Wall clock time and date at job start Mon Mar 30 2020 01:57:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53001 * 109.47162 * 2 1 4 4 O 1.42899 * 109.47420 * 239.99395 * 2 1 3 5 5 C 1.53001 * 109.47214 * 119.99716 * 2 1 3 6 6 N 1.46503 * 109.47307 * 60.00113 * 5 2 1 7 7 C 1.34769 * 120.00380 * 180.02562 * 6 5 2 8 8 O 1.21283 * 120.00035 * 359.97438 * 7 6 5 9 9 C 1.50698 * 120.00455 * 180.02562 * 7 6 5 10 10 H 1.09000 * 109.47069 * 300.00306 * 9 7 6 11 11 C 1.50702 * 109.47018 * 59.99464 * 9 7 6 12 12 H 1.07997 * 120.00304 * 235.33770 * 11 9 7 13 13 C 1.37879 * 119.99933 * 55.33892 * 11 9 7 14 14 N 1.31516 * 119.99735 * 1.96772 * 13 11 9 15 15 Si 1.86800 * 120.00111 * 181.96427 * 13 11 9 16 16 H 1.48498 * 109.46846 * 90.00198 * 15 13 11 17 17 H 1.48499 * 109.46961 * 209.99878 * 15 13 11 18 18 H 1.48494 * 109.47187 * 329.99881 * 15 13 11 19 19 C 1.50700 * 109.47580 * 179.97438 * 9 7 6 20 20 C 1.38238 * 119.99685 * 47.22350 * 19 9 7 21 21 C 1.38240 * 119.99512 * 180.02562 * 20 19 9 22 22 C 1.38236 * 120.00137 * 359.95537 * 21 20 19 23 23 C 1.38228 * 120.00048 * 359.97438 * 22 21 20 24 24 C 1.38232 * 120.00167 * 227.20237 * 19 9 7 25 25 H 1.09003 * 109.46970 * 299.99904 * 1 2 3 26 26 H 1.08997 * 109.47448 * 60.00408 * 1 2 3 27 27 H 1.09003 * 109.46965 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47127 * 180.02562 * 3 2 1 29 29 H 1.08997 * 109.46606 * 300.00108 * 3 2 1 30 30 H 1.09000 * 109.47163 * 59.99408 * 3 2 1 31 31 H 0.96692 * 114.00047 * 179.97438 * 4 2 1 32 32 H 1.09006 * 109.47206 * 300.00535 * 5 2 1 33 33 H 1.09001 * 109.47520 * 179.97438 * 5 2 1 34 34 H 0.96999 * 119.99668 * 359.97438 * 6 5 2 35 35 H 0.97003 * 120.00319 * 179.97438 * 14 13 11 36 36 H 1.08000 * 120.00284 * 359.97438 * 20 19 9 37 37 H 1.08001 * 119.99592 * 179.97438 * 21 20 19 38 38 H 1.08000 * 119.99403 * 179.72391 * 22 21 20 39 39 H 1.07996 * 120.00078 * 179.97438 * 23 22 21 40 40 H 1.08001 * 120.00068 * 359.97438 * 24 19 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 8 2.0064 -0.6737 -1.1667 5 6 2.0400 -0.7212 1.2493 6 7 1.5517 -2.1025 1.2494 7 6 1.8769 -2.9321 2.2604 8 8 2.5742 -2.5354 3.1701 9 6 1.3751 -4.3531 2.2603 10 1 0.2851 -4.3535 2.2595 11 6 1.8785 -5.0634 1.0301 12 1 1.1802 -5.5395 0.3577 13 6 3.2305 -5.1055 0.7631 14 7 4.0837 -4.5593 1.6018 15 14 3.8504 -5.9383 -0.7898 16 1 3.9161 -4.9450 -1.8917 17 1 5.2045 -6.4966 -0.5452 18 1 2.9234 -7.0354 -1.1669 19 6 1.8773 -5.0635 3.4908 20 6 1.7729 -4.4582 4.7292 21 6 2.2341 -5.1096 5.8579 22 6 2.7988 -6.3666 5.7483 23 6 2.9019 -6.9724 4.5101 24 6 2.4420 -6.3204 3.3812 25 1 -0.3633 0.5138 0.8900 26 1 -0.3634 0.5137 -0.8900 27 1 -0.3633 -1.0277 0.0005 28 1 3.1300 1.4425 -0.0005 29 1 1.6766 1.9562 -0.8900 30 1 1.6766 1.9564 0.8899 31 1 2.9703 -0.7116 -1.2330 32 1 1.6766 -0.2074 2.1393 33 1 3.1300 -0.7216 1.2491 34 1 0.9938 -2.4196 0.5221 35 1 5.0349 -4.5892 1.4142 36 1 1.3318 -3.4761 4.8148 37 1 2.1529 -4.6365 6.8254 38 1 3.1632 -6.8735 6.6296 39 1 3.3434 -7.9542 4.4244 40 1 2.5229 -6.7936 2.4138 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001136986472.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:57:31 Heat of formation + Delta-G solvation = -91.566787 kcal Electronic energy + Delta-G solvation = -22319.342746 eV Core-core repulsion = 19097.753771 eV Total energy + Delta-G solvation = -3221.588975 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.80370 -39.62640 -38.59082 -35.46377 -34.91023 -32.91571 -32.58177 -31.34111 -29.27109 -28.28437 -27.04952 -25.45926 -22.95029 -22.20882 -21.39013 -20.84923 -18.72178 -18.05532 -17.22374 -17.02480 -16.71879 -16.34233 -16.16941 -15.53281 -15.33355 -15.27942 -14.80828 -14.27181 -14.08499 -13.91977 -13.72702 -13.42146 -13.38583 -13.06146 -12.98232 -12.81396 -12.74718 -12.58932 -12.51295 -12.26073 -11.76031 -11.63810 -11.41593 -11.18005 -10.97574 -10.63213 -10.13463 -9.61450 -9.36844 -9.08807 -8.05723 -6.25231 0.88792 0.94303 1.41863 1.46007 1.52838 2.33432 2.46672 2.78761 3.21506 3.31996 3.42070 3.75622 3.94457 4.07399 4.34724 4.36709 4.50873 4.57976 4.60087 4.70319 4.75697 4.85870 4.90012 4.97634 5.01778 5.05062 5.10424 5.17711 5.23073 5.35391 5.46816 5.55596 5.71475 5.89400 5.93123 5.98664 6.01517 6.44131 6.54134 6.75708 6.77805 7.11552 7.43421 7.95328 8.93037 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.016734 B = 0.006906 C = 0.005337 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1672.805100 B = 4053.456080 C = 5244.744177 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.121 3.879 3 C -0.168 4.168 4 O -0.570 6.570 5 C 0.104 3.896 6 N -0.719 5.719 7 C 0.547 3.453 8 O -0.586 6.586 9 C 0.046 3.954 10 H 0.065 0.935 11 C -0.534 4.534 12 H 0.068 0.932 13 C 0.042 3.958 14 N -0.873 5.873 15 Si 0.940 3.060 16 H -0.277 1.277 17 H -0.294 1.294 18 H -0.264 1.264 19 C -0.036 4.036 20 C -0.118 4.118 21 C -0.146 4.146 22 C -0.141 4.141 23 C -0.152 4.152 24 C -0.087 4.087 25 H 0.083 0.917 26 H 0.075 0.925 27 H 0.053 0.947 28 H 0.060 0.940 29 H 0.078 0.922 30 H 0.078 0.922 31 H 0.383 0.617 32 H 0.062 0.938 33 H 0.034 0.966 34 H 0.403 0.597 35 H 0.255 0.745 36 H 0.099 0.901 37 H 0.130 0.870 38 H 0.138 0.862 39 H 0.126 0.874 40 H 0.111 0.889 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.312 6.462 -1.198 8.451 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C 0.080 3.920 3 C -0.226 4.226 4 O -0.377 6.377 5 C -0.021 4.021 6 N -0.372 5.372 7 C 0.337 3.663 8 O -0.467 6.467 9 C 0.025 3.975 10 H 0.083 0.917 11 C -0.572 4.572 12 H 0.086 0.914 13 C -0.162 4.162 14 N -0.507 5.507 15 Si 0.767 3.233 16 H -0.203 1.203 17 H -0.220 1.220 18 H -0.188 1.188 19 C -0.037 4.037 20 C -0.136 4.136 21 C -0.164 4.164 22 C -0.159 4.159 23 C -0.170 4.170 24 C -0.105 4.105 25 H 0.102 0.898 26 H 0.094 0.906 27 H 0.072 0.928 28 H 0.079 0.921 29 H 0.097 0.903 30 H 0.097 0.903 31 H 0.232 0.768 32 H 0.081 0.919 33 H 0.053 0.947 34 H 0.239 0.761 35 H 0.064 0.936 36 H 0.117 0.883 37 H 0.148 0.852 38 H 0.156 0.844 39 H 0.144 0.856 40 H 0.129 0.871 Dipole moment (debyes) X Y Z Total from point charges -5.255 6.735 -0.627 8.565 hybrid contribution 1.334 -0.441 -1.039 1.747 sum -3.921 6.294 -1.666 7.601 Atomic orbital electron populations 1.21760 0.91430 1.02780 1.03472 1.21511 0.96038 0.91547 0.82910 1.22366 1.01765 0.94494 1.03957 1.86508 1.27687 1.79956 1.43542 1.21880 0.97782 0.83339 0.99050 1.45625 1.54678 1.11139 1.25728 1.20995 0.78008 0.87319 0.80009 1.90493 1.39424 1.77935 1.38802 1.18000 0.96163 0.89581 0.93807 0.91700 1.20867 0.92255 1.36723 1.07327 0.91364 1.25539 0.97171 0.95385 0.98136 1.70249 1.02034 1.42808 1.35642 0.85823 0.77422 0.79212 0.80878 1.20307 1.22048 1.18836 1.19939 0.95955 0.94060 0.93745 1.21037 1.01178 0.98261 0.93145 1.21195 1.01028 0.95985 0.98217 1.21175 1.01265 0.95817 0.97643 1.21315 1.01946 1.00620 0.93165 1.21122 0.96264 0.95169 0.97944 0.89771 0.90643 0.92750 0.92128 0.90288 0.90297 0.76793 0.91942 0.94713 0.76124 0.93598 0.88279 0.85208 0.84384 0.85581 0.87104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.12 8.67 71.98 0.62 -2.49 16 2 C 0.12 3.11 1.06 -10.79 -0.01 3.09 16 3 C -0.17 -3.30 8.82 71.98 0.63 -2.66 16 4 O -0.57 -16.42 12.72 -148.98 -1.90 -18.32 16 5 C 0.10 3.55 4.78 86.38 0.41 3.96 16 6 N -0.72 -28.92 5.05 -463.05 -2.34 -31.25 16 7 C 0.55 26.53 5.45 87.66 0.48 27.01 16 8 O -0.59 -32.17 13.95 -3.04 -0.04 -32.21 16 9 C 0.05 2.21 2.78 -13.03 -0.04 2.18 16 10 H 0.07 2.90 8.14 -2.39 -0.02 2.88 16 11 C -0.53 -26.59 7.12 25.60 0.18 -26.41 16 12 H 0.07 3.30 7.81 -2.91 -0.02 3.27 16 13 C 0.04 2.15 3.99 84.65 0.34 2.49 16 14 N -0.87 -48.70 10.88 21.45 0.23 -48.47 16 15 Si 0.94 41.40 29.54 68.60 2.03 43.42 16 16 H -0.28 -12.07 7.11 99.48 0.71 -11.37 16 17 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 18 H -0.26 -11.19 7.11 99.48 0.71 -10.48 16 19 C -0.04 -1.77 4.52 -19.87 -0.09 -1.86 16 20 C -0.12 -5.45 8.21 22.27 0.18 -5.27 16 21 C -0.15 -5.85 10.05 22.27 0.22 -5.63 16 22 C -0.14 -5.32 10.05 22.27 0.22 -5.09 16 23 C -0.15 -6.27 10.05 22.27 0.22 -6.04 16 24 C -0.09 -4.14 8.20 22.27 0.18 -3.96 16 25 H 0.08 1.64 8.14 -2.39 -0.02 1.62 16 26 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 27 H 0.05 1.38 6.86 -2.39 -0.02 1.36 16 28 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 29 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 30 H 0.08 1.37 8.14 -2.39 -0.02 1.35 16 31 H 0.38 9.75 9.04 -74.06 -0.67 9.08 16 32 H 0.06 2.09 8.14 -2.38 -0.02 2.07 16 33 H 0.03 1.34 8.14 -2.39 -0.02 1.32 16 34 H 0.40 15.42 7.08 -92.71 -0.66 14.76 16 35 H 0.25 14.14 8.31 -92.71 -0.77 13.37 16 36 H 0.10 4.61 7.01 -2.91 -0.02 4.59 16 37 H 0.13 4.33 8.06 -2.91 -0.02 4.31 16 38 H 0.14 4.11 8.06 -2.91 -0.02 4.08 16 39 H 0.13 4.43 8.06 -2.91 -0.02 4.41 16 40 H 0.11 5.53 6.02 -2.91 -0.02 5.51 16 Total: -1.00 -65.20 328.65 1.27 -63.92 By element: Atomic # 1 Polarization: 43.86 SS G_CDS: -0.28 Total: 43.58 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: 3.57 Total: -20.68 kcal Atomic # 7 Polarization: -77.62 SS G_CDS: -2.10 Total: -79.72 kcal Atomic # 8 Polarization: -48.59 SS G_CDS: -1.94 Total: -50.53 kcal Atomic # 14 Polarization: 41.40 SS G_CDS: 2.03 Total: 43.42 kcal Total: -65.20 1.27 -63.92 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001136986472.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.645 kcal (2) G-P(sol) polarization free energy of solvation -65.196 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.275 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.922 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.567 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds