Wall clock time and date at job start Mon Mar 30 2020 02:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 C 1.53003 * 109.47120 * 2 1 4 4 C 1.52999 * 109.46812 * 240.00164 * 2 1 3 5 5 O 1.42903 * 109.47140 * 60.00098 * 4 2 1 6 6 C 1.50695 * 109.47234 * 120.00193 * 2 1 3 7 7 O 1.21288 * 119.99814 * 119.99632 * 6 2 1 8 8 N 1.34778 * 119.99838 * 300.00145 * 6 2 1 9 9 C 1.39927 * 119.99585 * 185.27077 * 8 6 2 10 10 C 1.38874 * 120.07215 * 33.29114 * 9 8 6 11 11 C 1.38112 * 119.93099 * 180.02562 * 10 9 8 12 12 C 1.38283 * 120.07013 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.92860 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46706 * 90.00245 * 13 12 11 15 15 H 1.07999 * 120.00604 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99849 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00008 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00113 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47329 * 89.99565 * 18 16 14 20 20 H 1.48497 * 109.47377 * 209.99735 * 18 16 14 21 21 H 1.48501 * 109.47197 * 329.99922 * 18 16 14 22 22 C 1.38286 * 120.13828 * 0.25319 * 12 11 10 23 23 C 1.38105 * 120.07308 * 359.48773 * 22 12 11 24 24 H 1.09001 * 109.46534 * 299.99714 * 1 2 3 25 25 H 1.08998 * 109.46720 * 59.99458 * 1 2 3 26 26 H 1.08995 * 109.46949 * 180.02562 * 1 2 3 27 27 H 1.08998 * 109.47110 * 180.02562 * 3 2 1 28 28 H 1.08997 * 109.47261 * 300.00476 * 3 2 1 29 29 H 1.09005 * 109.46583 * 60.00283 * 3 2 1 30 30 H 1.08998 * 109.47051 * 179.97438 * 4 2 1 31 31 H 1.08993 * 109.47384 * 300.00082 * 4 2 1 32 32 H 0.96696 * 113.99774 * 180.02562 * 5 4 2 33 33 H 0.96994 * 120.00037 * 5.27153 * 8 6 2 34 34 H 1.08001 * 120.03469 * 359.97438 * 10 9 8 35 35 H 1.07997 * 119.96629 * 179.97438 * 11 10 9 36 36 H 1.09001 * 109.47113 * 210.00070 * 13 12 11 37 37 H 1.08995 * 109.47338 * 330.00260 * 13 12 11 38 38 H 0.96996 * 119.99982 * 180.02562 * 17 16 14 39 39 H 1.08002 * 119.95762 * 179.74594 * 22 12 11 40 40 H 1.08004 * 120.04052 * 180.25141 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2493 5 8 1.5636 -0.0475 -2.4160 6 6 2.0324 -0.7104 1.2304 7 8 2.7297 -1.6966 1.1190 8 7 1.7068 -0.2500 2.4545 9 6 2.2615 -0.8416 3.5948 10 6 3.5520 -1.3531 3.5556 11 6 4.0964 -1.9369 4.6827 12 6 3.3577 -2.0129 5.8492 13 6 3.9547 -2.6511 7.0769 14 6 4.6659 -1.6024 7.8927 15 1 4.6842 -0.5765 7.5557 16 6 5.2942 -1.9529 9.0689 17 7 5.2724 -3.2023 9.4792 18 14 6.1763 -0.6532 10.0798 19 1 5.2281 -0.0560 11.0543 20 1 7.3084 -1.2780 10.8100 21 1 6.6937 0.4079 9.1789 22 6 2.0703 -1.5097 5.8898 23 6 1.5221 -0.9199 4.7678 24 1 -0.3632 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 3.1301 1.4425 -0.0005 28 1 1.6767 1.9564 -0.8899 29 1 1.6767 1.9563 0.8901 30 1 3.1300 -0.7208 -1.2495 31 1 1.6767 -1.7488 -1.2493 32 1 1.8486 -0.4513 -3.2472 33 1 1.0880 0.4914 2.5450 34 1 4.1290 -1.2951 2.6445 35 1 5.0998 -2.3352 4.6527 36 1 3.1618 -3.1006 7.6747 37 1 4.6649 -3.4216 6.7770 38 1 5.7141 -3.4487 10.3068 39 1 1.4945 -1.5743 6.8012 40 1 0.5180 -0.5234 4.8013 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928401118.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:10 Heat of formation + Delta-G solvation = -100.916650 kcal Electronic energy + Delta-G solvation = -20967.487834 eV Core-core repulsion = 17745.493418 eV Total energy + Delta-G solvation = -3221.994416 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.87318 -39.91771 -38.14489 -36.35620 -35.47066 -34.78775 -32.11395 -31.79873 -28.52465 -28.28276 -27.20473 -25.54191 -24.02357 -23.54850 -21.81016 -20.41637 -18.88437 -18.52849 -18.42992 -17.30206 -16.86929 -16.60319 -15.96306 -15.89805 -15.74638 -15.26425 -15.13696 -14.56433 -14.50556 -14.30437 -13.75703 -13.69109 -13.48943 -13.28266 -13.19875 -13.14700 -12.94802 -12.61486 -12.46027 -12.17083 -12.02382 -11.71396 -11.64359 -11.52614 -11.10371 -10.94343 -10.71827 -10.60165 -9.78671 -8.89747 -8.18540 -6.33316 0.39903 0.54964 1.39921 1.41443 1.52108 1.54598 1.91580 2.40181 2.98352 3.10866 3.29274 3.44633 3.77666 3.95875 4.02013 4.12426 4.19998 4.36709 4.55003 4.58320 4.60086 4.63102 4.72191 4.74120 4.85867 4.89054 4.96729 5.09730 5.27674 5.28906 5.31869 5.33351 5.40478 5.46157 5.58442 5.75205 6.06668 6.10558 6.23330 6.39420 6.79507 6.84397 7.07763 7.35270 8.89665 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039465 B = 0.003145 C = 0.003135 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 709.310626 B = 8901.628209 C = 8930.126448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.074 4.074 3 C -0.134 4.134 4 C 0.103 3.897 5 O -0.574 6.574 6 C 0.520 3.480 7 O -0.563 6.563 8 N -0.650 5.650 9 C 0.119 3.881 10 C -0.124 4.124 11 C -0.120 4.120 12 C -0.073 4.073 13 C 0.057 3.943 14 C -0.528 4.528 15 H 0.056 0.944 16 C 0.003 3.997 17 N -0.931 5.931 18 Si 0.967 3.033 19 H -0.269 1.269 20 H -0.281 1.281 21 H -0.266 1.266 22 C -0.113 4.113 23 C -0.127 4.127 24 H 0.079 0.921 25 H 0.086 0.914 26 H 0.053 0.947 27 H 0.050 0.950 28 H 0.086 0.914 29 H 0.077 0.923 30 H 0.044 0.956 31 H 0.046 0.954 32 H 0.400 0.600 33 H 0.426 0.574 34 H 0.122 0.878 35 H 0.110 0.890 36 H 0.007 0.993 37 H -0.002 1.002 38 H 0.265 0.735 39 H 0.127 0.873 40 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.466 10.521 -21.330 26.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.077 4.077 3 C -0.192 4.192 4 C 0.024 3.976 5 O -0.382 6.382 6 C 0.309 3.691 7 O -0.440 6.440 8 N -0.296 5.296 9 C 0.025 3.975 10 C -0.144 4.144 11 C -0.139 4.139 12 C -0.074 4.074 13 C 0.020 3.980 14 C -0.565 4.565 15 H 0.074 0.926 16 C -0.195 4.195 17 N -0.571 5.571 18 Si 0.791 3.209 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.191 1.191 22 C -0.131 4.131 23 C -0.147 4.147 24 H 0.098 0.902 25 H 0.104 0.896 26 H 0.072 0.928 27 H 0.069 0.931 28 H 0.105 0.895 29 H 0.096 0.904 30 H 0.062 0.938 31 H 0.064 0.936 32 H 0.250 0.750 33 H 0.266 0.734 34 H 0.140 0.860 35 H 0.128 0.872 36 H 0.025 0.975 37 H 0.017 0.983 38 H 0.074 0.926 39 H 0.145 0.855 40 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -11.198 10.130 -20.898 25.783 hybrid contribution 0.953 -0.209 0.550 1.120 sum -10.246 9.921 -20.348 24.849 Atomic orbital electron populations 1.21824 0.90039 1.02812 1.04502 1.20705 0.99376 0.97434 0.90192 1.21813 1.00967 0.91980 1.04394 1.21697 0.97206 0.94094 0.84600 1.86321 1.77686 1.57634 1.16582 1.21126 0.79338 0.83497 0.85161 1.90728 1.39052 1.27186 1.87053 1.43263 1.47019 1.36052 1.03290 1.17607 0.92220 1.00114 0.87550 1.20981 0.94655 1.00771 0.97984 1.20916 0.99719 1.00769 0.92514 1.20406 0.94680 0.97269 0.95053 1.18090 0.94642 0.94867 0.90393 1.21389 1.33801 0.94935 1.06423 0.92584 1.25958 0.97087 0.97670 0.98812 1.70088 1.45013 1.18715 1.23333 0.85413 0.78158 0.78772 0.78522 1.19414 1.20631 1.19055 1.20992 0.94716 0.98670 0.98741 1.21048 1.00418 1.01779 0.91411 0.90214 0.89554 0.92823 0.93121 0.89483 0.90436 0.93751 0.93595 0.74958 0.73445 0.85961 0.87220 0.97476 0.98318 0.92573 0.85480 0.82218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.70 8.22 71.99 0.59 -1.11 16 2 C -0.07 -1.24 0.71 -52.93 -0.04 -1.28 16 3 C -0.13 -1.84 8.23 71.98 0.59 -1.25 16 4 C 0.10 1.79 5.20 71.98 0.37 2.17 16 5 O -0.57 -7.66 12.31 -148.98 -1.83 -9.49 16 6 C 0.52 12.64 6.22 87.66 0.55 13.18 16 7 O -0.56 -18.69 13.67 -3.05 -0.04 -18.73 16 8 N -0.65 -14.43 5.12 -303.50 -1.55 -15.99 16 9 C 0.12 3.65 6.28 38.15 0.24 3.89 16 10 C -0.12 -4.59 8.66 22.39 0.19 -4.40 16 11 C -0.12 -5.14 9.69 22.25 0.22 -4.93 16 12 C -0.07 -3.34 5.07 -19.84 -0.10 -3.44 16 13 C 0.06 3.13 5.10 29.10 0.15 3.28 16 14 C -0.53 -30.52 9.09 25.60 0.23 -30.28 16 15 H 0.06 3.18 7.74 -2.91 -0.02 3.15 16 16 C 0.00 0.16 5.46 84.65 0.46 0.62 16 17 N -0.93 -56.83 13.29 21.45 0.28 -56.55 16 18 Si 0.97 44.56 29.54 68.60 2.03 46.58 16 19 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 22 C -0.11 -4.28 9.69 22.25 0.22 -4.06 16 23 C -0.13 -3.77 9.96 22.39 0.22 -3.55 16 24 H 0.08 0.69 7.45 -2.39 -0.02 0.67 16 25 H 0.09 1.00 7.68 -2.39 -0.02 0.99 16 26 H 0.05 0.77 8.14 -2.39 -0.02 0.75 16 27 H 0.05 0.81 8.14 -2.39 -0.02 0.79 16 28 H 0.09 1.08 7.68 -2.39 -0.02 1.06 16 29 H 0.08 0.80 7.69 -2.38 -0.02 0.78 16 30 H 0.04 0.86 8.10 -2.39 -0.02 0.84 16 31 H 0.05 0.88 8.10 -2.39 -0.02 0.86 16 32 H 0.40 2.09 9.12 -74.06 -0.68 1.42 16 33 H 0.43 5.98 7.68 -92.71 -0.71 5.27 16 34 H 0.12 4.52 6.41 -2.91 -0.02 4.50 16 35 H 0.11 4.75 8.06 -2.91 -0.02 4.73 16 36 H 0.01 0.40 8.08 -2.39 -0.02 0.38 16 37 H 0.00 -0.09 8.08 -2.39 -0.02 -0.11 16 38 H 0.27 15.15 8.31 -92.71 -0.77 14.38 16 39 H 0.13 4.62 8.06 -2.91 -0.02 4.60 16 40 H 0.16 3.32 8.06 -2.91 -0.02 3.29 16 Total: -1.00 -73.62 335.42 2.44 -71.18 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: -0.34 Total: 14.15 kcal Atomic # 6 Polarization: -35.06 SS G_CDS: 3.90 Total: -31.16 kcal Atomic # 7 Polarization: -71.26 SS G_CDS: -1.27 Total: -72.53 kcal Atomic # 8 Polarization: -26.34 SS G_CDS: -1.88 Total: -28.22 kcal Atomic # 14 Polarization: 44.56 SS G_CDS: 2.03 Total: 46.58 kcal Total: -73.62 2.44 -71.18 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928401118.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.736 kcal (2) G-P(sol) polarization free energy of solvation -73.621 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -103.358 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.441 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.180 kcal (6) G-S(sol) free energy of system = (1) + (5) -100.917 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds