Wall clock time and date at job start Mon Mar 30 2020 02:48:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42902 * 113.99831 * 2 1 4 4 C 1.53009 * 109.46799 * 60.00459 * 3 2 1 5 5 C 1.53003 * 109.47264 * 300.00573 * 3 2 1 6 6 C 1.50695 * 109.47090 * 180.02562 * 3 2 1 7 7 O 1.21288 * 119.99814 * 359.97438 * 6 3 2 8 8 N 1.34778 * 119.99838 * 180.02562 * 6 3 2 9 9 C 1.39927 * 119.99585 * 185.27077 * 8 6 3 10 10 C 1.38874 * 120.07215 * 33.29114 * 9 8 6 11 11 C 1.38112 * 119.93099 * 180.02562 * 10 9 8 12 12 C 1.38283 * 120.07013 * 0.02562 * 11 10 9 13 13 C 1.50698 * 119.92860 * 179.97438 * 12 11 10 14 14 C 1.50699 * 109.46706 * 90.00245 * 13 12 11 15 15 H 1.07999 * 120.00604 * 359.97438 * 14 13 12 16 16 C 1.37881 * 119.99849 * 180.02562 * 14 13 12 17 17 N 1.31519 * 120.00008 * 359.97438 * 16 14 13 18 18 Si 1.86798 * 120.00113 * 179.97438 * 16 14 13 19 19 H 1.48498 * 109.47232 * 59.99702 * 18 16 14 20 20 H 1.48498 * 109.47233 * 179.97438 * 18 16 14 21 21 H 1.48503 * 109.46963 * 299.99825 * 18 16 14 22 22 C 1.38286 * 120.13828 * 0.25319 * 12 11 10 23 23 C 1.38105 * 120.07308 * 359.48773 * 22 12 11 24 24 H 1.08998 * 109.47022 * 179.97438 * 1 2 3 25 25 H 1.09001 * 109.46665 * 299.99630 * 1 2 3 26 26 H 1.08991 * 109.47208 * 59.99320 * 1 2 3 27 27 H 1.09001 * 109.46534 * 179.97438 * 4 3 2 28 28 H 1.08998 * 109.46720 * 299.99483 * 4 3 2 29 29 H 1.08995 * 109.46949 * 60.00133 * 4 3 2 30 30 H 1.08998 * 109.47110 * 299.99977 * 5 3 2 31 31 H 1.08997 * 109.47261 * 60.00166 * 5 3 2 32 32 H 1.09005 * 109.46583 * 179.97438 * 5 3 2 33 33 H 0.96994 * 120.00037 * 5.27153 * 8 6 3 34 34 H 1.08001 * 120.03469 * 359.97438 * 10 9 8 35 35 H 1.07997 * 119.96629 * 179.97438 * 11 10 9 36 36 H 1.09001 * 109.47113 * 210.00070 * 13 12 11 37 37 H 1.08995 * 109.47338 * 330.00260 * 13 12 11 38 38 H 0.96996 * 119.99982 * 180.02562 * 17 16 14 39 39 H 1.08002 * 119.95762 * 179.74594 * 22 12 11 40 40 H 1.08004 * 120.04052 * 180.25141 * 23 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0103 1.3055 0.0000 4 6 1.5588 2.0647 1.2494 5 6 1.5587 2.0648 -1.2492 6 6 3.5125 1.1865 -0.0006 7 8 4.0341 0.0915 -0.0006 8 7 4.2764 2.2969 -0.0002 9 6 5.6671 2.1894 -0.1121 10 6 6.2274 1.1705 -0.8714 11 6 7.6003 1.0667 -0.9794 12 6 8.4169 1.9758 -0.3321 13 6 9.9147 1.8593 -0.4517 14 6 10.3876 2.6600 -1.6375 15 1 9.6750 3.1990 -2.2442 16 6 11.7301 2.7037 -1.9487 17 7 12.5980 2.0470 -1.2103 18 14 12.3164 3.6956 -3.4190 19 1 11.9443 5.1213 -3.2344 20 1 13.7922 3.5809 -3.5368 21 1 11.6786 3.1736 -4.6543 22 6 7.8622 2.9881 0.4293 23 6 6.4900 3.1005 0.5370 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5138 0.8901 26 1 -0.3633 0.5139 -0.8898 27 1 2.0025 3.0603 1.2496 28 1 0.4722 2.1507 1.2493 29 1 1.8806 1.5237 2.1393 30 1 1.8803 1.5240 -2.1392 31 1 0.4721 2.1509 -1.2491 32 1 2.0017 3.0608 -1.2488 33 1 3.8622 3.1705 0.0777 34 1 5.5902 0.4594 -1.3761 35 1 8.0367 0.2743 -1.5693 36 1 10.3825 2.2423 0.4552 37 1 10.1880 0.8130 -0.5875 38 1 13.5425 2.0780 -1.4290 39 1 8.5028 3.6941 0.9370 40 1 6.0572 3.8938 1.1286 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000928403428.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:35 Heat of formation + Delta-G solvation = -82.488328 kcal Electronic energy + Delta-G solvation = -21029.478111 eV Core-core repulsion = 17808.282807 eV Total energy + Delta-G solvation = -3221.195304 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.86400 -40.09485 -38.78500 -36.36519 -35.10910 -33.76251 -31.92991 -31.80096 -28.53080 -28.45723 -28.04813 -25.49428 -24.06871 -23.63312 -21.97013 -20.82797 -19.23649 -18.49831 -18.02689 -17.30962 -16.80695 -16.64990 -16.23013 -15.95544 -15.92080 -15.34387 -14.77513 -14.55333 -14.50137 -14.31609 -13.96833 -13.67117 -13.61556 -13.30970 -13.24319 -13.17135 -12.97155 -12.60093 -12.46163 -12.41882 -12.11867 -11.97743 -11.66240 -11.51143 -11.08725 -10.67700 -10.66483 -10.59201 -9.78815 -8.90621 -8.17905 -6.32789 0.39191 0.54712 1.40204 1.43622 1.50512 1.52809 1.71760 2.40730 2.94088 2.98199 3.11463 3.45349 3.68532 3.86307 4.04051 4.12238 4.36594 4.40876 4.48145 4.55975 4.58178 4.60567 4.63049 4.69781 4.74931 4.79235 4.85754 5.09728 5.11875 5.20470 5.30331 5.32775 5.39940 5.44988 5.58160 5.75478 6.05035 6.07623 6.12612 6.24207 6.44073 6.79792 7.08826 7.35693 8.90238 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.039920 B = 0.003170 C = 0.003157 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 701.237589 B = 8831.128001 C = 8867.212247 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 O -0.397 6.397 3 C 0.101 3.899 4 C -0.176 4.176 5 C -0.175 4.175 6 C 0.515 3.485 7 O -0.554 6.554 8 N -0.647 5.647 9 C 0.119 3.881 10 C -0.126 4.126 11 C -0.121 4.121 12 C -0.073 4.073 13 C 0.057 3.943 14 C -0.529 4.529 15 H 0.057 0.943 16 C 0.003 3.997 17 N -0.932 5.932 18 Si 0.967 3.033 19 H -0.264 1.264 20 H -0.281 1.281 21 H -0.270 1.270 22 C -0.112 4.112 23 C -0.124 4.124 24 H 0.092 0.908 25 H 0.065 0.935 26 H 0.063 0.937 27 H 0.098 0.902 28 H 0.100 0.900 29 H 0.057 0.943 30 H 0.053 0.947 31 H 0.100 0.900 32 H 0.096 0.904 33 H 0.428 0.572 34 H 0.118 0.882 35 H 0.108 0.892 36 H 0.008 0.992 37 H -0.003 1.003 38 H 0.266 0.734 39 H 0.129 0.871 40 H 0.164 0.836 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.820 5.474 3.378 28.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 O -0.316 6.316 3 C 0.058 3.942 4 C -0.233 4.233 5 C -0.233 4.233 6 C 0.303 3.697 7 O -0.430 6.430 8 N -0.295 5.295 9 C 0.026 3.974 10 C -0.146 4.146 11 C -0.140 4.140 12 C -0.073 4.073 13 C 0.020 3.980 14 C -0.567 4.567 15 H 0.075 0.925 16 C -0.195 4.195 17 N -0.572 5.572 18 Si 0.791 3.209 19 H -0.188 1.188 20 H -0.206 1.206 21 H -0.195 1.195 22 C -0.130 4.130 23 C -0.143 4.143 24 H 0.110 0.890 25 H 0.083 0.917 26 H 0.082 0.918 27 H 0.117 0.883 28 H 0.118 0.882 29 H 0.076 0.924 30 H 0.072 0.928 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.268 0.732 34 H 0.136 0.864 35 H 0.126 0.874 36 H 0.026 0.974 37 H 0.016 0.984 38 H 0.074 0.926 39 H 0.147 0.853 40 H 0.182 0.818 Dipole moment (debyes) X Y Z Total from point charges -27.245 4.477 3.389 27.818 hybrid contribution 0.730 0.297 -0.696 1.051 sum -26.515 4.774 2.693 27.076 Atomic orbital electron populations 1.23118 0.78681 1.04095 1.01969 1.88061 1.22089 1.26106 1.95390 1.21419 0.87784 0.85678 0.99283 1.22474 1.04658 1.01165 0.94982 1.22463 1.04595 1.01127 0.95092 1.21015 0.89968 0.83760 0.74942 1.90740 1.75366 1.28530 1.48346 1.43157 1.03644 1.10259 1.72436 1.17579 0.83166 0.98083 0.98601 1.20974 0.94364 0.99506 0.99773 1.20901 0.93085 0.99607 1.00361 1.20410 0.96703 0.94734 0.95479 1.18088 0.87776 0.95760 0.96356 1.21365 0.92634 1.30264 1.12398 0.92511 1.25967 0.96907 0.96785 0.99877 1.70084 1.02702 1.43508 1.40872 0.85466 0.77029 0.79314 0.79051 1.18841 1.20646 1.19484 1.21008 0.95047 0.97785 0.99200 1.21054 0.92198 1.00855 1.00233 0.88967 0.91656 0.91829 0.88313 0.88158 0.92429 0.92752 0.88092 0.88544 0.73199 0.86444 0.87360 0.97377 0.98434 0.92569 0.85261 0.81829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.20 10.21 113.37 1.16 1.36 16 2 O -0.40 -9.03 9.88 -129.94 -1.28 -10.32 16 3 C 0.10 1.79 0.98 -11.54 -0.01 1.78 16 4 C -0.18 -1.82 8.15 71.99 0.59 -1.24 16 5 C -0.18 -2.01 8.15 71.98 0.59 -1.43 16 6 C 0.52 13.83 6.30 87.66 0.55 14.38 16 7 O -0.55 -21.29 14.19 15.99 0.23 -21.06 16 8 N -0.65 -14.58 5.12 -303.50 -1.55 -16.14 16 9 C 0.12 3.75 6.28 38.15 0.24 3.99 16 10 C -0.13 -4.86 8.66 22.39 0.19 -4.67 16 11 C -0.12 -5.29 9.69 22.25 0.22 -5.07 16 12 C -0.07 -3.34 5.07 -19.84 -0.10 -3.44 16 13 C 0.06 3.16 5.10 29.10 0.15 3.31 16 14 C -0.53 -30.71 9.09 25.60 0.23 -30.47 16 15 H 0.06 3.22 7.74 -2.91 -0.02 3.19 16 16 C 0.00 0.15 5.46 84.65 0.46 0.61 16 17 N -0.93 -57.12 13.29 21.45 0.28 -56.84 16 18 Si 0.97 44.65 29.54 68.60 2.03 46.67 16 19 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 20 H -0.28 -12.62 7.11 99.48 0.71 -11.91 16 21 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 22 C -0.11 -4.25 9.69 22.25 0.22 -4.03 16 23 C -0.12 -3.66 9.96 22.39 0.22 -3.44 16 24 H 0.09 1.03 8.14 -2.39 -0.02 1.02 16 25 H 0.06 0.52 6.42 -2.39 -0.02 0.50 16 26 H 0.06 0.53 6.42 -2.39 -0.02 0.51 16 27 H 0.10 0.52 7.45 -2.39 -0.02 0.51 16 28 H 0.10 0.55 6.54 -2.39 -0.02 0.53 16 29 H 0.06 0.81 8.14 -2.39 -0.02 0.79 16 30 H 0.05 0.86 8.14 -2.39 -0.02 0.84 16 31 H 0.10 0.63 6.54 -2.39 -0.02 0.62 16 32 H 0.10 0.68 7.69 -2.38 -0.02 0.66 16 33 H 0.43 5.47 7.68 -92.71 -0.71 4.76 16 34 H 0.12 4.65 6.42 -2.91 -0.02 4.63 16 35 H 0.11 4.84 8.06 -2.91 -0.02 4.81 16 36 H 0.01 0.46 8.08 -2.39 -0.02 0.44 16 37 H 0.00 -0.16 8.08 -2.39 -0.02 -0.18 16 38 H 0.27 15.26 8.31 -92.71 -0.77 14.49 16 39 H 0.13 4.67 8.06 -2.91 -0.02 4.64 16 40 H 0.16 3.26 8.06 -2.91 -0.02 3.24 16 Total: -1.00 -78.94 332.09 4.73 -74.20 By element: Atomic # 1 Polarization: 11.52 SS G_CDS: 0.33 Total: 11.85 kcal Atomic # 6 Polarization: -33.08 SS G_CDS: 4.70 Total: -28.37 kcal Atomic # 7 Polarization: -71.70 SS G_CDS: -1.27 Total: -72.97 kcal Atomic # 8 Polarization: -30.32 SS G_CDS: -1.06 Total: -31.38 kcal Atomic # 14 Polarization: 44.65 SS G_CDS: 2.03 Total: 46.67 kcal Total: -78.94 4.73 -74.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000928403428.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.285 kcal (2) G-P(sol) polarization free energy of solvation -78.937 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -87.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.734 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds