Wall clock time and date at job start Mon Mar 30 2020 01:53:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47177 * 2 1 4 4 C 1.52999 * 109.47300 * 119.99646 * 2 1 3 5 5 H 1.09004 * 109.46515 * 60.00266 * 4 2 1 6 6 O 1.42901 * 109.47261 * 300.00349 * 4 2 1 7 7 C 1.50699 * 109.47180 * 179.97438 * 4 2 1 8 8 O 1.21285 * 119.99535 * 115.00699 * 7 4 2 9 9 N 1.34771 * 120.00496 * 295.00400 * 7 4 2 10 10 C 1.39920 * 120.00453 * 175.37081 * 9 7 4 11 11 C 1.38876 * 120.07041 * 214.81494 * 10 9 7 12 12 C 1.38111 * 119.92540 * 179.67821 * 11 10 9 13 13 C 1.38279 * 120.07411 * 0.60904 * 12 11 10 14 14 C 1.50697 * 119.93531 * 179.70223 * 13 12 11 15 15 C 1.50702 * 109.47225 * 269.98621 * 14 13 12 16 16 H 1.07995 * 119.99917 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99677 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00501 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47321 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46993 * 119.99882 * 19 17 15 22 22 H 1.48502 * 109.47577 * 240.00376 * 19 17 15 23 23 C 1.38289 * 120.14107 * 359.68827 * 13 12 11 24 24 C 1.38118 * 120.06693 * 359.97438 * 23 13 12 25 25 H 1.09000 * 109.46961 * 300.00074 * 1 2 3 26 26 H 1.09000 * 109.47100 * 60.00177 * 1 2 3 27 27 H 1.08992 * 109.47104 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46961 * 239.99926 * 2 1 3 29 29 H 1.09000 * 109.46961 * 299.99908 * 3 2 1 30 30 H 1.09000 * 109.47236 * 60.00094 * 3 2 1 31 31 H 1.08993 * 109.47369 * 180.02562 * 3 2 1 32 32 H 0.96697 * 113.99788 * 299.99380 * 6 4 2 33 33 H 0.97010 * 120.00029 * 355.09552 * 9 7 4 34 34 H 1.07996 * 120.03808 * 359.97386 * 11 10 9 35 35 H 1.08005 * 119.96831 * 180.29778 * 12 11 10 36 36 H 1.09005 * 109.46759 * 29.97935 * 14 13 12 37 37 H 1.08996 * 109.47421 * 149.98319 * 14 13 12 38 38 H 0.97001 * 120.00662 * 179.97438 * 18 17 15 39 39 H 1.07994 * 119.96552 * 180.02562 * 23 13 12 40 40 H 1.07995 * 120.03166 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2492 6 8 1.5637 -0.0475 2.4160 7 6 3.5470 -0.7217 1.2489 8 8 4.1538 -0.1193 2.1092 9 7 4.2205 -1.3915 0.2928 10 6 5.6163 -1.3130 0.2348 11 6 6.2636 -1.3279 -0.9938 12 6 7.6411 -1.2436 -1.0479 13 6 8.3764 -1.1571 0.1200 14 6 9.8797 -1.0720 0.0576 15 6 10.4633 -2.4611 0.0902 16 1 9.8109 -3.3196 0.1505 17 6 11.8302 -2.6358 0.0429 18 7 12.6247 -1.5903 -0.0300 19 14 12.5536 -4.3575 0.0840 20 1 11.4557 -5.3540 0.1675 21 1 13.3420 -4.5928 -1.1522 22 1 13.4382 -4.4947 1.2689 23 6 7.7353 -1.1482 1.3452 24 6 6.3576 -1.2253 1.4059 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.8490 0.8740 2.4821 33 1 3.7379 -1.9313 -0.3528 34 1 5.6902 -1.4005 -1.9061 35 1 8.1449 -1.2502 -2.0032 36 1 10.1774 -0.5745 -0.8655 37 1 10.2472 -0.5034 0.9117 38 1 13.5863 -1.7132 -0.0629 39 1 8.3123 -1.0802 2.2555 40 1 5.8574 -1.2179 2.3630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928400426.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:07 Heat of formation + Delta-G solvation = -80.972815 kcal Electronic energy + Delta-G solvation = -21001.919769 eV Core-core repulsion = 17780.790183 eV Total energy + Delta-G solvation = -3221.129586 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.43 seconds Orbital eigenvalues (eV) -40.77529 -38.72450 -37.23640 -35.09158 -34.08766 -33.00966 -30.65327 -30.31944 -28.06498 -27.61414 -26.17676 -23.31135 -22.40796 -21.50652 -20.56904 -19.98007 -18.25731 -17.19366 -16.72105 -16.32371 -15.98927 -15.25282 -14.97133 -14.67824 -14.26499 -14.19753 -13.47421 -13.40094 -13.07810 -12.87517 -12.67800 -12.59869 -12.48981 -12.06323 -11.89611 -11.55020 -11.41296 -11.35401 -11.30025 -10.89530 -10.76826 -10.57981 -10.37833 -9.98392 -9.72568 -9.36514 -9.26474 -8.43277 -8.31121 -7.43279 -6.04254 -4.08335 1.80263 2.03871 2.56163 2.99708 3.29077 3.36736 3.41670 3.93378 4.26224 4.33157 4.39187 4.46407 4.56136 4.73978 5.07920 5.10251 5.26932 5.29794 5.40191 5.45346 5.48676 5.56214 5.62439 5.84926 5.88454 5.91324 6.02585 6.09532 6.17781 6.62838 6.73295 6.87333 7.14400 7.15834 7.19754 7.45022 7.50747 7.68517 7.85350 7.91572 8.07441 8.31864 8.97282 9.55533 11.05405 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041768 B = 0.003161 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.210256 B = 8855.876075 C = 8925.504133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.123 4.123 3 C -0.158 4.158 4 C 0.098 3.902 5 H 0.124 0.876 6 O -0.535 6.535 7 C 0.481 3.519 8 O -0.515 6.515 9 N -0.664 5.664 10 C 0.099 3.901 11 C -0.141 4.141 12 C -0.110 4.110 13 C -0.040 4.040 14 C 0.047 3.953 15 C -0.511 4.511 16 H 0.058 0.942 17 C 0.057 3.943 18 N -0.894 5.894 19 Si 0.895 3.105 20 H -0.272 1.272 21 H -0.283 1.283 22 H -0.283 1.283 23 C -0.110 4.110 24 C -0.117 4.117 25 H 0.064 0.936 26 H 0.058 0.942 27 H 0.057 0.943 28 H 0.084 0.916 29 H 0.065 0.935 30 H 0.060 0.940 31 H 0.060 0.940 32 H 0.382 0.618 33 H 0.405 0.595 34 H 0.114 0.886 35 H 0.122 0.878 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.261 0.739 39 H 0.121 0.879 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.528 2.724 -2.165 23.784 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.142 4.142 3 C -0.215 4.215 4 C 0.035 3.965 5 H 0.141 0.859 6 O -0.340 6.340 7 C 0.268 3.732 8 O -0.390 6.390 9 N -0.310 5.310 10 C 0.007 3.993 11 C -0.162 4.162 12 C -0.128 4.128 13 C -0.040 4.040 14 C 0.010 3.990 15 C -0.549 4.549 16 H 0.076 0.924 17 C -0.144 4.144 18 N -0.533 5.533 19 Si 0.723 3.277 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 C -0.128 4.128 24 C -0.136 4.136 25 H 0.083 0.917 26 H 0.077 0.923 27 H 0.076 0.924 28 H 0.103 0.897 29 H 0.084 0.916 30 H 0.078 0.922 31 H 0.079 0.921 32 H 0.232 0.768 33 H 0.240 0.760 34 H 0.132 0.868 35 H 0.140 0.860 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -23.249 2.673 -1.409 23.444 hybrid contribution 0.615 -0.748 -0.531 1.104 sum -22.634 1.925 -1.940 22.799 Atomic orbital electron populations 1.21756 0.93479 1.02280 1.02436 1.21773 0.97621 0.97511 0.97304 1.21908 1.01698 0.95316 1.02597 1.21912 0.88850 0.98795 0.86959 0.85871 1.86571 1.74732 1.30265 1.42468 1.21682 0.91163 0.78861 0.81539 1.90737 1.69509 1.42929 1.35785 1.43401 1.05816 1.48907 1.32874 1.17543 0.81298 1.06234 0.94273 1.20746 0.95127 1.05196 0.95089 1.20889 0.92305 1.00792 0.98839 1.20732 0.98919 0.92508 0.91882 1.18365 0.84478 0.97755 0.98390 1.21102 0.91344 0.91772 1.50666 0.92406 1.25020 0.97174 0.96985 0.95213 1.69964 1.03758 1.29146 1.50442 0.86484 0.79132 0.84494 0.77625 1.19673 1.20957 1.20932 1.21034 0.93106 1.00447 0.98256 1.21133 0.93886 1.01312 0.97308 0.91696 0.92300 0.92388 0.89746 0.91619 0.92150 0.92094 0.76769 0.76011 0.86822 0.85988 0.95299 0.95278 0.92888 0.86074 0.85447 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.81 9.05 37.16 0.34 -0.48 16 2 C -0.12 -0.82 2.77 -90.62 -0.25 -1.07 16 3 C -0.16 -1.20 8.64 37.16 0.32 -0.88 16 4 C 0.10 0.86 3.19 -27.88 -0.09 0.77 16 5 H 0.12 0.86 8.14 -51.93 -0.42 0.44 16 6 O -0.53 -5.44 12.28 -55.08 -0.68 -6.12 16 7 C 0.48 5.98 5.75 -10.99 -0.06 5.92 16 8 O -0.51 -8.54 13.76 -14.30 -0.20 -8.74 16 9 N -0.66 -7.89 5.30 -9.86 -0.05 -7.94 16 10 C 0.10 1.59 6.30 -83.69 -0.53 1.06 16 11 C -0.14 -2.25 9.97 -39.39 -0.39 -2.65 16 12 C -0.11 -2.09 9.69 -39.61 -0.38 -2.48 16 13 C -0.04 -0.87 5.07 -104.59 -0.53 -1.40 16 14 C 0.05 1.21 5.10 -29.04 -0.15 1.07 16 15 C -0.51 -14.31 9.09 -34.44 -0.31 -14.63 16 16 H 0.06 1.61 7.74 -52.49 -0.41 1.21 16 17 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 18 N -0.89 -26.47 13.29 55.43 0.74 -25.74 16 19 Si 0.89 21.55 29.54 -169.99 -5.02 16.52 16 20 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 21 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 22 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 23 C -0.11 -2.26 9.69 -39.61 -0.38 -2.64 16 24 C -0.12 -2.17 8.70 -39.39 -0.34 -2.51 16 25 H 0.06 0.41 7.68 -51.93 -0.40 0.01 16 26 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 27 H 0.06 0.30 8.14 -51.93 -0.42 -0.13 16 28 H 0.08 0.48 8.09 -51.93 -0.42 0.06 16 29 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 30 H 0.06 0.42 6.78 -51.93 -0.35 0.07 16 31 H 0.06 0.61 7.22 -51.93 -0.37 0.23 16 32 H 0.38 3.35 7.08 45.56 0.32 3.67 16 33 H 0.40 3.29 8.78 -40.82 -0.36 2.94 16 34 H 0.11 1.42 8.06 -52.49 -0.42 1.00 16 35 H 0.12 2.23 8.06 -52.48 -0.42 1.80 16 36 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 37 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 38 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 39 H 0.12 2.45 8.06 -52.49 -0.42 2.03 16 40 H 0.13 2.39 6.22 -52.49 -0.33 2.06 16 LS Contribution 334.76 15.07 5.04 5.04 Total: -1.00 -32.87 334.76 -8.28 -41.14 By element: Atomic # 1 Polarization: 9.47 SS G_CDS: -5.25 Total: 4.22 kcal Atomic # 6 Polarization: -15.53 SS G_CDS: -2.87 Total: -18.40 kcal Atomic # 7 Polarization: -34.36 SS G_CDS: 0.68 Total: -33.68 kcal Atomic # 8 Polarization: -13.98 SS G_CDS: -0.87 Total: -14.86 kcal Atomic # 14 Polarization: 21.55 SS G_CDS: -5.02 Total: 16.52 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -32.87 -8.28 -41.14 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928400426.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.828 kcal (2) G-P(sol) polarization free energy of solvation -32.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -72.694 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.279 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.145 kcal (6) G-S(sol) free energy of system = (1) + (5) -80.973 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.43 seconds