Wall clock time and date at job start Mon Mar 30 2020 01:57:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52994 * 109.47629 * 2 1 4 4 O 1.42901 * 109.46817 * 240.00040 * 2 1 3 5 5 C 1.52999 * 109.47064 * 120.00602 * 2 1 3 6 6 N 1.46495 * 109.47243 * 184.99844 * 5 2 1 7 7 C 1.34778 * 120.00321 * 179.97438 * 6 5 2 8 8 O 1.21279 * 119.99767 * 0.02562 * 7 6 5 9 9 C 1.50697 * 120.00150 * 179.97438 * 7 6 5 10 10 H 1.08999 * 109.47276 * 60.00374 * 9 7 6 11 11 C 1.50701 * 109.47254 * 300.00433 * 9 7 6 12 12 H 1.07998 * 119.99934 * 124.62155 * 11 9 7 13 13 C 1.37879 * 120.00066 * 304.34159 * 11 9 7 14 14 N 1.31521 * 120.00057 * 6.38614 * 13 11 9 15 15 Si 1.86795 * 120.00243 * 186.38187 * 13 11 9 16 16 H 1.48502 * 109.47294 * 60.00126 * 15 13 11 17 17 H 1.48498 * 109.47568 * 180.02562 * 15 13 11 18 18 H 1.48501 * 109.47204 * 300.00545 * 15 13 11 19 19 C 1.50697 * 109.47039 * 180.02562 * 9 7 6 20 20 C 1.38237 * 120.00283 * 313.11562 * 19 9 7 21 21 C 1.38232 * 120.00497 * 179.81076 * 20 19 9 22 22 C 1.38237 * 119.99539 * 0.39808 * 21 20 19 23 23 C 1.38230 * 120.00431 * 359.85241 * 22 21 20 24 24 C 1.38237 * 120.00167 * 133.38639 * 19 9 7 25 25 H 1.08995 * 109.47135 * 300.00017 * 1 2 3 26 26 H 1.08999 * 109.46621 * 60.00011 * 1 2 3 27 27 H 1.09002 * 109.46877 * 179.97438 * 1 2 3 28 28 H 1.08991 * 109.47660 * 179.97438 * 3 2 1 29 29 H 1.09004 * 109.46995 * 300.00421 * 3 2 1 30 30 H 1.09005 * 109.46800 * 59.99744 * 3 2 1 31 31 H 0.96698 * 114.00417 * 60.00916 * 4 2 1 32 32 H 1.08999 * 109.47438 * 64.99378 * 5 2 1 33 33 H 1.09008 * 109.46849 * 304.99448 * 5 2 1 34 34 H 0.97009 * 120.00194 * 359.97438 * 6 5 2 35 35 H 0.96991 * 120.00161 * 179.97438 * 14 13 11 36 36 H 1.08010 * 119.99544 * 359.97438 * 20 19 9 37 37 H 1.08001 * 120.00303 * 180.22770 * 21 20 19 38 38 H 1.08005 * 119.99967 * 179.83335 * 22 21 20 39 39 H 1.08006 * 120.00374 * 179.97438 * 23 22 21 40 40 H 1.08004 * 120.00196 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 8 2.0063 -0.6736 -1.1668 5 6 2.0400 -0.7214 1.2492 6 7 3.5000 -0.6181 1.3109 7 6 4.1730 -1.1829 2.3329 8 8 3.5699 -1.7771 3.2013 9 6 5.6749 -1.0771 2.3961 10 1 5.9637 -0.0269 2.4392 11 6 6.2754 -1.7132 1.1690 12 1 6.9452 -1.1461 0.5396 13 6 5.9742 -3.0211 0.8529 14 7 5.0682 -3.6737 1.5479 15 14 6.8529 -3.8661 -0.5624 16 1 8.3135 -3.8889 -0.2953 17 1 6.3519 -5.2577 -0.6960 18 1 6.5915 -3.1234 -1.8215 19 6 6.1772 -1.7875 3.6265 20 6 5.5677 -1.5694 4.8479 21 6 6.0259 -2.2240 5.9759 22 6 7.0990 -3.0906 5.8840 23 6 7.7119 -3.3048 4.6637 24 6 7.2511 -2.6531 3.5349 25 1 -0.3633 0.5138 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 3.1300 1.4424 0.0005 29 1 1.6768 1.9563 -0.8900 30 1 1.6768 1.9562 0.8900 31 1 1.7211 -0.2701 -1.9980 32 1 1.7516 -1.7716 1.2055 33 1 1.6054 -0.2618 2.1370 34 1 3.9825 -0.1431 0.6161 35 1 4.8560 -4.5935 1.3254 36 1 4.7316 -0.8894 4.9204 37 1 5.5473 -2.0563 6.9294 38 1 7.4588 -3.6000 6.7657 39 1 8.5506 -3.9815 4.5919 40 1 7.7300 -2.8206 2.5814 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136986471.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:28 Heat of formation + Delta-G solvation = -91.177664 kcal Electronic energy + Delta-G solvation = -22295.128176 eV Core-core repulsion = 19073.556074 eV Total energy + Delta-G solvation = -3221.572102 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.77303 -39.61322 -38.61263 -35.45024 -35.04598 -32.79808 -32.56190 -31.37141 -29.25690 -28.25886 -27.09043 -25.49259 -22.96173 -22.24284 -21.39157 -20.83903 -18.65975 -17.72701 -17.55177 -16.96540 -16.80075 -16.62051 -15.83083 -15.72019 -15.36041 -14.89161 -14.70840 -14.43890 -14.14467 -14.00461 -13.82303 -13.63031 -13.25740 -13.02696 -12.99991 -12.69172 -12.63179 -12.57308 -12.52083 -12.25697 -11.77066 -11.67053 -11.42730 -11.17210 -10.94115 -10.65057 -10.09641 -9.57041 -9.39091 -9.10716 -8.08104 -6.24966 0.86750 0.91134 1.42516 1.43817 1.49960 2.35119 2.48500 2.87453 3.20832 3.29693 3.36078 3.81036 3.99781 4.08561 4.33489 4.35625 4.49363 4.58307 4.63257 4.70129 4.73082 4.86055 4.91555 4.94032 5.00675 5.10572 5.13283 5.16367 5.18831 5.39378 5.45214 5.53280 5.70561 5.87992 5.92699 5.97501 6.04199 6.41850 6.51946 6.76919 6.97989 7.15268 7.43507 8.00065 8.92167 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016762 B = 0.006855 C = 0.005309 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1670.038138 B = 4083.712572 C = 5273.107009 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.120 3.880 3 C -0.171 4.171 4 O -0.577 6.577 5 C 0.140 3.860 6 N -0.718 5.718 7 C 0.549 3.451 8 O -0.589 6.589 9 C 0.047 3.953 10 H 0.067 0.933 11 C -0.536 4.536 12 H 0.070 0.930 13 C 0.042 3.958 14 N -0.874 5.874 15 Si 0.939 3.061 16 H -0.265 1.265 17 H -0.298 1.298 18 H -0.269 1.269 19 C -0.039 4.039 20 C -0.117 4.117 21 C -0.145 4.145 22 C -0.141 4.141 23 C -0.151 4.151 24 C -0.097 4.097 25 H 0.077 0.923 26 H 0.088 0.912 27 H 0.050 0.950 28 H 0.054 0.946 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.390 0.610 32 H 0.023 0.977 33 H 0.070 0.930 34 H 0.402 0.598 35 H 0.254 0.746 36 H 0.100 0.900 37 H 0.131 0.869 38 H 0.140 0.860 39 H 0.128 0.872 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.295 9.178 -2.116 10.352 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.079 3.921 3 C -0.228 4.228 4 O -0.385 6.385 5 C 0.016 3.984 6 N -0.370 5.370 7 C 0.339 3.661 8 O -0.470 6.470 9 C 0.025 3.975 10 H 0.085 0.915 11 C -0.574 4.574 12 H 0.089 0.911 13 C -0.163 4.163 14 N -0.508 5.508 15 Si 0.765 3.235 16 H -0.190 1.190 17 H -0.224 1.224 18 H -0.194 1.194 19 C -0.040 4.040 20 C -0.135 4.135 21 C -0.163 4.163 22 C -0.159 4.159 23 C -0.169 4.169 24 C -0.115 4.115 25 H 0.096 0.904 26 H 0.107 0.893 27 H 0.070 0.930 28 H 0.073 0.927 29 H 0.104 0.896 30 H 0.093 0.907 31 H 0.240 0.760 32 H 0.041 0.959 33 H 0.088 0.912 34 H 0.238 0.762 35 H 0.063 0.937 36 H 0.118 0.882 37 H 0.149 0.851 38 H 0.158 0.842 39 H 0.146 0.854 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -4.569 8.197 -1.035 9.441 hybrid contribution 0.095 -0.537 -1.537 1.631 sum -4.475 7.660 -2.572 9.237 Atomic orbital electron populations 1.22374 0.93199 1.02674 1.04359 1.21418 0.94175 0.91895 0.84598 1.22419 1.01834 0.94546 1.04039 1.86695 1.77603 1.57702 1.16509 1.21133 0.81796 0.98718 0.96768 1.45617 1.06327 1.58026 1.27070 1.20979 0.90587 0.74927 0.79624 1.90473 1.71350 1.43290 1.41842 1.17989 0.89289 0.96491 0.93687 0.91482 1.20845 1.29890 0.97533 1.09137 0.91146 1.25572 0.94826 0.98083 0.97773 1.70191 1.30075 1.10640 1.39934 0.85900 0.79559 0.77274 0.80752 1.18970 1.22446 1.19410 1.19990 0.94033 0.96117 0.93825 1.21057 0.98295 1.00994 0.93177 1.21219 0.98053 0.98717 0.98265 1.21200 0.97138 0.99668 0.97863 1.21336 1.01324 1.00967 0.93243 1.21182 0.96796 0.95503 0.97976 0.90406 0.89328 0.93050 0.92704 0.89555 0.90743 0.76039 0.95895 0.91152 0.76223 0.93676 0.88157 0.85075 0.84218 0.85391 0.86984 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.35 8.82 71.98 0.63 -2.72 16 2 C 0.12 3.14 1.07 -10.79 -0.01 3.13 16 3 C -0.17 -3.53 8.59 71.98 0.62 -2.92 16 4 O -0.58 -16.77 12.92 -148.98 -1.93 -18.70 16 5 C 0.14 5.22 4.84 86.38 0.42 5.64 16 6 N -0.72 -30.44 5.09 -463.07 -2.36 -32.80 16 7 C 0.55 27.62 5.28 87.66 0.46 28.08 16 8 O -0.59 -33.44 13.86 -3.02 -0.04 -33.48 16 9 C 0.05 2.30 2.78 -13.03 -0.04 2.27 16 10 H 0.07 3.02 8.14 -2.39 -0.02 3.00 16 11 C -0.54 -27.31 7.11 25.60 0.18 -27.13 16 12 H 0.07 3.43 7.82 -2.91 -0.02 3.41 16 13 C 0.04 2.22 3.90 84.65 0.33 2.55 16 14 N -0.87 -50.89 11.11 21.45 0.24 -50.65 16 15 Si 0.94 42.67 29.54 68.60 2.03 44.69 16 16 H -0.26 -11.51 7.11 99.48 0.71 -10.80 16 17 H -0.30 -13.97 7.11 99.48 0.71 -13.27 16 18 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 19 C -0.04 -1.92 4.63 -19.87 -0.09 -2.01 16 20 C -0.12 -5.45 8.21 22.27 0.18 -5.27 16 21 C -0.14 -5.80 10.05 22.27 0.22 -5.58 16 22 C -0.14 -5.30 10.05 22.27 0.22 -5.08 16 23 C -0.15 -6.20 10.05 22.27 0.22 -5.97 16 24 C -0.10 -4.63 8.46 22.27 0.19 -4.44 16 25 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 26 H 0.09 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 28 H 0.05 1.30 6.57 -2.39 -0.02 1.29 16 29 H 0.09 1.28 8.14 -2.38 -0.02 1.26 16 30 H 0.07 1.42 8.14 -2.38 -0.02 1.40 16 31 H 0.39 7.10 9.05 -74.06 -0.67 6.43 16 32 H 0.02 1.03 8.14 -2.39 -0.02 1.01 16 33 H 0.07 2.49 8.14 -2.38 -0.02 2.47 16 34 H 0.40 15.89 6.87 -92.70 -0.64 15.25 16 35 H 0.25 14.81 8.31 -92.72 -0.77 14.04 16 36 H 0.10 4.71 6.99 -2.91 -0.02 4.69 16 37 H 0.13 4.38 8.06 -2.91 -0.02 4.36 16 38 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 39 H 0.13 4.47 8.06 -2.91 -0.02 4.45 16 40 H 0.11 5.60 6.05 -2.91 -0.02 5.58 16 Total: -1.00 -70.36 328.64 1.23 -69.13 By element: Atomic # 1 Polarization: 41.52 SS G_CDS: -0.26 Total: 41.26 kcal Atomic # 6 Polarization: -23.00 SS G_CDS: 3.55 Total: -19.45 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -2.12 Total: -83.45 kcal Atomic # 8 Polarization: -50.21 SS G_CDS: -1.97 Total: -52.18 kcal Atomic # 14 Polarization: 42.67 SS G_CDS: 2.03 Total: 44.69 kcal Total: -70.36 1.23 -69.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136986471.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.052 kcal (2) G-P(sol) polarization free energy of solvation -70.357 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.231 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.126 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.178 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds