Wall clock time and date at job start Mon Mar 30 2020 01:53:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53005 * 109.47177 * 2 1 4 4 C 1.52999 * 109.47300 * 119.99646 * 2 1 3 5 5 H 1.09004 * 109.46515 * 60.00266 * 4 2 1 6 6 O 1.42901 * 109.47261 * 300.00349 * 4 2 1 7 7 C 1.50699 * 109.47180 * 179.97438 * 4 2 1 8 8 O 1.21285 * 119.99535 * 115.00699 * 7 4 2 9 9 N 1.34771 * 120.00496 * 295.00400 * 7 4 2 10 10 C 1.39920 * 120.00453 * 175.37081 * 9 7 4 11 11 C 1.38876 * 120.07041 * 214.81494 * 10 9 7 12 12 C 1.38111 * 119.92540 * 179.67821 * 11 10 9 13 13 C 1.38279 * 120.07411 * 0.60904 * 12 11 10 14 14 C 1.50697 * 119.93531 * 179.70223 * 13 12 11 15 15 C 1.50702 * 109.47225 * 269.98621 * 14 13 12 16 16 H 1.07995 * 119.99917 * 359.97438 * 15 14 13 17 17 C 1.37881 * 119.99677 * 179.97438 * 15 14 13 18 18 N 1.31510 * 120.00501 * 0.02562 * 17 15 14 19 19 Si 1.86799 * 119.99781 * 179.97438 * 17 15 14 20 20 H 1.48507 * 109.47321 * 0.02562 * 19 17 15 21 21 H 1.48502 * 109.46993 * 119.99882 * 19 17 15 22 22 H 1.48502 * 109.47577 * 240.00376 * 19 17 15 23 23 C 1.38289 * 120.14107 * 359.68827 * 13 12 11 24 24 C 1.38118 * 120.06693 * 359.97438 * 23 13 12 25 25 H 1.09000 * 109.46961 * 300.00074 * 1 2 3 26 26 H 1.09000 * 109.47100 * 60.00177 * 1 2 3 27 27 H 1.08992 * 109.47104 * 180.02562 * 1 2 3 28 28 H 1.09000 * 109.46961 * 239.99926 * 2 1 3 29 29 H 1.09000 * 109.46961 * 299.99908 * 3 2 1 30 30 H 1.09000 * 109.47236 * 60.00094 * 3 2 1 31 31 H 1.08993 * 109.47369 * 180.02562 * 3 2 1 32 32 H 0.96697 * 113.99788 * 299.99380 * 6 4 2 33 33 H 0.97010 * 120.00029 * 355.09552 * 9 7 4 34 34 H 1.07996 * 120.03808 * 359.97386 * 11 10 9 35 35 H 1.08005 * 119.96831 * 180.29778 * 12 11 10 36 36 H 1.09005 * 109.46759 * 29.97935 * 14 13 12 37 37 H 1.08996 * 109.47421 * 149.98319 * 14 13 12 38 38 H 0.97001 * 120.00662 * 179.97438 * 18 17 15 39 39 H 1.07994 * 119.96552 * 180.02562 * 23 13 12 40 40 H 1.07995 * 120.03166 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2493 5 1 1.6767 -1.7489 1.2492 6 8 1.5637 -0.0475 2.4160 7 6 3.5470 -0.7217 1.2489 8 8 4.1538 -0.1193 2.1092 9 7 4.2205 -1.3915 0.2928 10 6 5.6163 -1.3130 0.2348 11 6 6.2636 -1.3279 -0.9938 12 6 7.6411 -1.2436 -1.0479 13 6 8.3764 -1.1571 0.1200 14 6 9.8797 -1.0720 0.0576 15 6 10.4633 -2.4611 0.0902 16 1 9.8109 -3.3196 0.1505 17 6 11.8302 -2.6358 0.0429 18 7 12.6247 -1.5903 -0.0300 19 14 12.5536 -4.3575 0.0840 20 1 11.4557 -5.3540 0.1675 21 1 13.3420 -4.5928 -1.1522 22 1 13.4382 -4.4947 1.2689 23 6 7.7353 -1.1482 1.3452 24 6 6.3576 -1.2253 1.4059 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8933 -0.5138 -0.8900 29 1 1.6767 1.9563 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1299 1.4426 -0.0005 32 1 1.8490 0.8740 2.4821 33 1 3.7379 -1.9313 -0.3528 34 1 5.6902 -1.4005 -1.9061 35 1 8.1449 -1.2502 -2.0032 36 1 10.1774 -0.5745 -0.8655 37 1 10.2472 -0.5034 0.9117 38 1 13.5863 -1.7132 -0.0629 39 1 8.3123 -1.0802 2.2555 40 1 5.8574 -1.2179 2.3630 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928400426.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:53:06 Heat of formation + Delta-G solvation = -102.499251 kcal Electronic energy + Delta-G solvation = -21002.853226 eV Core-core repulsion = 17780.790183 eV Total energy + Delta-G solvation = -3222.063043 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.82253 -39.98420 -38.20767 -36.36164 -35.13867 -34.63865 -32.32042 -31.79310 -29.29690 -28.12891 -27.63521 -25.08545 -23.85904 -22.60517 -21.76433 -20.97176 -19.27543 -18.52242 -18.29881 -17.46202 -17.03073 -16.65005 -16.24374 -15.94679 -15.69801 -15.29607 -14.67404 -14.55278 -14.40833 -14.19312 -13.94552 -13.66410 -13.32870 -13.29471 -13.16997 -13.01559 -12.67387 -12.63985 -12.46216 -12.17709 -11.99952 -11.83540 -11.67672 -11.54355 -11.41789 -11.01467 -10.62079 -10.50518 -9.78184 -8.91667 -8.19456 -6.34181 0.40907 0.55060 1.39160 1.39825 1.49683 1.53775 1.98986 2.39454 2.96867 3.10006 3.23811 3.60692 3.68156 3.87464 4.04865 4.13856 4.17511 4.36853 4.51542 4.57337 4.59756 4.64395 4.71891 4.79802 4.90549 5.02489 5.10754 5.16471 5.29584 5.31431 5.32711 5.40724 5.46358 5.46784 5.58739 5.74591 6.06302 6.10668 6.22988 6.33676 6.56303 6.78808 7.09746 7.34494 8.88959 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.041768 B = 0.003161 C = 0.003136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 670.210256 B = 8855.876075 C = 8925.504133 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.115 4.115 3 C -0.159 4.159 4 C 0.105 3.895 5 H 0.150 0.850 6 O -0.547 6.547 7 C 0.480 3.520 8 O -0.560 6.560 9 N -0.649 5.649 10 C 0.116 3.884 11 C -0.124 4.124 12 C -0.114 4.114 13 C -0.073 4.073 14 C 0.056 3.944 15 C -0.527 4.527 16 H 0.055 0.945 17 C 0.003 3.997 18 N -0.931 5.931 19 Si 0.967 3.033 20 H -0.264 1.264 21 H -0.274 1.274 22 H -0.278 1.278 23 C -0.124 4.124 24 C -0.126 4.126 25 H 0.055 0.945 26 H 0.068 0.932 27 H 0.068 0.932 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.060 0.940 31 H 0.034 0.966 32 H 0.386 0.614 33 H 0.428 0.572 34 H 0.162 0.838 35 H 0.127 0.873 36 H 0.008 0.992 37 H -0.002 1.002 38 H 0.266 0.734 39 H 0.107 0.893 40 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.449 1.122 -3.717 26.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.134 4.134 3 C -0.217 4.217 4 C 0.043 3.957 5 H 0.167 0.833 6 O -0.354 6.354 7 C 0.269 3.731 8 O -0.438 6.438 9 N -0.298 5.298 10 C 0.022 3.978 11 C -0.143 4.143 12 C -0.133 4.133 13 C -0.073 4.073 14 C 0.020 3.980 15 C -0.565 4.565 16 H 0.074 0.926 17 C -0.195 4.195 18 N -0.571 5.571 19 Si 0.792 3.208 20 H -0.188 1.188 21 H -0.199 1.199 22 H -0.204 1.204 23 C -0.142 4.142 24 C -0.146 4.146 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.087 0.913 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.079 0.921 31 H 0.053 0.947 32 H 0.237 0.763 33 H 0.268 0.732 34 H 0.180 0.820 35 H 0.145 0.855 36 H 0.026 0.974 37 H 0.016 0.984 38 H 0.074 0.926 39 H 0.125 0.875 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -26.217 1.057 -2.985 26.407 hybrid contribution 1.400 -0.171 -0.028 1.410 sum -24.817 0.886 -3.013 25.015 Atomic orbital electron populations 1.21734 0.92336 1.03044 1.02519 1.21776 0.98354 0.96549 0.96725 1.21921 0.99927 0.96489 1.03314 1.22123 0.85621 1.00391 0.87584 0.83302 1.86555 1.74599 1.30755 1.43460 1.22523 0.92757 0.77488 0.80357 1.90731 1.70738 1.44717 1.37569 1.43331 1.03953 1.49037 1.33456 1.17618 0.83338 1.03375 0.93432 1.21063 0.93843 1.02697 0.96741 1.21002 0.93872 1.00597 0.97837 1.20409 0.96712 0.96478 0.93737 1.18099 0.87768 0.96381 0.95798 1.21413 0.91880 0.92583 1.50605 0.92632 1.25957 0.97590 1.01396 0.94597 1.70089 1.04198 1.31584 1.51260 0.85363 0.78344 0.79184 0.77953 1.18830 1.19927 1.20392 1.20935 0.94211 1.01679 0.97408 1.21122 0.93016 1.01993 0.98438 0.92591 0.91297 0.91299 0.87767 0.90419 0.92085 0.94692 0.76341 0.73226 0.82014 0.85476 0.97416 0.98403 0.92559 0.87471 0.85833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.08 9.05 71.98 0.65 -0.43 16 2 C -0.12 -1.13 2.77 -10.79 -0.03 -1.16 16 3 C -0.16 -2.07 8.64 71.98 0.62 -1.45 16 4 C 0.11 1.52 3.19 29.85 0.10 1.62 16 5 H 0.15 1.43 8.14 -2.38 -0.02 1.42 16 6 O -0.55 -10.11 12.28 -130.00 -1.60 -11.71 16 7 C 0.48 10.89 5.75 87.66 0.50 11.39 16 8 O -0.56 -18.28 13.76 15.94 0.22 -18.07 16 9 N -0.65 -13.30 5.30 -303.51 -1.61 -14.91 16 10 C 0.12 3.49 6.30 38.15 0.24 3.73 16 11 C -0.12 -3.57 9.97 22.39 0.22 -3.35 16 12 C -0.11 -4.30 9.69 22.25 0.22 -4.09 16 13 C -0.07 -3.31 5.07 -19.84 -0.10 -3.41 16 14 C 0.06 3.10 5.10 29.10 0.15 3.25 16 15 C -0.53 -30.54 9.09 25.60 0.23 -30.31 16 16 H 0.06 3.17 7.74 -2.91 -0.02 3.14 16 17 C 0.00 0.15 5.46 84.66 0.46 0.61 16 18 N -0.93 -56.82 13.29 21.45 0.28 -56.54 16 19 Si 0.97 44.65 29.54 68.60 2.03 46.68 16 20 H -0.26 -11.75 7.11 99.48 0.71 -11.04 16 21 H -0.27 -12.15 7.11 99.48 0.71 -11.45 16 22 H -0.28 -12.55 7.11 99.48 0.71 -11.84 16 23 C -0.12 -5.31 9.69 22.25 0.22 -5.10 16 24 C -0.13 -4.69 8.70 22.39 0.19 -4.49 16 25 H 0.05 0.55 7.68 -2.39 -0.02 0.54 16 26 H 0.07 0.43 8.14 -2.39 -0.02 0.41 16 27 H 0.07 0.41 8.14 -2.39 -0.02 0.39 16 28 H 0.10 0.65 8.09 -2.39 -0.02 0.63 16 29 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 30 H 0.06 0.77 6.78 -2.39 -0.02 0.75 16 31 H 0.03 0.64 7.22 -2.39 -0.02 0.62 16 32 H 0.39 6.40 7.08 -74.06 -0.52 5.87 16 33 H 0.43 4.87 8.78 -92.70 -0.81 4.06 16 34 H 0.16 3.15 8.06 -2.91 -0.02 3.13 16 35 H 0.13 4.57 8.06 -2.91 -0.02 4.55 16 36 H 0.01 0.43 8.08 -2.38 -0.02 0.41 16 37 H 0.00 -0.14 8.08 -2.39 -0.02 -0.16 16 38 H 0.27 15.11 8.31 -92.71 -0.77 14.34 16 39 H 0.11 4.72 8.06 -2.91 -0.02 4.69 16 40 H 0.12 4.71 6.22 -2.91 -0.02 4.69 16 Total: -1.00 -74.48 334.76 2.71 -71.77 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -0.29 Total: 15.97 kcal Atomic # 6 Polarization: -36.87 SS G_CDS: 3.67 Total: -33.19 kcal Atomic # 7 Polarization: -70.13 SS G_CDS: -1.32 Total: -71.45 kcal Atomic # 8 Polarization: -28.40 SS G_CDS: -1.38 Total: -29.77 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.68 kcal Total: -74.48 2.71 -71.77 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928400426.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.732 kcal (2) G-P(sol) polarization free energy of solvation -74.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -105.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.715 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds