Wall clock time and date at job start Mon Mar 30 2020 01:47:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53000 * 109.47226 * 2 1 4 4 O 1.42902 * 109.47357 * 240.00652 * 2 1 3 5 5 C 1.52998 * 109.47525 * 120.00222 * 2 1 3 6 6 C 1.50698 * 109.46870 * 60.00060 * 5 2 1 7 7 O 1.21284 * 120.00445 * 0.02562 * 6 5 2 8 8 N 1.34780 * 120.00120 * 180.02562 * 6 5 2 9 9 C 1.39929 * 120.00330 * 185.27166 * 8 6 5 10 10 C 1.38871 * 120.06427 * 33.29173 * 9 8 6 11 11 C 1.38112 * 119.92493 * 180.02562 * 10 9 8 12 12 C 1.38282 * 120.07478 * 0.02562 * 11 10 9 13 13 C 1.50697 * 119.93398 * 179.97438 * 12 11 10 14 14 C 1.50697 * 109.47137 * 89.99687 * 13 12 11 15 15 H 1.08000 * 120.00327 * 0.02562 * 14 13 12 16 16 C 1.37873 * 119.99965 * 180.27849 * 14 13 12 17 17 N 1.31521 * 120.00072 * 359.71988 * 16 14 13 18 18 Si 1.86807 * 120.00293 * 179.72747 * 16 14 13 19 19 H 1.48499 * 109.46814 * 359.97438 * 18 16 14 20 20 H 1.48498 * 109.47322 * 119.99684 * 18 16 14 21 21 H 1.48500 * 109.47021 * 239.99886 * 18 16 14 22 22 C 1.38291 * 120.13592 * 0.25163 * 12 11 10 23 23 C 1.38115 * 120.06850 * 359.48844 * 22 12 11 24 24 H 1.08989 * 109.47471 * 299.99511 * 1 2 3 25 25 H 1.09004 * 109.47180 * 59.99911 * 1 2 3 26 26 H 1.09004 * 109.46791 * 179.97438 * 1 2 3 27 27 H 1.08995 * 109.47461 * 179.97438 * 3 2 1 28 28 H 1.08996 * 109.47247 * 300.00385 * 3 2 1 29 29 H 1.09003 * 109.46615 * 59.99879 * 3 2 1 30 30 H 0.96706 * 114.00474 * 180.02562 * 4 2 1 31 31 H 1.09003 * 109.46894 * 300.00474 * 5 2 1 32 32 H 1.08999 * 109.47633 * 179.97438 * 5 2 1 33 33 H 0.97001 * 119.99823 * 5.28307 * 8 6 5 34 34 H 1.08002 * 120.04284 * 0.02562 * 10 9 8 35 35 H 1.08005 * 119.96508 * 179.97438 * 11 10 9 36 36 H 1.08998 * 109.46787 * 329.99573 * 13 12 11 37 37 H 1.08997 * 109.47216 * 210.00042 * 13 12 11 38 38 H 0.97000 * 119.99850 * 179.97438 * 17 16 14 39 39 H 1.07999 * 119.95962 * 179.74998 * 22 12 11 40 40 H 1.08006 * 120.03042 * 180.25604 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6735 -1.1669 5 6 2.0401 -0.7213 1.2492 6 6 1.5378 -2.1421 1.2491 7 8 0.8408 -2.5389 0.3392 8 7 1.8630 -2.9719 2.2601 9 6 1.4902 -4.3196 2.2066 10 6 1.4387 -4.9793 0.9857 11 6 1.0699 -6.3093 0.9362 12 6 0.7516 -6.9840 2.1006 13 6 0.3491 -8.4350 2.0429 14 6 1.5748 -9.3019 2.1732 15 1 2.5480 -8.8476 2.2870 16 6 1.4545 -10.6750 2.1421 17 7 0.2693 -11.2284 2.0041 18 14 2.9747 -11.7497 2.2960 19 1 4.1766 -10.8893 2.4393 20 1 2.8450 -12.6226 3.4903 21 1 3.1111 -12.5913 1.0802 22 6 0.7964 -6.3282 3.3173 23 6 1.1697 -4.9997 3.3741 24 1 -0.3634 0.5137 0.8899 25 1 -0.3634 0.5139 -0.8900 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1299 1.4425 0.0005 28 1 1.6766 1.9563 -0.8899 29 1 1.6766 1.9563 0.8900 30 1 2.9704 -0.7120 -1.2328 31 1 1.6767 -0.2075 2.1392 32 1 3.1300 -0.7217 1.2490 33 1 2.3553 -2.6349 3.0249 34 1 1.6867 -4.4529 0.0758 35 1 1.0292 -6.8229 -0.0130 36 1 -0.1404 -8.6386 1.0905 37 1 -0.3393 -8.6539 2.8592 38 1 0.1848 -12.1944 1.9818 39 1 0.5434 -6.8568 4.2245 40 1 1.2085 -4.4893 4.3252 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928400432.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:47:55 Heat of formation + Delta-G solvation = -97.295389 kcal Electronic energy + Delta-G solvation = -20918.742300 eV Core-core repulsion = 17696.904914 eV Total energy + Delta-G solvation = -3221.837386 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.60023 -39.92535 -38.40747 -36.17741 -34.96352 -33.66227 -32.30716 -31.77086 -29.72789 -28.15807 -27.95924 -25.13278 -23.83626 -22.53006 -21.45834 -20.99098 -18.88521 -18.50732 -17.98686 -17.28854 -16.80172 -16.63962 -15.95824 -15.87500 -15.53901 -15.15351 -14.98663 -14.55591 -14.42616 -14.25913 -13.74596 -13.39431 -13.27791 -13.12996 -13.08124 -12.97188 -12.69676 -12.63220 -12.47191 -12.41282 -11.98586 -11.66384 -11.61853 -11.50039 -11.08053 -10.95785 -10.61596 -10.44283 -9.76053 -8.83462 -8.18538 -6.33801 0.46146 0.57029 1.39328 1.40098 1.53739 1.73647 2.13679 2.39969 3.01410 3.10338 3.41180 3.63523 3.85720 4.02544 4.09487 4.15463 4.26560 4.38206 4.60747 4.61934 4.63041 4.66748 4.77326 4.79441 4.93776 5.05664 5.10901 5.12554 5.31246 5.32155 5.35005 5.43378 5.46036 5.54481 5.64810 5.75587 6.08176 6.12958 6.26331 6.57341 6.79197 6.99332 7.31843 7.34861 8.89562 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039271 B = 0.003103 C = 0.003076 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.823078 B = 9022.259357 C = 9101.354747 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.138 3.862 3 C -0.170 4.170 4 O -0.575 6.575 5 C -0.157 4.157 6 C 0.501 3.499 7 O -0.543 6.543 8 N -0.661 5.661 9 C 0.123 3.877 10 C -0.124 4.124 11 C -0.122 4.122 12 C -0.076 4.076 13 C 0.057 3.943 14 C -0.526 4.526 15 H 0.056 0.944 16 C 0.001 3.999 17 N -0.932 5.932 18 Si 0.968 3.032 19 H -0.264 1.264 20 H -0.274 1.274 21 H -0.278 1.278 22 C -0.114 4.114 23 C -0.130 4.130 24 H 0.084 0.916 25 H 0.050 0.950 26 H 0.054 0.946 27 H 0.077 0.923 28 H 0.057 0.943 29 H 0.084 0.916 30 H 0.382 0.618 31 H 0.135 0.865 32 H 0.129 0.871 33 H 0.426 0.574 34 H 0.122 0.878 35 H 0.106 0.894 36 H -0.003 1.003 37 H 0.006 0.994 38 H 0.265 0.735 39 H 0.126 0.874 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.214 27.341 2.763 28.411 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.097 3.903 3 C -0.227 4.227 4 O -0.382 6.382 5 C -0.197 4.197 6 C 0.290 3.710 7 O -0.419 6.419 8 N -0.309 5.309 9 C 0.029 3.971 10 C -0.145 4.145 11 C -0.141 4.141 12 C -0.077 4.077 13 C 0.020 3.980 14 C -0.564 4.564 15 H 0.074 0.926 16 C -0.196 4.196 17 N -0.572 5.572 18 Si 0.793 3.207 19 H -0.188 1.188 20 H -0.199 1.199 21 H -0.204 1.204 22 C -0.133 4.133 23 C -0.150 4.150 24 H 0.103 0.897 25 H 0.070 0.930 26 H 0.073 0.927 27 H 0.096 0.904 28 H 0.076 0.924 29 H 0.103 0.897 30 H 0.231 0.769 31 H 0.153 0.847 32 H 0.147 0.853 33 H 0.265 0.735 34 H 0.140 0.860 35 H 0.124 0.876 36 H 0.015 0.985 37 H 0.025 0.975 38 H 0.074 0.926 39 H 0.144 0.856 40 H 0.177 0.823 Dipole moment (debyes) X Y Z Total from point charges 6.017 26.925 1.974 27.660 hybrid contribution 0.965 -1.126 0.136 1.489 sum 6.983 25.799 2.109 26.811 Atomic orbital electron populations 1.22019 0.94105 1.03015 1.02278 1.21049 0.94510 0.91303 0.83435 1.22426 1.02464 0.94281 1.03522 1.86709 1.27234 1.80013 1.44232 1.22547 1.04657 0.89961 1.02537 1.21525 0.79473 0.89033 0.80959 1.90738 1.37122 1.77601 1.36475 1.43472 1.57108 1.06082 1.24194 1.17606 1.01083 0.84737 0.93684 1.20983 1.02112 0.93505 0.97866 1.20911 1.00948 0.94318 0.97926 1.20380 0.97309 0.96202 0.93824 1.18088 0.95906 0.88365 0.95643 1.21413 0.93561 0.91439 1.50005 0.92617 1.25979 0.99403 0.99609 0.94642 1.70101 1.24720 1.11326 1.51070 0.85347 0.79105 0.78339 0.77959 1.18773 1.19921 1.20365 1.20989 1.00523 0.94669 0.97087 1.21054 1.01622 0.94329 0.98039 0.89745 0.93038 0.92672 0.90431 0.92382 0.89731 0.76938 0.84725 0.85291 0.73469 0.86044 0.87570 0.98476 0.97533 0.92570 0.85641 0.82265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.11 8.52 71.98 0.61 -2.50 16 2 C 0.14 2.09 0.98 -10.80 -0.01 2.08 16 3 C -0.17 -1.43 8.81 71.98 0.63 -0.79 16 4 O -0.57 -12.10 11.88 -131.52 -1.56 -13.66 16 5 C -0.16 -1.73 4.95 29.85 0.15 -1.58 16 6 C 0.50 11.12 7.13 87.66 0.62 11.75 16 7 O -0.54 -17.91 10.64 14.42 0.15 -17.76 16 8 N -0.66 -13.73 5.34 -303.51 -1.62 -15.35 16 9 C 0.12 3.80 6.28 38.15 0.24 4.04 16 10 C -0.12 -4.72 8.66 22.39 0.19 -4.53 16 11 C -0.12 -5.37 9.69 22.25 0.22 -5.16 16 12 C -0.08 -3.56 5.07 -19.84 -0.10 -3.66 16 13 C 0.06 3.18 5.10 29.10 0.15 3.33 16 14 C -0.53 -30.84 9.09 25.60 0.23 -30.61 16 15 H 0.06 3.21 7.74 -2.91 -0.02 3.18 16 16 C 0.00 0.09 5.46 84.65 0.46 0.55 16 17 N -0.93 -57.42 13.29 21.45 0.28 -57.13 16 18 Si 0.97 44.97 29.54 68.60 2.03 46.99 16 19 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.27 -12.22 7.11 99.48 0.71 -11.51 16 21 H -0.28 -12.59 7.11 99.48 0.71 -11.89 16 22 C -0.11 -4.42 9.69 22.25 0.22 -4.21 16 23 C -0.13 -3.94 9.96 22.39 0.22 -3.72 16 24 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 25 H 0.05 1.05 8.14 -2.38 -0.02 1.03 16 26 H 0.05 1.55 5.51 -2.38 -0.01 1.53 16 27 H 0.08 0.38 8.14 -2.39 -0.02 0.36 16 28 H 0.06 0.62 8.14 -2.39 -0.02 0.61 16 29 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.38 4.85 9.05 -74.05 -0.67 4.18 16 31 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 32 H 0.13 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.43 4.93 8.82 -92.71 -0.82 4.11 16 34 H 0.12 4.66 6.42 -2.91 -0.02 4.64 16 35 H 0.11 4.77 8.06 -2.91 -0.02 4.75 16 36 H 0.00 -0.19 8.08 -2.39 -0.02 -0.21 16 37 H 0.01 0.37 8.08 -2.39 -0.02 0.35 16 38 H 0.27 15.24 8.31 -92.71 -0.77 14.47 16 39 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 40 H 0.16 3.34 8.06 -2.91 -0.02 3.32 16 Total: -1.00 -79.24 334.59 2.69 -76.56 By element: Atomic # 1 Polarization: 15.80 SS G_CDS: -0.44 Total: 15.37 kcal Atomic # 6 Polarization: -38.85 SS G_CDS: 3.84 Total: -35.01 kcal Atomic # 7 Polarization: -71.15 SS G_CDS: -1.34 Total: -72.48 kcal Atomic # 8 Polarization: -30.01 SS G_CDS: -1.41 Total: -31.42 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 46.99 kcal Total: -79.24 2.69 -76.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928400432.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.740 kcal (2) G-P(sol) polarization free energy of solvation -79.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -99.981 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.555 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.295 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds