Wall clock time and date at job start Mon Mar 30 2020 01:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47226 * 2 1 4 4 O 1.42902 * 109.47357 * 240.00652 * 2 1 3 5 5 C 1.52998 * 109.47525 * 120.00222 * 2 1 3 6 6 C 1.50698 * 109.46870 * 60.00060 * 5 2 1 7 7 O 1.21284 * 120.00445 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00120 * 180.02562 * 6 5 2 9 9 C 1.39929 * 120.00330 * 185.27166 * 8 6 5 10 10 C 1.38871 * 120.06427 * 33.29173 * 9 8 6 11 11 C 1.38112 * 119.92493 * 180.02562 * 10 9 8 12 12 C 1.38282 * 120.07478 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.93398 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47137 * 89.99687 * 13 12 11 15 15 H 1.08000 * 120.00327 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99965 * 180.27849 * 14 13 12 17 17 N 1.31521 * 120.00072 * 359.71988 * 16 14 13 18 18 Si 1.86807 * 120.00293 * 179.72747 * 16 14 13 19 19 H 1.48499 * 109.46814 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47322 * 119.99684 * 18 16 14 21 21 H 1.48500 * 109.47021 * 239.99886 * 18 16 14 22 22 C 1.38291 * 120.13592 * 0.25163 * 12 11 10 23 23 C 1.38115 * 120.06850 * 359.48844 * 22 12 11 24 24 H 1.08989 * 109.47471 * 299.99511 * 1 2 3 25 25 H 1.09004 * 109.47180 * 59.99911 * 1 2 3 26 26 H 1.09004 * 109.46791 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47461 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47247 * 300.00385 * 3 2 1 29 29 H 1.09003 * 109.46615 * 59.99879 * 3 2 1 30 30 H 0.96706 * 114.00474 * 180.02562 * 4 2 1 31 31 H 1.09003 * 109.46894 * 300.00474 * 5 2 1 32 32 H 1.08999 * 109.47633 * 179.97438 * 5 2 1 33 33 H 0.97001 * 119.99823 * 5.28307 * 8 6 5 34 34 H 1.08002 * 120.04284 * 0.02562 * 10 9 8 35 35 H 1.08005 * 119.96508 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.46787 * 329.99573 * 13 12 11 37 37 H 1.08997 * 109.47216 * 210.00042 * 13 12 11 38 38 H 0.97000 * 119.99850 * 179.97438 * 17 16 14 39 39 H 1.07999 * 119.95962 * 179.74998 * 22 12 11 40 40 H 1.08006 * 120.03042 * 180.25604 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 -1.1669 5 6 2.0401 -0.7213 1.2492 6 6 1.5378 -2.1421 1.2491 7 8 0.8408 -2.5389 0.3392 8 7 1.8630 -2.9719 2.2601 9 6 1.4902 -4.3196 2.2066 10 6 1.4387 -4.9793 0.9857 11 6 1.0699 -6.3093 0.9362 12 6 0.7516 -6.9840 2.1006 13 6 0.3491 -8.4350 2.0429 14 6 1.5748 -9.3019 2.1732 15 1 2.5480 -8.8476 2.2870 16 6 1.4545 -10.6750 2.1421 17 7 0.2693 -11.2284 2.0041 18 14 2.9747 -11.7497 2.2960 19 1 4.1766 -10.8893 2.4393 20 1 2.8450 -12.6226 3.4903 21 1 3.1111 -12.5913 1.0802 22 6 0.7964 -6.3282 3.3173 23 6 1.1697 -4.9997 3.3741 24 1 -0.3634 0.5137 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 2.9704 -0.7120 -1.2328 31 1 1.6767 -0.2075 2.1392 32 1 3.1300 -0.7217 1.2490 33 1 2.3553 -2.6349 3.0249 34 1 1.6867 -4.4529 0.0758 35 1 1.0292 -6.8229 -0.0130 36 1 -0.1404 -8.6386 1.0905 37 1 -0.3393 -8.6539 2.8592 38 1 0.1848 -12.1944 1.9818 39 1 0.5434 -6.8568 4.2245 40 1 1.2085 -4.4893 4.3252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928400432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:55 Heat of formation + Delta-G solvation = -73.899768 kcal Electronic energy + Delta-G solvation = -20917.727790 eV Core-core repulsion = 17696.904914 eV Total energy + Delta-G solvation = -3220.822876 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.53963 -38.71126 -37.41471 -34.80585 -33.08300 -32.84503 -30.67305 -30.27120 -28.69040 -27.54079 -26.32741 -23.31923 -22.35901 -21.27805 -20.33932 -19.92668 -17.83198 -16.90093 -16.44396 -16.26931 -15.81822 -15.05132 -14.79661 -14.71711 -14.24107 -14.07772 -13.85036 -13.07323 -12.82105 -12.79201 -12.54194 -12.43762 -12.37472 -12.09422 -12.01756 -11.67908 -11.32983 -11.26613 -11.00906 -10.78340 -10.56762 -10.37367 -10.28293 -9.95999 -9.69317 -9.35048 -9.18003 -8.40921 -8.26135 -7.34344 -6.01893 -4.05887 1.88805 2.08674 2.76319 3.11070 3.30438 3.37978 3.42926 4.02442 4.32230 4.39296 4.48257 4.60304 4.67373 4.90701 5.04799 5.12797 5.29345 5.32106 5.45233 5.53654 5.60391 5.64583 5.74479 5.86228 5.97146 6.07986 6.15512 6.22540 6.34020 6.67430 6.81193 6.95815 7.19206 7.23723 7.52375 7.53710 7.56015 7.74279 7.89444 7.94076 8.26117 8.34859 8.99772 9.57805 11.07732 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039271 B = 0.003103 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.823078 B = 9022.259357 C = 9101.354747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.145 3.855 3 C -0.179 4.179 4 O -0.542 6.542 5 C -0.170 4.170 6 C 0.506 3.494 7 O -0.497 6.497 8 N -0.673 5.673 9 C 0.105 3.895 10 C -0.117 4.117 11 C -0.108 4.108 12 C -0.043 4.043 13 C 0.047 3.953 14 C -0.510 4.510 15 H 0.057 0.943 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.272 1.272 20 H -0.284 1.284 21 H -0.283 1.283 22 C -0.109 4.109 23 C -0.145 4.145 24 H 0.061 0.939 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.058 0.942 28 H 0.067 0.933 29 H 0.066 0.934 30 H 0.368 0.632 31 H 0.100 0.900 32 H 0.095 0.905 33 H 0.403 0.597 34 H 0.124 0.876 35 H 0.121 0.879 36 H 0.029 0.971 37 H 0.028 0.972 38 H 0.261 0.739 39 H 0.121 0.879 40 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.779 24.487 0.796 24.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.104 3.896 3 C -0.236 4.236 4 O -0.346 6.346 5 C -0.210 4.210 6 C 0.293 3.707 7 O -0.370 6.370 8 N -0.319 5.319 9 C 0.013 3.987 10 C -0.137 4.137 11 C -0.126 4.126 12 C -0.043 4.043 13 C 0.010 3.990 14 C -0.548 4.548 15 H 0.076 0.924 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.722 3.278 19 H -0.197 1.197 20 H -0.210 1.210 21 H -0.210 1.210 22 C -0.127 4.127 23 C -0.166 4.166 24 H 0.079 0.921 25 H 0.078 0.922 26 H 0.111 0.889 27 H 0.077 0.923 28 H 0.086 0.914 29 H 0.085 0.915 30 H 0.214 0.786 31 H 0.119 0.881 32 H 0.114 0.886 33 H 0.237 0.763 34 H 0.142 0.858 35 H 0.139 0.861 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.071 0.929 39 H 0.139 0.861 40 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 3.551 24.026 -0.020 24.287 hybrid contribution 1.780 -0.373 0.784 1.980 sum 5.331 23.653 0.764 24.259 Atomic orbital electron populations 1.22006 0.92216 1.05397 1.01487 1.20890 0.95724 0.89512 0.83518 1.22523 1.01323 0.96671 1.03094 1.86742 1.25718 1.79339 1.42847 1.22499 1.02805 0.93851 1.01871 1.20540 0.80648 0.87345 0.82185 1.90722 1.35120 1.76432 1.34735 1.43491 1.57242 1.08116 1.23021 1.17518 1.03662 0.82786 0.94729 1.20999 1.01645 0.94459 0.96580 1.21004 0.99705 0.93129 0.98810 1.20704 0.93761 0.97999 0.91863 1.18354 0.96986 0.85237 0.98379 1.21107 0.93095 0.90599 1.49990 0.92426 1.25024 0.96023 0.98111 0.95266 1.69973 1.22338 1.10766 1.50267 0.86486 0.83183 0.80420 0.77661 1.19688 1.20972 1.20951 1.20881 1.00483 0.93134 0.98238 1.20734 1.03885 0.95780 0.96160 0.92051 0.92212 0.88865 0.92330 0.91380 0.91543 0.78561 0.88137 0.88636 0.76271 0.85766 0.86126 0.95289 0.95336 0.92914 0.86074 0.86925 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.61 8.52 37.16 0.32 -1.29 16 2 C 0.14 1.29 0.98 -90.62 -0.09 1.20 16 3 C -0.18 -1.09 8.81 37.16 0.33 -0.76 16 4 O -0.54 -6.02 11.88 -53.49 -0.64 -6.65 16 5 C -0.17 -1.31 4.95 -27.88 -0.14 -1.45 16 6 C 0.51 6.30 7.13 -10.98 -0.08 6.22 16 7 O -0.50 -8.29 10.64 -12.71 -0.14 -8.43 16 8 N -0.67 -8.23 5.34 -9.86 -0.05 -8.28 16 9 C 0.11 1.74 6.28 -83.70 -0.53 1.22 16 10 C -0.12 -2.20 8.66 -39.39 -0.34 -2.54 16 11 C -0.11 -2.25 9.69 -39.61 -0.38 -2.64 16 12 C -0.04 -0.95 5.07 -104.59 -0.53 -1.48 16 13 C 0.05 1.24 5.10 -29.04 -0.15 1.09 16 14 C -0.51 -14.40 9.09 -34.44 -0.31 -14.72 16 15 H 0.06 1.62 7.74 -52.49 -0.41 1.21 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -26.67 13.29 55.43 0.74 -25.94 16 18 Si 0.89 21.66 29.54 -169.99 -5.02 16.64 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 21 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 22 C -0.11 -2.13 9.69 -39.61 -0.38 -2.51 16 23 C -0.15 -2.40 9.96 -39.40 -0.39 -2.79 16 24 H 0.06 0.51 8.14 -51.94 -0.42 0.08 16 25 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 26 H 0.09 1.29 5.51 -51.93 -0.29 1.01 16 27 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 28 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 29 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 30 H 0.37 2.65 9.05 45.56 0.41 3.07 16 31 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 32 H 0.10 0.52 8.14 -51.93 -0.42 0.10 16 33 H 0.40 3.40 8.82 -40.82 -0.36 3.04 16 34 H 0.12 2.33 6.42 -52.49 -0.34 2.00 16 35 H 0.12 2.48 8.06 -52.48 -0.42 2.06 16 36 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 37 H 0.03 0.77 8.08 -51.93 -0.42 0.35 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.99 16 39 H 0.12 2.26 8.06 -52.49 -0.42 1.84 16 40 H 0.11 1.48 8.06 -52.48 -0.42 1.06 16 LS Contribution 334.59 15.07 5.04 5.04 Total: -1.00 -34.07 334.59 -8.02 -42.09 By element: Atomic # 1 Polarization: 9.62 SS G_CDS: -5.18 Total: 4.44 kcal Atomic # 6 Polarization: -16.14 SS G_CDS: -2.78 Total: -18.92 kcal Atomic # 7 Polarization: -34.90 SS G_CDS: 0.68 Total: -34.22 kcal Atomic # 8 Polarization: -14.31 SS G_CDS: -0.77 Total: -15.08 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Total LS contribution 5.04 Total: 5.04 kcal Total: -34.07 -8.02 -42.09 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928400432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -31.805 kcal (2) G-P(sol) polarization free energy of solvation -34.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -65.878 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.095 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds