Wall clock time and date at job start Mon Mar 30 2020 01:57:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47162 * 2 1 4 4 O 1.42899 * 109.47420 * 239.99395 * 2 1 3 5 5 C 1.53001 * 109.47214 * 119.99716 * 2 1 3 6 6 N 1.46503 * 109.47307 * 60.00113 * 5 2 1 7 7 C 1.34769 * 120.00380 * 180.02562 * 6 5 2 8 8 O 1.21283 * 120.00035 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00455 * 180.02562 * 7 6 5 10 10 H 1.09000 * 109.47069 * 300.00306 * 9 7 6 11 11 C 1.50702 * 109.47018 * 59.99464 * 9 7 6 12 12 H 1.07997 * 120.00304 * 235.33770 * 11 9 7 13 13 C 1.37879 * 119.99933 * 55.33892 * 11 9 7 14 14 N 1.31516 * 119.99735 * 1.96772 * 13 11 9 15 15 Si 1.86800 * 120.00111 * 181.96427 * 13 11 9 16 16 H 1.48498 * 109.46846 * 90.00198 * 15 13 11 17 17 H 1.48499 * 109.46961 * 209.99878 * 15 13 11 18 18 H 1.48494 * 109.47187 * 329.99881 * 15 13 11 19 19 C 1.50700 * 109.47580 * 179.97438 * 9 7 6 20 20 C 1.38238 * 119.99685 * 47.22350 * 19 9 7 21 21 C 1.38240 * 119.99512 * 180.02562 * 20 19 9 22 22 C 1.38236 * 120.00137 * 359.95537 * 21 20 19 23 23 C 1.38228 * 120.00048 * 359.97438 * 22 21 20 24 24 C 1.38232 * 120.00167 * 227.20237 * 19 9 7 25 25 H 1.09003 * 109.46970 * 299.99904 * 1 2 3 26 26 H 1.08997 * 109.47448 * 60.00408 * 1 2 3 27 27 H 1.09003 * 109.46965 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47127 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46606 * 300.00108 * 3 2 1 30 30 H 1.09000 * 109.47163 * 59.99408 * 3 2 1 31 31 H 0.96692 * 114.00047 * 179.97438 * 4 2 1 32 32 H 1.09006 * 109.47206 * 300.00535 * 5 2 1 33 33 H 1.09001 * 109.47520 * 179.97438 * 5 2 1 34 34 H 0.96999 * 119.99668 * 359.97438 * 6 5 2 35 35 H 0.97003 * 120.00319 * 179.97438 * 14 13 11 36 36 H 1.08000 * 120.00284 * 359.97438 * 20 19 9 37 37 H 1.08001 * 119.99592 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.99403 * 179.72391 * 22 21 20 39 39 H 1.07996 * 120.00078 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00068 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 7 1.5517 -2.1025 1.2494 7 6 1.8769 -2.9321 2.2604 8 8 2.5742 -2.5354 3.1701 9 6 1.3751 -4.3531 2.2603 10 1 0.2851 -4.3535 2.2595 11 6 1.8785 -5.0634 1.0301 12 1 1.1802 -5.5395 0.3577 13 6 3.2305 -5.1055 0.7631 14 7 4.0837 -4.5593 1.6018 15 14 3.8504 -5.9383 -0.7898 16 1 3.9161 -4.9450 -1.8917 17 1 5.2045 -6.4966 -0.5452 18 1 2.9234 -7.0354 -1.1669 19 6 1.8773 -5.0635 3.4908 20 6 1.7729 -4.4582 4.7292 21 6 2.2341 -5.1096 5.8579 22 6 2.7988 -6.3666 5.7483 23 6 2.9019 -6.9724 4.5101 24 6 2.4420 -6.3204 3.3812 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9562 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 2.9703 -0.7116 -1.2330 32 1 1.6766 -0.2074 2.1393 33 1 3.1300 -0.7216 1.2491 34 1 0.9938 -2.4196 0.5221 35 1 5.0349 -4.5892 1.4142 36 1 1.3318 -3.4761 4.8148 37 1 2.1529 -4.6365 6.8254 38 1 3.1632 -6.8735 6.6296 39 1 3.3434 -7.9542 4.4244 40 1 2.5229 -6.7936 2.4138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001136986472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:32 Heat of formation + Delta-G solvation = -71.170131 kcal Electronic energy + Delta-G solvation = -22318.458281 eV Core-core repulsion = 19097.753771 eV Total energy + Delta-G solvation = -3220.704510 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -39.13222 -38.21161 -36.99225 -33.58102 -33.38949 -31.63187 -30.76751 -29.63458 -27.55751 -27.33907 -25.50903 -23.65426 -21.23588 -20.56720 -20.17103 -19.09094 -17.00187 -16.55184 -15.70569 -15.28202 -15.06733 -14.85547 -14.59895 -14.02348 -13.82056 -13.60485 -13.28690 -12.66884 -12.55392 -12.37781 -12.17502 -12.13263 -12.02833 -11.89644 -11.62037 -11.41579 -11.20959 -10.94091 -10.72817 -10.56129 -10.39365 -10.00771 -9.83911 -9.61631 -9.32645 -8.67290 -8.25610 -7.91717 -7.65138 -7.35605 -6.09358 -4.25215 2.58586 2.65220 3.23416 3.32127 3.33311 4.09508 4.26436 4.40640 4.55000 4.91178 5.01260 5.05258 5.13948 5.18900 5.58773 5.70758 5.82411 5.88703 5.90344 6.00791 6.07233 6.08279 6.12994 6.19891 6.36401 6.44165 6.63494 6.71517 6.85368 6.95558 7.17434 7.25551 7.56441 7.60673 7.68764 7.73070 7.83638 7.85507 8.20628 8.31959 8.67548 8.87797 9.41157 9.75975 10.90912 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016734 B = 0.006906 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.805100 B = 4053.456080 C = 5244.744177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.115 3.885 3 C -0.174 4.174 4 O -0.555 6.555 5 C 0.104 3.896 6 N -0.729 5.729 7 C 0.549 3.451 8 O -0.551 6.551 9 C 0.056 3.944 10 H 0.055 0.945 11 C -0.538 4.538 12 H 0.066 0.934 13 C 0.075 3.925 14 N -0.843 5.843 15 Si 0.886 3.114 16 H -0.279 1.279 17 H -0.287 1.287 18 H -0.272 1.272 19 C -0.013 4.013 20 C -0.100 4.100 21 C -0.145 4.145 22 C -0.145 4.145 23 C -0.148 4.148 24 C -0.065 4.065 25 H 0.068 0.932 26 H 0.059 0.941 27 H 0.067 0.933 28 H 0.059 0.941 29 H 0.063 0.937 30 H 0.066 0.934 31 H 0.378 0.622 32 H 0.059 0.941 33 H 0.057 0.943 34 H 0.399 0.601 35 H 0.263 0.737 36 H 0.106 0.894 37 H 0.100 0.900 38 H 0.099 0.901 39 H 0.101 0.899 40 H 0.128 0.872 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.939 6.279 -1.233 8.083 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.074 3.926 3 C -0.232 4.232 4 O -0.361 6.361 5 C -0.021 4.021 6 N -0.383 5.383 7 C 0.339 3.661 8 O -0.428 6.428 9 C 0.035 3.965 10 H 0.073 0.927 11 C -0.576 4.576 12 H 0.084 0.916 13 C -0.133 4.133 14 N -0.476 5.476 15 Si 0.714 3.286 16 H -0.204 1.204 17 H -0.213 1.213 18 H -0.197 1.197 19 C -0.014 4.014 20 C -0.118 4.118 21 C -0.163 4.163 22 C -0.163 4.163 23 C -0.167 4.167 24 C -0.082 4.082 25 H 0.087 0.913 26 H 0.078 0.922 27 H 0.086 0.914 28 H 0.078 0.922 29 H 0.082 0.918 30 H 0.085 0.915 31 H 0.225 0.775 32 H 0.078 0.922 33 H 0.076 0.924 34 H 0.234 0.766 35 H 0.073 0.927 36 H 0.124 0.876 37 H 0.118 0.882 38 H 0.117 0.883 39 H 0.119 0.881 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -4.849 6.544 -0.624 8.169 hybrid contribution 1.264 -0.373 -1.072 1.699 sum -3.585 6.172 -1.696 7.336 Atomic orbital electron populations 1.21719 0.92584 1.03184 1.01941 1.21448 0.95233 0.90678 0.85222 1.22423 1.01659 0.96522 1.02640 1.86526 1.26948 1.79471 1.43184 1.21711 0.99122 0.84611 0.96703 1.45710 1.55504 1.10236 1.26814 1.21008 0.78418 0.86988 0.79726 1.90528 1.37730 1.77252 1.37312 1.17880 0.95542 0.89307 0.93795 0.92660 1.20690 0.92223 1.37393 1.07263 0.91574 1.25038 0.97063 0.95001 0.96153 1.70089 1.02476 1.40971 1.34035 0.86670 0.78330 0.79927 0.83701 1.20445 1.21279 1.19667 1.19826 0.94866 0.93526 0.93225 1.20968 1.00111 0.98210 0.92547 1.20815 1.02185 0.95645 0.97664 1.20761 1.02602 0.96194 0.96780 1.20987 1.02695 0.99614 0.93363 1.21145 0.94653 0.94818 0.97624 0.91288 0.92156 0.91378 0.92216 0.91753 0.91522 0.77488 0.92230 0.92441 0.76616 0.92652 0.87559 0.88160 0.88258 0.88077 0.85457 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.67 8.67 37.16 0.32 -1.35 16 2 C 0.12 1.55 1.06 -90.62 -0.10 1.46 16 3 C -0.17 -1.89 8.82 37.16 0.33 -1.57 16 4 O -0.56 -8.27 12.72 -35.23 -0.45 -8.71 16 5 C 0.10 1.77 4.78 -4.04 -0.02 1.75 16 6 N -0.73 -14.49 5.05 -60.29 -0.30 -14.79 16 7 C 0.55 13.05 5.45 -10.99 -0.06 12.99 16 8 O -0.55 -14.74 13.95 5.55 0.08 -14.66 16 9 C 0.06 1.33 2.78 -94.08 -0.26 1.07 16 10 H 0.06 1.21 8.14 -51.93 -0.42 0.79 16 11 C -0.54 -13.28 7.12 -34.44 -0.25 -13.52 16 12 H 0.07 1.60 7.81 -52.49 -0.41 1.19 16 13 C 0.08 1.91 3.99 -17.82 -0.07 1.84 16 14 N -0.84 -23.08 10.88 55.43 0.60 -22.47 16 15 Si 0.89 20.06 29.54 -169.99 -5.02 15.03 16 16 H -0.28 -6.32 7.11 56.52 0.40 -5.92 16 17 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 18 H -0.27 -6.06 7.11 56.52 0.40 -5.65 16 19 C -0.01 -0.33 4.52 -104.62 -0.47 -0.80 16 20 C -0.10 -2.30 8.21 -39.58 -0.33 -2.63 16 21 C -0.14 -3.02 10.05 -39.58 -0.40 -3.42 16 22 C -0.15 -2.92 10.05 -39.59 -0.40 -3.32 16 23 C -0.15 -3.15 10.05 -39.59 -0.40 -3.55 16 24 C -0.06 -1.53 8.20 -39.58 -0.32 -1.85 16 25 H 0.07 0.75 8.14 -51.93 -0.42 0.32 16 26 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.07 0.90 6.86 -51.93 -0.36 0.54 16 28 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.38 4.88 9.04 45.56 0.41 5.30 16 32 H 0.06 1.00 8.14 -51.93 -0.42 0.58 16 33 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 34 H 0.40 7.59 7.08 -40.82 -0.29 7.31 16 35 H 0.26 7.14 8.31 -40.82 -0.34 6.80 16 36 H 0.11 2.42 7.01 -52.49 -0.37 2.05 16 37 H 0.10 1.81 8.06 -52.49 -0.42 1.38 16 38 H 0.10 1.69 8.06 -52.49 -0.42 1.27 16 39 H 0.10 1.88 8.06 -52.49 -0.42 1.46 16 40 H 0.13 3.11 6.02 -52.49 -0.32 2.80 16 LS Contribution 328.65 15.07 4.95 4.95 Total: -1.00 -30.34 328.65 -7.67 -38.01 By element: Atomic # 1 Polarization: 20.67 SS G_CDS: -5.11 Total: 15.55 kcal Atomic # 6 Polarization: -10.49 SS G_CDS: -2.42 Total: -12.91 kcal Atomic # 7 Polarization: -37.56 SS G_CDS: 0.30 Total: -37.26 kcal Atomic # 8 Polarization: -23.01 SS G_CDS: -0.37 Total: -23.38 kcal Atomic # 14 Polarization: 20.06 SS G_CDS: -5.02 Total: 15.03 kcal Total LS contribution 4.95 Total: 4.95 kcal Total: -30.34 -7.67 -38.01 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136986472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -33.163 kcal (2) G-P(sol) polarization free energy of solvation -30.336 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -63.499 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.671 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.007 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds