Wall clock time and date at job start Mon Mar 30 2020 02:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.47120 * 2 1 4 4 C 1.52999 * 109.46812 * 240.00164 * 2 1 3 5 5 O 1.42903 * 109.47140 * 60.00098 * 4 2 1 6 6 C 1.50695 * 109.47234 * 120.00193 * 2 1 3 7 7 O 1.21288 * 119.99814 * 119.99632 * 6 2 1 8 8 N 1.34778 * 119.99838 * 300.00145 * 6 2 1 9 9 C 1.39927 * 119.99585 * 185.27077 * 8 6 2 10 10 C 1.38874 * 120.07215 * 33.29114 * 9 8 6 11 11 C 1.38112 * 119.93099 * 180.02562 * 10 9 8 12 12 C 1.38283 * 120.07013 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.92860 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46706 * 90.00245 * 13 12 11 15 15 H 1.07999 * 120.00604 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99849 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00008 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00113 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47329 * 89.99565 * 18 16 14 20 20 H 1.48497 * 109.47377 * 209.99735 * 18 16 14 21 21 H 1.48501 * 109.47197 * 329.99922 * 18 16 14 22 22 C 1.38286 * 120.13828 * 0.25319 * 12 11 10 23 23 C 1.38105 * 120.07308 * 359.48773 * 22 12 11 24 24 H 1.09001 * 109.46534 * 299.99714 * 1 2 3 25 25 H 1.08998 * 109.46720 * 59.99458 * 1 2 3 26 26 H 1.08995 * 109.46949 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47110 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47261 * 300.00476 * 3 2 1 29 29 H 1.09005 * 109.46583 * 60.00283 * 3 2 1 30 30 H 1.08998 * 109.47051 * 179.97438 * 4 2 1 31 31 H 1.08993 * 109.47384 * 300.00082 * 4 2 1 32 32 H 0.96696 * 113.99774 * 180.02562 * 5 4 2 33 33 H 0.96994 * 120.00037 * 5.27153 * 8 6 2 34 34 H 1.08001 * 120.03469 * 359.97438 * 10 9 8 35 35 H 1.07997 * 119.96629 * 179.97438 * 11 10 9 36 36 H 1.09001 * 109.47113 * 210.00070 * 13 12 11 37 37 H 1.08995 * 109.47338 * 330.00260 * 13 12 11 38 38 H 0.96996 * 119.99982 * 180.02562 * 17 16 14 39 39 H 1.08002 * 119.95762 * 179.74594 * 22 12 11 40 40 H 1.08004 * 120.04052 * 180.25141 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.5636 -0.0475 -2.4160 6 6 2.0324 -0.7104 1.2304 7 8 2.7297 -1.6966 1.1190 8 7 1.7068 -0.2500 2.4545 9 6 2.2615 -0.8416 3.5948 10 6 3.5520 -1.3531 3.5556 11 6 4.0964 -1.9369 4.6827 12 6 3.3577 -2.0129 5.8492 13 6 3.9547 -2.6511 7.0769 14 6 4.6659 -1.6024 7.8927 15 1 4.6842 -0.5765 7.5557 16 6 5.2942 -1.9529 9.0689 17 7 5.2724 -3.2023 9.4792 18 14 6.1763 -0.6532 10.0798 19 1 5.2281 -0.0560 11.0543 20 1 7.3084 -1.2780 10.8100 21 1 6.6937 0.4079 9.1789 22 6 2.0703 -1.5097 5.8898 23 6 1.5221 -0.9199 4.7678 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 3.1300 -0.7208 -1.2495 31 1 1.6767 -1.7488 -1.2493 32 1 1.8486 -0.4513 -3.2472 33 1 1.0880 0.4914 2.5450 34 1 4.1290 -1.2951 2.6445 35 1 5.0998 -2.3352 4.6527 36 1 3.1618 -3.1006 7.6747 37 1 4.6649 -3.4216 6.7770 38 1 5.7141 -3.4487 10.3068 39 1 1.4945 -1.5743 6.8012 40 1 0.5180 -0.5234 4.8013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928401118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:11 Heat of formation + Delta-G solvation = -78.212750 kcal Electronic energy + Delta-G solvation = -20966.503319 eV Core-core repulsion = 17745.493418 eV Total energy + Delta-G solvation = -3221.009901 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.76640 -38.59188 -37.28412 -35.03130 -34.50335 -32.93857 -30.41257 -30.29183 -27.66150 -26.76561 -26.48241 -23.92485 -22.50300 -22.19494 -20.29657 -19.37059 -18.07786 -17.33466 -16.32718 -16.28973 -15.69736 -15.12920 -14.81332 -14.78550 -14.38597 -14.22153 -13.91481 -13.10831 -13.00504 -12.90358 -12.84103 -12.55046 -12.38983 -12.35183 -12.01082 -11.51524 -11.36725 -11.28476 -11.01496 -10.81339 -10.60671 -10.36391 -10.28129 -10.02572 -9.80050 -9.41761 -9.26074 -8.42085 -8.30260 -7.39380 -6.03342 -4.07484 1.81805 2.04679 2.66876 2.94643 3.30487 3.36821 3.41032 3.98169 4.29531 4.38109 4.48405 4.56692 4.62142 4.89869 5.26960 5.27052 5.30565 5.34035 5.41367 5.50545 5.52285 5.55919 5.60284 5.87623 5.90646 5.94423 6.04497 6.10474 6.19012 6.63097 6.75878 6.88467 7.15599 7.19752 7.27416 7.46814 7.51938 7.69634 7.86547 7.92389 8.12041 8.32840 8.97879 9.56236 11.06273 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039465 B = 0.003145 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.310626 B = 8901.628209 C = 8930.126448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.080 4.080 3 C -0.137 4.137 4 C 0.099 3.901 5 O -0.572 6.572 6 C 0.521 3.479 7 O -0.522 6.522 8 N -0.663 5.663 9 C 0.104 3.896 10 C -0.117 4.117 11 C -0.108 4.108 12 C -0.041 4.041 13 C 0.048 3.952 14 C -0.511 4.511 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.895 3.105 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.273 1.273 22 C -0.108 4.108 23 C -0.143 4.143 24 H 0.059 0.941 25 H 0.077 0.923 26 H 0.060 0.940 27 H 0.060 0.940 28 H 0.077 0.923 29 H 0.060 0.940 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.382 0.618 33 H 0.405 0.595 34 H 0.123 0.877 35 H 0.121 0.879 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.262 0.738 39 H 0.122 0.878 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.727 7.824 -20.195 23.742 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.083 4.083 3 C -0.194 4.194 4 C 0.021 3.979 5 O -0.378 6.378 6 C 0.308 3.692 7 O -0.397 6.397 8 N -0.307 5.307 9 C 0.011 3.989 10 C -0.137 4.137 11 C -0.126 4.126 12 C -0.042 4.042 13 C 0.011 3.989 14 C -0.549 4.549 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.206 1.206 20 H -0.212 1.212 21 H -0.198 1.198 22 C -0.127 4.127 23 C -0.163 4.163 24 H 0.078 0.922 25 H 0.096 0.904 26 H 0.079 0.921 27 H 0.079 0.921 28 H 0.096 0.904 29 H 0.079 0.921 30 H 0.074 0.926 31 H 0.073 0.927 32 H 0.229 0.771 33 H 0.241 0.759 34 H 0.140 0.860 35 H 0.139 0.861 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.140 0.860 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -9.429 7.403 -19.728 23.085 hybrid contribution 0.464 0.648 0.352 0.871 sum -8.966 8.051 -19.376 22.818 Atomic orbital electron populations 1.21808 0.91779 1.02810 1.03081 1.20704 0.98162 0.97232 0.92221 1.21801 1.01579 0.92961 1.03098 1.21841 0.97873 0.94387 0.83768 1.86367 1.77719 1.57559 1.16112 1.20420 0.80426 0.84087 0.84313 1.90734 1.37295 1.25215 1.86501 1.43337 1.47077 1.35798 1.04521 1.17525 0.93184 1.01912 0.86229 1.20971 0.93384 1.00417 0.98917 1.20997 0.99935 0.99742 0.91968 1.20718 0.92816 0.94504 0.96151 1.18353 0.96010 0.95711 0.88848 1.21067 1.33437 0.94619 1.05810 0.92460 1.25020 0.96371 0.95415 0.97571 1.69960 1.44068 1.16602 1.22698 0.86536 0.79316 0.81633 0.80218 1.20610 1.21172 1.19810 1.20889 0.95857 0.98674 0.97231 1.20741 0.98883 1.03605 0.93066 0.92188 0.90373 0.92104 0.92085 0.90402 0.92091 0.92649 0.92670 0.77062 0.75940 0.85956 0.86067 0.95304 0.95282 0.92843 0.85972 0.86796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.11 8.22 37.16 0.31 -0.80 16 2 C -0.08 -0.77 0.71 -155.66 -0.11 -0.88 16 3 C -0.14 -1.15 8.23 37.16 0.31 -0.84 16 4 C 0.10 0.94 5.20 37.16 0.19 1.13 16 5 O -0.57 -4.47 12.31 -35.23 -0.43 -4.91 16 6 C 0.52 6.86 6.22 -10.99 -0.07 6.79 16 7 O -0.52 -8.84 13.67 5.55 0.08 -8.76 16 8 N -0.66 -8.42 5.12 -9.86 -0.05 -8.47 16 9 C 0.10 1.71 6.28 -83.69 -0.53 1.19 16 10 C -0.12 -2.18 8.66 -39.39 -0.34 -2.52 16 11 C -0.11 -2.22 9.69 -39.61 -0.38 -2.60 16 12 C -0.04 -0.91 5.07 -104.59 -0.53 -1.44 16 13 C 0.05 1.23 5.10 -29.04 -0.15 1.09 16 14 C -0.51 -14.34 9.09 -34.44 -0.31 -14.66 16 15 H 0.06 1.59 7.74 -52.49 -0.41 1.19 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 17 N -0.89 -26.52 13.29 55.43 0.74 -25.78 16 18 Si 0.90 21.56 29.54 -169.99 -5.02 16.54 16 19 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 20 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 21 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 22 C -0.11 -2.09 9.69 -39.61 -0.38 -2.47 16 23 C -0.14 -2.34 9.96 -39.39 -0.39 -2.73 16 24 H 0.06 0.40 7.45 -51.93 -0.39 0.01 16 25 H 0.08 0.60 7.68 -51.93 -0.40 0.20 16 26 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 28 H 0.08 0.62 7.68 -51.93 -0.40 0.22 16 29 H 0.06 0.44 7.69 -51.93 -0.40 0.04 16 30 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 31 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 32 H 0.38 1.40 9.12 45.56 0.42 1.82 16 33 H 0.41 3.78 7.68 -40.82 -0.31 3.47 16 34 H 0.12 2.24 6.41 -52.49 -0.34 1.91 16 35 H 0.12 2.44 8.06 -52.49 -0.42 2.02 16 36 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.03 0.79 8.08 -51.93 -0.42 0.37 16 38 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 39 H 0.12 2.26 8.06 -52.49 -0.42 1.83 16 40 H 0.11 1.49 8.06 -52.48 -0.42 1.06 16 LS Contribution 335.42 15.07 5.05 5.05 Total: -1.00 -33.01 335.42 -7.28 -40.29 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -5.15 Total: 3.25 kcal Atomic # 6 Polarization: -14.72 SS G_CDS: -2.49 Total: -17.21 kcal Atomic # 7 Polarization: -34.93 SS G_CDS: 0.69 Total: -34.25 kcal Atomic # 8 Polarization: -13.31 SS G_CDS: -0.36 Total: -13.67 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.54 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -33.01 -7.28 -40.29 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -37.921 kcal (2) G-P(sol) polarization free energy of solvation -33.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.292 kcal (6) G-S(sol) free energy of system = (1) + (5) -78.213 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds