Wall clock time and date at job start Mon Mar 30 2020 01:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47119 * 2 1 4 4 C 1.52998 * 109.47317 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47318 * 185.07771 * 4 3 2 6 6 C 1.36935 * 119.99657 * 277.34615 * 5 4 3 7 7 H 1.07997 * 120.00409 * 4.18596 * 6 5 4 8 8 C 1.38814 * 120.00101 * 184.17910 * 6 5 4 9 9 N 1.31627 * 119.99719 * 36.84126 * 8 6 5 10 10 Si 1.86800 * 120.00465 * 216.84210 * 8 6 5 11 11 H 1.48500 * 109.47207 * 89.99890 * 10 8 6 12 12 H 1.48504 * 109.47095 * 210.00269 * 10 8 6 13 13 H 1.48500 * 109.46937 * 329.99746 * 10 8 6 14 14 C 1.46501 * 120.00305 * 97.34542 * 5 4 3 15 15 C 1.50700 * 109.47072 * 255.00030 * 14 5 4 16 16 C 1.37971 * 120.07552 * 268.91172 * 15 14 5 17 17 C 1.38347 * 120.14856 * 179.72448 * 16 15 14 18 18 C 1.38390 * 120.30265 * 0.27559 * 17 16 15 19 19 C 1.37918 * 120.15142 * 0.02562 * 18 17 16 20 20 C 1.39612 * 120.07845 * 89.19865 * 15 14 5 21 21 C 1.47725 * 120.14802 * 0.02562 * 20 15 14 22 22 O 1.21473 * 120.00228 * 2.47241 * 21 20 15 23 23 O 1.34713 * 120.00254 * 182.47152 * 21 20 15 24 24 H 1.08999 * 109.47332 * 300.00572 * 1 2 3 25 25 H 1.09004 * 109.46888 * 60.00383 * 1 2 3 26 26 H 1.09000 * 109.46752 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47578 * 239.99901 * 2 1 3 28 28 H 1.08999 * 109.47283 * 119.99417 * 2 1 3 29 29 H 1.09001 * 109.46976 * 59.99533 * 3 2 1 30 30 H 1.09004 * 109.46928 * 299.99593 * 3 2 1 31 31 H 1.09006 * 109.47248 * 65.07504 * 4 3 2 32 32 H 1.08996 * 109.47164 * 305.07518 * 4 3 2 33 33 H 0.96992 * 119.99785 * 184.29979 * 9 8 6 34 34 H 1.08999 * 109.46958 * 135.00174 * 14 5 4 35 35 H 1.09000 * 109.46904 * 14.99808 * 14 5 4 36 36 H 1.07995 * 119.92300 * 359.97438 * 16 15 14 37 37 H 1.07994 * 119.84674 * 180.24722 * 17 16 15 38 38 H 1.07997 * 119.92416 * 180.02562 * 18 17 16 39 39 H 1.08004 * 120.08042 * 180.02562 * 19 18 17 40 40 H 0.96693 * 117.00379 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8184 0.1229 6 6 4.1439 3.6156 -0.9872 7 1 3.7886 3.2538 -1.9407 8 6 4.6874 4.8890 -0.8869 9 7 5.7054 5.1085 -0.0820 10 14 3.9740 6.2911 -1.8943 11 1 2.8976 6.9593 -1.1198 12 1 5.0443 7.2731 -2.2033 13 1 3.4133 5.7553 -3.1607 14 6 4.4548 3.3413 1.4327 15 6 3.3914 4.2801 1.9417 16 6 3.4682 5.6289 1.6616 17 6 2.4898 6.4912 2.1233 18 6 1.4314 6.0090 2.8733 19 6 1.3456 4.6639 3.1658 20 6 2.3296 3.7878 2.7028 21 6 2.2445 2.3459 3.0124 22 8 3.1228 1.5924 2.6430 23 8 1.1929 1.8664 3.7045 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9564 -0.8901 31 1 3.9337 1.0094 -0.9311 32 1 3.9330 0.8522 0.8419 33 1 6.0452 6.0094 0.0356 34 1 5.3988 3.8782 1.3389 35 1 4.5750 2.5146 2.1327 36 1 4.2917 6.0117 1.0773 37 1 2.5526 7.5454 1.8979 38 1 0.6708 6.6875 3.2303 39 1 0.5189 4.2888 3.7508 40 1 1.1810 0.9161 3.8827 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001140503700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:50 Heat of formation + Delta-G solvation = -33.084831 kcal Electronic energy + Delta-G solvation = -23139.912727 eV Core-core repulsion = 19920.859719 eV Total energy + Delta-G solvation = -3219.053008 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.10677 -38.08889 -36.36810 -35.44378 -34.17459 -31.53552 -30.85527 -30.42437 -27.90080 -25.78539 -24.09234 -23.49837 -21.71840 -20.89249 -20.12243 -20.01032 -17.59653 -17.03326 -16.53500 -15.48413 -15.16921 -14.96125 -14.50185 -14.28727 -13.79563 -13.60850 -13.47053 -13.26541 -12.72984 -12.59174 -12.24781 -12.06035 -11.74729 -11.33793 -11.22285 -11.08159 -10.92362 -10.86057 -10.75295 -10.42336 -10.40555 -10.24916 -10.16654 -9.73250 -9.65928 -8.98722 -8.51397 -8.35583 -7.93449 -6.87517 -5.75682 -3.09980 1.35091 2.09372 3.14749 3.39546 3.47869 3.49275 3.52326 4.43992 4.56296 5.13743 5.36694 5.37789 5.40576 5.50171 5.56928 5.61469 5.79803 5.89801 6.01112 6.06414 6.16340 6.28378 6.33722 6.40363 6.42379 6.48246 6.63528 6.67557 6.73114 6.80549 6.91147 7.02591 7.06583 7.19950 7.24686 7.54685 7.62902 7.79435 7.84082 8.33541 8.45473 9.14811 9.86403 10.31376 11.13591 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.009342 C = 0.007081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.222619 B = 2996.484047 C = 3953.273237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.121 4.121 3 C -0.133 4.133 4 C 0.154 3.846 5 N -0.575 5.575 6 C -0.233 4.233 7 H 0.075 0.925 8 C -0.003 4.003 9 N -0.875 5.875 10 Si 0.859 3.141 11 H -0.284 1.284 12 H -0.293 1.293 13 H -0.281 1.281 14 C 0.134 3.866 15 C 0.009 3.991 16 C -0.116 4.116 17 C -0.098 4.098 18 C -0.158 4.158 19 C -0.080 4.080 20 C -0.142 4.142 21 C 0.523 3.477 22 O -0.492 6.492 23 O -0.524 6.524 24 H 0.049 0.951 25 H 0.050 0.950 26 H 0.045 0.955 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.050 0.950 30 H 0.050 0.950 31 H 0.034 0.966 32 H 0.059 0.941 33 H 0.253 0.747 34 H 0.118 0.882 35 H 0.075 0.925 36 H 0.155 0.845 37 H 0.113 0.887 38 H 0.115 0.885 39 H 0.122 0.878 40 H 0.403 0.597 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.288 -3.803 6.895 11.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.159 4.159 3 C -0.173 4.173 4 C 0.027 3.973 5 N -0.292 5.292 6 C -0.361 4.361 7 H 0.093 0.907 8 C -0.199 4.199 9 N -0.523 5.523 10 Si 0.688 3.312 11 H -0.211 1.211 12 H -0.220 1.220 13 H -0.206 1.206 14 C 0.009 3.991 15 C 0.005 3.995 16 C -0.135 4.135 17 C -0.116 4.116 18 C -0.177 4.177 19 C -0.098 4.098 20 C -0.144 4.144 21 C 0.369 3.631 22 O -0.381 6.381 23 O -0.336 6.336 24 H 0.068 0.932 25 H 0.069 0.931 26 H 0.064 0.936 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.052 0.948 32 H 0.078 0.922 33 H 0.064 0.936 34 H 0.135 0.865 35 H 0.093 0.907 36 H 0.172 0.828 37 H 0.131 0.869 38 H 0.133 0.867 39 H 0.140 0.860 40 H 0.260 0.740 Dipole moment (debyes) X Y Z Total from point charges -7.859 -3.514 6.634 10.868 hybrid contribution -0.908 0.453 -0.482 1.124 sum -8.767 -3.061 6.152 11.139 Atomic orbital electron populations 1.21763 0.96866 1.00462 1.01485 1.21485 0.94838 0.98440 1.01166 1.22238 0.99697 0.94291 1.01102 1.20895 0.91214 0.86220 0.98924 1.43991 1.73236 1.09031 1.02975 1.19301 1.32281 0.95300 0.89232 0.90676 1.24331 0.97617 0.98505 0.99473 1.70193 1.20439 1.20147 1.41483 0.86923 0.79839 0.83974 0.80470 1.21059 1.22037 1.20582 1.21015 0.96996 0.95304 0.85780 1.21172 0.94673 0.95479 0.88128 1.22013 0.99967 0.92948 0.98550 1.21479 0.94441 0.99639 0.96087 1.20888 0.99479 0.95204 1.02117 1.21194 0.97142 0.93290 0.98170 1.18984 0.99681 0.88906 1.06797 1.21119 0.78501 0.89610 0.73863 1.90809 1.38364 1.59424 1.49510 1.84589 1.47328 1.31524 1.70142 0.93229 0.93117 0.93575 0.92703 0.92581 0.93102 0.93102 0.94770 0.92243 0.93596 0.86510 0.90725 0.82808 0.86860 0.86653 0.85968 0.73978 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.00 9.91 37.16 0.37 -1.64 16 2 C -0.12 -1.88 5.93 -26.73 -0.16 -2.04 16 3 C -0.13 -2.58 4.97 -26.73 -0.13 -2.71 16 4 C 0.15 3.32 4.93 -4.04 -0.02 3.30 16 5 N -0.58 -14.18 2.59 -174.61 -0.45 -14.63 16 6 C -0.23 -6.22 9.44 -15.06 -0.14 -6.36 16 7 H 0.08 2.03 8.04 -52.49 -0.42 1.61 16 8 C 0.00 -0.08 3.17 -17.43 -0.06 -0.13 16 9 N -0.88 -23.40 8.95 55.49 0.50 -22.90 16 10 Si 0.86 20.88 28.70 -169.99 -4.88 16.00 16 11 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 12 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 13 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 14 C 0.13 3.22 4.91 -5.19 -0.03 3.19 16 15 C 0.01 0.20 5.28 -104.21 -0.55 -0.35 16 16 C -0.12 -2.55 8.21 -39.64 -0.33 -2.87 16 17 C -0.10 -1.84 10.04 -39.49 -0.40 -2.23 16 18 C -0.16 -2.64 10.03 -39.64 -0.40 -3.03 16 19 C -0.08 -1.37 9.62 -39.17 -0.38 -1.74 16 20 C -0.14 -2.77 5.57 -104.98 -0.58 -3.36 16 21 C 0.52 9.33 6.07 34.61 0.21 9.54 16 22 O -0.49 -9.55 10.19 -19.25 -0.20 -9.75 16 23 O -0.52 -7.23 12.68 -40.53 -0.51 -7.74 16 24 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 25 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 26 H 0.05 0.53 8.14 -51.93 -0.42 0.11 16 27 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 29 H 0.05 1.03 4.83 -51.93 -0.25 0.77 16 30 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 31 H 0.03 0.74 8.10 -51.93 -0.42 0.32 16 32 H 0.06 1.27 6.10 -51.93 -0.32 0.96 16 33 H 0.25 6.51 8.01 -40.82 -0.33 6.18 16 34 H 0.12 3.11 5.20 -51.93 -0.27 2.84 16 35 H 0.07 1.76 4.91 -52.00 -0.26 1.50 16 36 H 0.15 3.66 3.98 -52.49 -0.21 3.45 16 37 H 0.11 1.87 8.06 -52.49 -0.42 1.44 16 38 H 0.12 1.54 8.06 -52.49 -0.42 1.12 16 39 H 0.12 1.80 7.61 -52.48 -0.40 1.40 16 40 H 0.40 3.70 9.11 45.56 0.42 4.11 16 LS Contribution 313.40 15.07 4.72 4.72 Total: -1.00 -28.67 313.40 -8.04 -36.72 By element: Atomic # 1 Polarization: 12.68 SS G_CDS: -4.63 Total: 8.04 kcal Atomic # 6 Polarization: -7.86 SS G_CDS: -2.59 Total: -10.45 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: 0.04 Total: -37.54 kcal Atomic # 8 Polarization: -16.78 SS G_CDS: -0.71 Total: -17.49 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.88 Total: 16.00 kcal Total LS contribution 4.72 Total: 4.72 kcal Total: -28.67 -8.04 -36.72 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140503700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.631 kcal (2) G-P(sol) polarization free energy of solvation -28.671 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.040 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.045 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.716 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.085 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds