Wall clock time and date at job start Mon Mar 30 2020 01:57:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47629 * 2 1 4 4 O 1.42901 * 109.46817 * 240.00040 * 2 1 3 5 5 C 1.52999 * 109.47064 * 120.00602 * 2 1 3 6 6 N 1.46495 * 109.47243 * 184.99844 * 5 2 1 7 7 C 1.34778 * 120.00321 * 179.97438 * 6 5 2 8 8 O 1.21279 * 119.99767 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00150 * 179.97438 * 7 6 5 10 10 H 1.08999 * 109.47276 * 60.00374 * 9 7 6 11 11 C 1.50701 * 109.47254 * 300.00433 * 9 7 6 12 12 H 1.07998 * 119.99934 * 124.62155 * 11 9 7 13 13 C 1.37879 * 120.00066 * 304.34159 * 11 9 7 14 14 N 1.31521 * 120.00057 * 6.38614 * 13 11 9 15 15 Si 1.86795 * 120.00243 * 186.38187 * 13 11 9 16 16 H 1.48502 * 109.47294 * 60.00126 * 15 13 11 17 17 H 1.48498 * 109.47568 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47204 * 300.00545 * 15 13 11 19 19 C 1.50697 * 109.47039 * 180.02562 * 9 7 6 20 20 C 1.38237 * 120.00283 * 313.11562 * 19 9 7 21 21 C 1.38232 * 120.00497 * 179.81076 * 20 19 9 22 22 C 1.38237 * 119.99539 * 0.39808 * 21 20 19 23 23 C 1.38230 * 120.00431 * 359.85241 * 22 21 20 24 24 C 1.38237 * 120.00167 * 133.38639 * 19 9 7 25 25 H 1.08995 * 109.47135 * 300.00017 * 1 2 3 26 26 H 1.08999 * 109.46621 * 60.00011 * 1 2 3 27 27 H 1.09002 * 109.46877 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47660 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46995 * 300.00421 * 3 2 1 30 30 H 1.09005 * 109.46800 * 59.99744 * 3 2 1 31 31 H 0.96698 * 114.00417 * 60.00916 * 4 2 1 32 32 H 1.08999 * 109.47438 * 64.99378 * 5 2 1 33 33 H 1.09008 * 109.46849 * 304.99448 * 5 2 1 34 34 H 0.97009 * 120.00194 * 359.97438 * 6 5 2 35 35 H 0.96991 * 120.00161 * 179.97438 * 14 13 11 36 36 H 1.08010 * 119.99544 * 359.97438 * 20 19 9 37 37 H 1.08001 * 120.00303 * 180.22770 * 21 20 19 38 38 H 1.08005 * 119.99967 * 179.83335 * 22 21 20 39 39 H 1.08006 * 120.00374 * 179.97438 * 23 22 21 40 40 H 1.08004 * 120.00196 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7214 1.2492 6 7 3.5000 -0.6181 1.3109 7 6 4.1730 -1.1829 2.3329 8 8 3.5699 -1.7771 3.2013 9 6 5.6749 -1.0771 2.3961 10 1 5.9637 -0.0269 2.4392 11 6 6.2754 -1.7132 1.1690 12 1 6.9452 -1.1461 0.5396 13 6 5.9742 -3.0211 0.8529 14 7 5.0682 -3.6737 1.5479 15 14 6.8529 -3.8661 -0.5624 16 1 8.3135 -3.8889 -0.2953 17 1 6.3519 -5.2577 -0.6960 18 1 6.5915 -3.1234 -1.8215 19 6 6.1772 -1.7875 3.6265 20 6 5.5677 -1.5694 4.8479 21 6 6.0259 -2.2240 5.9759 22 6 7.0990 -3.0906 5.8840 23 6 7.7119 -3.3048 4.6637 24 6 7.2511 -2.6531 3.5349 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 1.7211 -0.2701 -1.9980 32 1 1.7516 -1.7716 1.2055 33 1 1.6054 -0.2618 2.1370 34 1 3.9825 -0.1431 0.6161 35 1 4.8560 -4.5935 1.3254 36 1 4.7316 -0.8894 4.9204 37 1 5.5473 -2.0563 6.9294 38 1 7.4588 -3.6000 6.7657 39 1 8.5506 -3.9815 4.5919 40 1 7.7300 -2.8206 2.5814 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136986471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:29 Heat of formation + Delta-G solvation = -68.922833 kcal Electronic energy + Delta-G solvation = -22294.163134 eV Core-core repulsion = 19073.556074 eV Total energy + Delta-G solvation = -3220.607060 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -39.06575 -38.21405 -36.99555 -33.57916 -33.43287 -31.45226 -30.75155 -29.65586 -27.52057 -27.34572 -25.52067 -23.64692 -21.23713 -20.60999 -20.09169 -19.03194 -16.77423 -16.50051 -16.04001 -15.20744 -15.09716 -14.83856 -14.42003 -14.05833 -13.63536 -13.43312 -13.37129 -13.01623 -12.58926 -12.32970 -12.27218 -12.09609 -11.90553 -11.67458 -11.53597 -11.40691 -11.23448 -10.86315 -10.72919 -10.49755 -10.36998 -9.98937 -9.88696 -9.61237 -9.31442 -8.64604 -8.16827 -7.80446 -7.65903 -7.36248 -6.05873 -4.19555 2.57434 2.62914 3.28385 3.35448 3.35849 4.20325 4.34718 4.39140 4.56511 4.87491 5.02749 5.04805 5.16816 5.24148 5.51953 5.66018 5.75419 5.87846 5.93304 6.00835 6.04004 6.08142 6.23298 6.25342 6.40268 6.46559 6.67447 6.71194 6.86302 6.98497 7.16964 7.24485 7.57175 7.66089 7.70444 7.77596 7.84859 7.86891 8.19665 8.32687 8.73466 8.94918 9.46594 9.85764 10.96086 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016762 B = 0.006855 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.038138 B = 4083.712572 C = 5273.107009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C 0.114 3.886 3 C -0.177 4.177 4 O -0.548 6.548 5 C 0.144 3.856 6 N -0.728 5.728 7 C 0.553 3.447 8 O -0.553 6.553 9 C 0.056 3.944 10 H 0.055 0.945 11 C -0.543 4.543 12 H 0.065 0.935 13 C 0.079 3.921 14 N -0.840 5.840 15 Si 0.886 3.114 16 H -0.275 1.275 17 H -0.288 1.288 18 H -0.275 1.275 19 C -0.015 4.015 20 C -0.099 4.099 21 C -0.143 4.143 22 C -0.146 4.146 23 C -0.147 4.147 24 C -0.074 4.074 25 H 0.066 0.934 26 H 0.057 0.943 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.055 0.945 30 H 0.065 0.935 31 H 0.368 0.632 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.397 0.603 35 H 0.265 0.735 36 H 0.108 0.892 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.102 0.898 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.501 8.267 -1.928 9.608 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.233 4.233 2 C 0.073 3.927 3 C -0.235 4.235 4 O -0.352 6.352 5 C 0.019 3.981 6 N -0.381 5.381 7 C 0.342 3.658 8 O -0.430 6.430 9 C 0.035 3.965 10 H 0.073 0.927 11 C -0.580 4.580 12 H 0.083 0.917 13 C -0.130 4.130 14 N -0.473 5.473 15 Si 0.714 3.286 16 H -0.200 1.200 17 H -0.214 1.214 18 H -0.201 1.201 19 C -0.016 4.016 20 C -0.117 4.117 21 C -0.162 4.162 22 C -0.164 4.164 23 C -0.165 4.165 24 C -0.091 4.091 25 H 0.085 0.915 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.088 0.912 29 H 0.074 0.926 30 H 0.084 0.916 31 H 0.214 0.786 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.231 0.769 35 H 0.075 0.925 36 H 0.126 0.874 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.120 0.880 40 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -4.783 7.238 -0.798 8.712 hybrid contribution 0.148 -0.292 -1.627 1.660 sum -4.635 6.946 -2.425 8.696 Atomic orbital electron populations 1.22426 0.95620 1.02919 1.02303 1.21479 0.92567 0.91629 0.86992 1.22477 1.02842 0.96067 1.02070 1.86765 1.76897 1.56488 1.15068 1.20983 0.83341 1.00320 0.93484 1.45686 1.05076 1.59222 1.28114 1.20908 0.90351 0.75190 0.79320 1.90512 1.70690 1.41519 1.40327 1.17864 0.89260 0.95731 0.93624 0.92716 1.20617 1.30691 0.97594 1.09112 0.91694 1.25018 0.94470 0.97502 0.95978 1.70013 1.28098 1.11106 1.38060 0.86739 0.80091 0.78812 0.82983 1.20045 1.21353 1.20068 1.19893 0.93214 0.95121 0.93361 1.20993 0.98105 1.00082 0.92532 1.20835 0.98001 0.99537 0.97795 1.20774 0.98116 1.00517 0.96975 1.20999 1.00716 1.01307 0.93525 1.21198 0.96192 0.94224 0.97533 0.91524 0.92347 0.91610 0.91186 0.92632 0.91595 0.78576 0.91852 0.91808 0.76891 0.92491 0.87389 0.88073 0.88189 0.88004 0.85400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.91 8.82 37.16 0.33 -1.58 16 2 C 0.11 1.56 1.07 -90.62 -0.10 1.46 16 3 C -0.18 -2.03 8.59 37.15 0.32 -1.71 16 4 O -0.55 -8.22 12.92 -35.23 -0.46 -8.67 16 5 C 0.14 2.61 4.84 -4.04 -0.02 2.59 16 6 N -0.73 -15.08 5.09 -60.30 -0.31 -15.38 16 7 C 0.55 13.50 5.28 -10.99 -0.06 13.44 16 8 O -0.55 -15.13 13.86 5.56 0.08 -15.06 16 9 C 0.06 1.36 2.78 -94.08 -0.26 1.10 16 10 H 0.05 1.21 8.14 -51.93 -0.42 0.79 16 11 C -0.54 -13.67 7.11 -34.44 -0.24 -13.92 16 12 H 0.06 1.59 7.82 -52.49 -0.41 1.17 16 13 C 0.08 2.06 3.90 -17.82 -0.07 1.99 16 14 N -0.84 -23.79 11.11 55.43 0.62 -23.18 16 15 Si 0.89 20.64 29.54 -169.99 -5.02 15.62 16 16 H -0.27 -6.27 7.11 56.52 0.40 -5.87 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 19 C -0.01 -0.36 4.63 -104.62 -0.48 -0.85 16 20 C -0.10 -2.29 8.21 -39.58 -0.32 -2.61 16 21 C -0.14 -2.99 10.05 -39.58 -0.40 -3.39 16 22 C -0.15 -2.93 10.05 -39.58 -0.40 -3.33 16 23 C -0.15 -3.14 10.05 -39.58 -0.40 -3.53 16 24 C -0.07 -1.75 8.46 -39.58 -0.33 -2.09 16 25 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 26 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 28 H 0.07 0.88 6.57 -51.93 -0.34 0.54 16 29 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 31 H 0.37 3.72 9.05 45.56 0.41 4.13 16 32 H 0.06 1.35 8.14 -51.93 -0.42 0.93 16 33 H 0.06 1.10 8.14 -51.92 -0.42 0.68 16 34 H 0.40 7.75 6.87 -40.82 -0.28 7.47 16 35 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 36 H 0.11 2.47 6.99 -52.48 -0.37 2.10 16 37 H 0.10 1.82 8.06 -52.49 -0.42 1.40 16 38 H 0.10 1.70 8.06 -52.48 -0.42 1.27 16 39 H 0.10 1.90 8.06 -52.48 -0.42 1.47 16 40 H 0.13 3.14 6.05 -52.48 -0.32 2.83 16 LS Contribution 328.64 15.07 4.95 4.95 Total: -1.00 -31.79 328.64 -7.67 -39.45 By element: Atomic # 1 Polarization: 19.78 SS G_CDS: -5.09 Total: 14.69 kcal Atomic # 6 Polarization: -9.98 SS G_CDS: -2.44 Total: -12.42 kcal Atomic # 7 Polarization: -38.87 SS G_CDS: 0.31 Total: -38.56 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.38 Total: -23.73 kcal Atomic # 14 Polarization: 20.64 SS G_CDS: -5.02 Total: 15.62 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -31.79 -7.67 -39.45 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136986471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.468 kcal (2) G-P(sol) polarization free energy of solvation -31.786 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -61.253 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.669 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.455 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds