Wall clock time and date at job start Mon Mar 30 2020 02:48:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42902 * 113.99831 * 2 1 4 4 C 1.53009 * 109.46799 * 60.00459 * 3 2 1 5 5 C 1.53003 * 109.47264 * 300.00573 * 3 2 1 6 6 C 1.50695 * 109.47090 * 180.02562 * 3 2 1 7 7 O 1.21288 * 119.99814 * 359.97438 * 6 3 2 8 8 N 1.34778 * 119.99838 * 180.02562 * 6 3 2 9 9 C 1.39927 * 119.99585 * 185.27077 * 8 6 3 10 10 C 1.38874 * 120.07215 * 33.29114 * 9 8 6 11 11 C 1.38112 * 119.93099 * 180.02562 * 10 9 8 12 12 C 1.38283 * 120.07013 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.92860 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46706 * 90.00245 * 13 12 11 15 15 H 1.07999 * 120.00604 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99849 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00008 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00113 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47232 * 59.99702 * 18 16 14 20 20 H 1.48498 * 109.47233 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46963 * 299.99825 * 18 16 14 22 22 C 1.38286 * 120.13828 * 0.25319 * 12 11 10 23 23 C 1.38105 * 120.07308 * 359.48773 * 22 12 11 24 24 H 1.08998 * 109.47022 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 299.99630 * 1 2 3 26 26 H 1.08991 * 109.47208 * 59.99320 * 1 2 3 27 27 H 1.09001 * 109.46534 * 179.97438 * 4 3 2 28 28 H 1.08998 * 109.46720 * 299.99483 * 4 3 2 29 29 H 1.08995 * 109.46949 * 60.00133 * 4 3 2 30 30 H 1.08998 * 109.47110 * 299.99977 * 5 3 2 31 31 H 1.08997 * 109.47261 * 60.00166 * 5 3 2 32 32 H 1.09005 * 109.46583 * 179.97438 * 5 3 2 33 33 H 0.96994 * 120.00037 * 5.27153 * 8 6 3 34 34 H 1.08001 * 120.03469 * 359.97438 * 10 9 8 35 35 H 1.07997 * 119.96629 * 179.97438 * 11 10 9 36 36 H 1.09001 * 109.47113 * 210.00070 * 13 12 11 37 37 H 1.08995 * 109.47338 * 330.00260 * 13 12 11 38 38 H 0.96996 * 119.99982 * 180.02562 * 17 16 14 39 39 H 1.08002 * 119.95762 * 179.74594 * 22 12 11 40 40 H 1.08004 * 120.04052 * 180.25141 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5588 2.0647 1.2494 5 6 1.5587 2.0648 -1.2492 6 6 3.5125 1.1865 -0.0006 7 8 4.0341 0.0915 -0.0006 8 7 4.2764 2.2969 -0.0002 9 6 5.6671 2.1894 -0.1121 10 6 6.2274 1.1705 -0.8714 11 6 7.6003 1.0667 -0.9794 12 6 8.4169 1.9758 -0.3321 13 6 9.9147 1.8593 -0.4517 14 6 10.3876 2.6600 -1.6375 15 1 9.6750 3.1990 -2.2442 16 6 11.7301 2.7037 -1.9487 17 7 12.5980 2.0470 -1.2103 18 14 12.3164 3.6956 -3.4190 19 1 11.9443 5.1213 -3.2344 20 1 13.7922 3.5809 -3.5368 21 1 11.6786 3.1736 -4.6543 22 6 7.8622 2.9881 0.4293 23 6 6.4900 3.1005 0.5370 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8898 27 1 2.0025 3.0603 1.2496 28 1 0.4722 2.1507 1.2493 29 1 1.8806 1.5237 2.1393 30 1 1.8803 1.5240 -2.1392 31 1 0.4721 2.1509 -1.2491 32 1 2.0017 3.0608 -1.2488 33 1 3.8622 3.1705 0.0777 34 1 5.5902 0.4594 -1.3761 35 1 8.0367 0.2743 -1.5693 36 1 10.3825 2.2423 0.4552 37 1 10.1880 0.8130 -0.5875 38 1 13.5425 2.0780 -1.4290 39 1 8.5028 3.6941 0.9370 40 1 6.0572 3.8938 1.1286 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000928403428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:36 Heat of formation + Delta-G solvation = -60.573050 kcal Electronic energy + Delta-G solvation = -21028.527793 eV Core-core repulsion = 17808.282807 eV Total energy + Delta-G solvation = -3220.244986 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -40.76812 -38.91462 -37.63354 -34.97563 -33.38657 -32.60162 -30.32832 -30.24063 -27.93476 -27.55256 -26.64803 -23.91614 -22.59021 -22.28973 -20.52029 -19.70728 -18.17240 -16.96143 -16.40138 -16.24848 -15.79537 -15.29514 -15.00899 -14.89837 -14.24037 -14.04846 -13.94457 -13.23874 -13.22534 -12.91000 -12.80095 -12.66979 -12.54722 -12.48636 -12.00556 -11.83532 -11.44151 -11.34655 -11.24630 -10.78333 -10.60107 -10.34680 -10.01549 -9.99658 -9.75261 -9.39090 -9.25299 -8.40405 -8.28392 -7.38115 -6.01829 -4.06024 1.83441 2.06497 2.63939 2.72863 3.33091 3.37252 3.40306 3.66558 4.24343 4.36644 4.42105 4.49593 4.59334 4.91374 4.93465 5.04669 5.07373 5.23610 5.31100 5.32362 5.36228 5.43569 5.57430 5.60046 5.73188 5.93576 6.04909 6.11483 6.20624 6.65020 6.66434 6.83166 6.91483 7.17275 7.21917 7.48235 7.53303 7.71549 7.88373 7.93773 8.15459 8.34332 8.99070 9.57524 11.07770 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039920 B = 0.003170 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.237589 B = 8831.128001 C = 8867.212247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.354 6.354 3 C 0.098 3.902 4 C -0.179 4.179 5 C -0.178 4.178 6 C 0.521 3.479 7 O -0.497 6.497 8 N -0.664 5.664 9 C 0.105 3.895 10 C -0.117 4.117 11 C -0.107 4.107 12 C -0.041 4.041 13 C 0.048 3.952 14 C -0.512 4.512 15 H 0.057 0.943 16 C 0.058 3.942 17 N -0.894 5.894 18 Si 0.896 3.104 19 H -0.276 1.276 20 H -0.287 1.287 21 H -0.276 1.276 22 C -0.108 4.108 23 C -0.142 4.142 24 H 0.090 0.910 25 H 0.046 0.954 26 H 0.046 0.954 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.073 0.927 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.404 0.596 34 H 0.123 0.877 35 H 0.122 0.878 36 H 0.029 0.971 37 H 0.029 0.971 38 H 0.262 0.738 39 H 0.122 0.878 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.772 2.620 3.425 25.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.272 6.272 3 C 0.055 3.945 4 C -0.236 4.236 5 C -0.236 4.236 6 C 0.306 3.694 7 O -0.369 6.369 8 N -0.311 5.311 9 C 0.013 3.987 10 C -0.137 4.137 11 C -0.126 4.126 12 C -0.042 4.042 13 C 0.011 3.989 14 C -0.550 4.550 15 H 0.075 0.925 16 C -0.144 4.144 17 N -0.533 5.533 18 Si 0.723 3.277 19 H -0.202 1.202 20 H -0.213 1.213 21 H -0.202 1.202 22 C -0.127 4.127 23 C -0.163 4.163 24 H 0.108 0.892 25 H 0.064 0.936 26 H 0.065 0.935 27 H 0.092 0.908 28 H 0.092 0.908 29 H 0.092 0.908 30 H 0.092 0.908 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.239 0.761 34 H 0.141 0.859 35 H 0.140 0.860 36 H 0.047 0.953 37 H 0.047 0.953 38 H 0.072 0.928 39 H 0.140 0.860 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -24.146 1.578 3.430 24.440 hybrid contribution -0.089 1.248 -0.764 1.466 sum -24.236 2.827 2.666 24.545 Atomic orbital electron populations 1.22892 0.80958 1.03221 1.00251 1.88119 1.19526 1.24612 1.94977 1.21321 0.91193 0.85482 0.96483 1.22438 1.02799 1.00828 0.97558 1.22428 1.02708 1.00935 0.97502 1.20031 0.87901 0.84598 0.76831 1.90759 1.73985 1.26312 1.45880 1.43270 1.05421 1.09007 1.73371 1.17488 0.81042 0.99568 1.00588 1.20996 0.95418 0.98461 0.98830 1.21003 0.92078 0.99700 0.99785 1.20721 0.99026 0.92130 0.92295 1.18349 0.84626 0.98159 0.97763 1.21031 0.92176 1.30061 1.11738 0.92509 1.25018 0.96808 0.95727 0.96802 1.69949 1.02315 1.42088 1.38977 0.86595 0.77477 0.80582 0.83010 1.20202 1.21255 1.20167 1.20885 0.93263 0.98660 0.99849 1.20725 0.93809 1.00445 1.01285 0.89157 0.93566 0.93542 0.90762 0.90758 0.90824 0.90802 0.90792 0.90670 0.76091 0.85891 0.86020 0.95298 0.95268 0.92788 0.85957 0.86780 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.17 10.21 101.05 1.03 1.20 16 2 O -0.35 -4.26 9.88 -55.14 -0.54 -4.80 16 3 C 0.10 1.00 0.98 -91.77 -0.09 0.91 16 4 C -0.18 -1.28 8.15 37.16 0.30 -0.98 16 5 C -0.18 -1.34 8.15 37.16 0.30 -1.03 16 6 C 0.52 7.37 6.30 -10.99 -0.07 7.30 16 7 O -0.50 -9.43 14.19 -14.36 -0.20 -9.64 16 8 N -0.66 -8.46 5.12 -9.86 -0.05 -8.51 16 9 C 0.11 1.75 6.28 -83.69 -0.53 1.23 16 10 C -0.12 -2.23 8.66 -39.39 -0.34 -2.57 16 11 C -0.11 -2.23 9.69 -39.61 -0.38 -2.61 16 12 C -0.04 -0.91 5.07 -104.59 -0.53 -1.44 16 13 C 0.05 1.25 5.10 -29.04 -0.15 1.10 16 14 C -0.51 -14.40 9.09 -34.44 -0.31 -14.71 16 15 H 0.06 1.58 7.74 -52.49 -0.41 1.17 16 16 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 17 N -0.89 -26.60 13.29 55.43 0.74 -25.86 16 18 Si 0.90 21.60 29.54 -169.99 -5.02 16.58 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 21 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 22 C -0.11 -2.09 9.69 -39.61 -0.38 -2.47 16 23 C -0.14 -2.32 9.96 -39.39 -0.39 -2.72 16 24 H 0.09 0.57 8.14 -51.93 -0.42 0.15 16 25 H 0.05 0.26 6.42 -51.93 -0.33 -0.07 16 26 H 0.05 0.27 6.42 -51.93 -0.33 -0.07 16 27 H 0.07 0.40 7.45 -51.93 -0.39 0.01 16 28 H 0.07 0.39 6.54 -51.93 -0.34 0.05 16 29 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.40 6.54 -51.93 -0.34 0.06 16 32 H 0.07 0.44 7.69 -51.93 -0.40 0.04 16 33 H 0.40 3.55 7.68 -40.82 -0.31 3.23 16 34 H 0.12 2.34 6.42 -52.49 -0.34 2.01 16 35 H 0.12 2.49 8.06 -52.49 -0.42 2.06 16 36 H 0.03 0.78 8.08 -51.93 -0.42 0.36 16 37 H 0.03 0.80 8.08 -51.93 -0.42 0.38 16 38 H 0.26 7.38 8.31 -40.82 -0.34 7.04 16 39 H 0.12 2.25 8.06 -52.49 -0.42 1.83 16 40 H 0.11 1.46 8.06 -52.48 -0.42 1.04 16 LS Contribution 332.09 15.07 5.00 5.00 Total: -1.00 -34.07 332.09 -7.42 -41.48 By element: Atomic # 1 Polarization: 6.70 SS G_CDS: -5.70 Total: 1.00 kcal Atomic # 6 Polarization: -13.61 SS G_CDS: -1.64 Total: -15.25 kcal Atomic # 7 Polarization: -35.06 SS G_CDS: 0.69 Total: -34.37 kcal Atomic # 8 Polarization: -13.69 SS G_CDS: -0.75 Total: -14.44 kcal Atomic # 14 Polarization: 21.60 SS G_CDS: -5.02 Total: 16.58 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -34.07 -7.42 -41.48 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928403428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.091 kcal (2) G-P(sol) polarization free energy of solvation -34.066 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.157 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.416 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.482 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.573 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds