 0.43 4.66 8.82 -92.71 -0.82 3.84 16 34 H 0.12 4.62 6.25 -2.91 -0.02 4.61 16 35 H 0.11 4.66 8.06 -2.91 -0.02 4.64 16 36 H 0.04 1.74 7.14 -2.38 -0.02 1.72 16 37 H 0.03 1.25 7.51 -2.39 -0.02 1.24 16 38 H 0.27 15.87 8.31 -92.71 -0.77 15.10 16 39 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 40 H 0.16 3.09 8.06 -2.91 -0.02 3.07 16 Total: -1.00 -78.17 331.16 2.52 -75.66 By element: Atomic # 1 Polarization: 20.06 SS G_CDS: -0.34 Total: 19.73 kcal Atomic # 6 Polarization: -38.95 SS G_CDS: 3.67 Total: -35.28 kcal Atomic # 7 Polarization: -74.14 SS G_CDS: -1.32 Total: -75.46 kcal Atomic # 8 Polarization: -29.56 SS G_CDS: -1.37 Total: -30.93 kcal Atomic # 14 Polarization: 44.41 SS G_CDS: 1.88 Total: 46.29 kcal Total: -78.17 2.52 -75.66 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928400424.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -24.606 kcal (2) G-P(sol) polarization free energy of solvation -78.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.780 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.516 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.657 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds