Wall clock time and date at job start Mon Mar 30 2020 01:54:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53006 * 109.47119 * 2 1 4 4 C 1.52998 * 109.47317 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47318 * 185.07771 * 4 3 2 6 6 C 1.36935 * 119.99657 * 277.34615 * 5 4 3 7 7 H 1.07997 * 120.00409 * 4.18596 * 6 5 4 8 8 C 1.38814 * 120.00101 * 184.17910 * 6 5 4 9 9 N 1.31627 * 119.99719 * 36.84126 * 8 6 5 10 10 Si 1.86800 * 120.00465 * 216.84210 * 8 6 5 11 11 H 1.48500 * 109.47207 * 89.99890 * 10 8 6 12 12 H 1.48504 * 109.47095 * 210.00269 * 10 8 6 13 13 H 1.48500 * 109.46937 * 329.99746 * 10 8 6 14 14 C 1.46501 * 120.00305 * 97.34542 * 5 4 3 15 15 C 1.50700 * 109.47072 * 255.00030 * 14 5 4 16 16 C 1.37971 * 120.07552 * 268.91172 * 15 14 5 17 17 C 1.38347 * 120.14856 * 179.72448 * 16 15 14 18 18 C 1.38390 * 120.30265 * 0.27559 * 17 16 15 19 19 C 1.37918 * 120.15142 * 0.02562 * 18 17 16 20 20 C 1.39612 * 120.07845 * 89.19865 * 15 14 5 21 21 C 1.47725 * 120.14802 * 0.02562 * 20 15 14 22 22 O 1.21473 * 120.00228 * 2.47241 * 21 20 15 23 23 O 1.34713 * 120.00254 * 182.47152 * 21 20 15 24 24 H 1.08999 * 109.47332 * 300.00572 * 1 2 3 25 25 H 1.09004 * 109.46888 * 60.00383 * 1 2 3 26 26 H 1.09000 * 109.46752 * 179.97438 * 1 2 3 27 27 H 1.09001 * 109.47578 * 239.99901 * 2 1 3 28 28 H 1.08999 * 109.47283 * 119.99417 * 2 1 3 29 29 H 1.09001 * 109.46976 * 59.99533 * 3 2 1 30 30 H 1.09004 * 109.46928 * 299.99593 * 3 2 1 31 31 H 1.09006 * 109.47248 * 65.07504 * 4 3 2 32 32 H 1.08996 * 109.47164 * 305.07518 * 4 3 2 33 33 H 0.96992 * 119.99785 * 184.29979 * 9 8 6 34 34 H 1.08999 * 109.46958 * 135.00174 * 14 5 4 35 35 H 1.09000 * 109.46904 * 14.99808 * 14 5 4 36 36 H 1.07995 * 119.92300 * 359.97438 * 16 15 14 37 37 H 1.07994 * 119.84674 * 180.24722 * 17 16 15 38 38 H 1.07997 * 119.92416 * 180.02562 * 18 17 16 39 39 H 1.08004 * 120.08042 * 180.02562 * 19 18 17 40 40 H 0.96693 * 117.00379 * 179.97438 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5700 1.4426 0.0006 5 7 4.0582 2.8184 0.1229 6 6 4.1439 3.6156 -0.9872 7 1 3.7886 3.2538 -1.9407 8 6 4.6874 4.8890 -0.8869 9 7 5.7054 5.1085 -0.0820 10 14 3.9740 6.2911 -1.8943 11 1 2.8976 6.9593 -1.1198 12 1 5.0443 7.2731 -2.2033 13 1 3.4133 5.7553 -3.1607 14 6 4.4548 3.3413 1.4327 15 6 3.3914 4.2801 1.9417 16 6 3.4682 5.6289 1.6616 17 6 2.4898 6.4912 2.1233 18 6 1.4314 6.0090 2.8733 19 6 1.3456 4.6639 3.1658 20 6 2.3296 3.7878 2.7028 21 6 2.2445 2.3459 3.0124 22 8 3.1228 1.5924 2.6430 23 8 1.1929 1.8664 3.7045 24 1 -0.3634 0.5139 0.8899 25 1 -0.3633 0.5138 -0.8901 26 1 -0.3633 -1.0277 -0.0005 27 1 1.8934 -0.5138 -0.8900 28 1 1.8933 -0.5137 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9564 -0.8901 31 1 3.9337 1.0094 -0.9311 32 1 3.9330 0.8522 0.8419 33 1 6.0452 6.0094 0.0356 34 1 5.3988 3.8782 1.3389 35 1 4.5750 2.5146 2.1327 36 1 4.2917 6.0117 1.0773 37 1 2.5526 7.5454 1.8979 38 1 0.6708 6.6875 3.2303 39 1 0.5189 4.2888 3.7508 40 1 1.1810 0.9161 3.8827 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001140503700.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:50 Heat of formation + Delta-G solvation = -49.019432 kcal Electronic energy + Delta-G solvation = -23140.603703 eV Core-core repulsion = 19920.859719 eV Total energy + Delta-G solvation = -3219.743984 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.67 seconds Orbital eigenvalues (eV) -41.50744 -39.51776 -37.97295 -36.79236 -35.69606 -33.34020 -32.36097 -31.94899 -29.43276 -27.57979 -25.68138 -24.97070 -23.20452 -22.30970 -21.74798 -21.51302 -18.91383 -18.86791 -17.96740 -16.92921 -16.83150 -16.64895 -15.91569 -15.80149 -15.31162 -15.22626 -15.07016 -14.79705 -14.20558 -14.02609 -13.70949 -13.49218 -13.22122 -12.98447 -12.78137 -12.75890 -12.45424 -12.35139 -12.25171 -12.16744 -12.01261 -11.83447 -11.66403 -11.53610 -11.27650 -10.66399 -10.36484 -9.82225 -9.48438 -8.82269 -7.74236 -5.12549 -0.09316 0.63715 1.42877 1.49074 1.53451 1.75369 2.24358 2.55347 2.98279 3.15489 3.83515 4.06267 4.13725 4.16225 4.20492 4.29689 4.40821 4.46484 4.57060 4.63325 4.85152 4.87539 4.95427 4.99254 5.05341 5.08133 5.14627 5.16477 5.30080 5.39238 5.46954 5.49716 5.55483 5.64083 5.68330 5.73225 5.94798 6.01761 6.14419 6.40487 7.15615 7.19677 7.93478 8.35923 9.11811 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014701 B = 0.009342 C = 0.007081 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1904.222619 B = 2996.484047 C = 3953.273237 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.115 4.115 3 C -0.120 4.120 4 C 0.155 3.845 5 N -0.587 5.587 6 C -0.252 4.252 7 H 0.062 0.938 8 C -0.026 4.026 9 N -0.891 5.891 10 Si 0.904 3.096 11 H -0.278 1.278 12 H -0.296 1.296 13 H -0.284 1.284 14 C 0.143 3.857 15 C -0.016 4.016 16 C -0.146 4.146 17 C -0.103 4.103 18 C -0.144 4.144 19 C -0.071 4.071 20 C -0.155 4.155 21 C 0.529 3.471 22 O -0.515 6.515 23 O -0.507 6.507 24 H 0.051 0.949 25 H 0.045 0.955 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.063 0.937 29 H 0.044 0.956 30 H 0.029 0.971 31 H 0.024 0.976 32 H 0.059 0.941 33 H 0.251 0.749 34 H 0.085 0.915 35 H 0.073 0.927 36 H 0.129 0.871 37 H 0.133 0.867 38 H 0.160 0.840 39 H 0.156 0.844 40 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.259 -3.852 8.307 14.513 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.153 4.153 3 C -0.159 4.159 4 C 0.029 3.971 5 N -0.306 5.306 6 C -0.381 4.381 7 H 0.080 0.920 8 C -0.221 4.221 9 N -0.539 5.539 10 Si 0.733 3.267 11 H -0.205 1.205 12 H -0.223 1.223 13 H -0.210 1.210 14 C 0.018 3.982 15 C -0.020 4.020 16 C -0.165 4.165 17 C -0.121 4.121 18 C -0.162 4.162 19 C -0.089 4.089 20 C -0.157 4.157 21 C 0.375 3.625 22 O -0.406 6.406 23 O -0.321 6.321 24 H 0.070 0.930 25 H 0.064 0.936 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.081 0.919 29 H 0.063 0.937 30 H 0.048 0.952 31 H 0.042 0.958 32 H 0.078 0.922 33 H 0.063 0.937 34 H 0.102 0.898 35 H 0.091 0.909 36 H 0.146 0.854 37 H 0.151 0.849 38 H 0.177 0.823 39 H 0.173 0.827 40 H 0.287 0.713 Dipole moment (debyes) X Y Z Total from point charges -10.858 -3.584 8.070 13.996 hybrid contribution 0.001 0.447 -0.829 0.942 sum -10.857 -3.137 7.241 13.422 Atomic orbital electron populations 1.21712 0.94844 1.02079 1.01398 1.21431 0.96537 0.95616 1.01730 1.22043 0.97584 0.96676 0.99645 1.20950 0.92932 0.84934 0.98256 1.44125 1.73784 1.09878 1.02797 1.19347 1.32834 0.96337 0.89617 0.91966 1.24698 0.97570 0.99421 1.00453 1.70281 1.20966 1.20166 1.42449 0.86233 0.79112 0.82021 0.79285 1.20492 1.22305 1.20978 1.20733 0.96633 0.95274 0.85568 1.20930 0.95357 0.95345 0.90324 1.21880 1.00844 0.93670 1.00056 1.21737 0.94162 1.00257 0.95942 1.21356 0.99090 0.95722 1.00070 1.21596 0.96884 0.93217 0.97212 1.19175 0.99499 0.90566 1.06451 1.20845 0.78878 0.88974 0.73816 1.90790 1.39478 1.59790 1.50573 1.84504 1.45133 1.33663 1.68805 0.92987 0.93552 0.91100 0.92316 0.91861 0.93704 0.95228 0.95809 0.92237 0.93748 0.89822 0.90898 0.85359 0.84875 0.82286 0.82664 0.71272 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 9.91 71.98 0.71 -2.75 16 2 C -0.11 -3.38 5.93 30.60 0.18 -3.20 16 3 C -0.12 -4.60 4.97 30.60 0.15 -4.45 16 4 C 0.15 6.85 4.93 86.38 0.43 7.27 16 5 N -0.59 -30.04 2.59 -706.35 -1.83 -31.87 16 6 C -0.25 -14.01 9.44 84.03 0.79 -13.21 16 7 H 0.06 3.52 8.04 -2.91 -0.02 3.49 16 8 C -0.03 -1.39 3.17 84.86 0.27 -1.12 16 9 N -0.89 -49.63 8.95 21.65 0.19 -49.43 16 10 Si 0.90 43.82 28.70 68.60 1.97 45.79 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 H -0.30 -14.33 7.11 99.48 0.71 -13.62 16 13 H -0.28 -13.80 7.11 99.48 0.71 -13.10 16 14 C 0.14 7.13 4.91 85.63 0.42 7.55 16 15 C -0.02 -0.73 5.28 -19.60 -0.10 -0.83 16 16 C -0.15 -6.43 8.21 22.23 0.18 -6.25 16 17 C -0.10 -3.65 10.04 22.33 0.22 -3.42 16 18 C -0.14 -4.22 10.03 22.23 0.22 -4.00 16 19 C -0.07 -2.18 9.62 22.53 0.22 -1.96 16 20 C -0.16 -5.83 5.57 -20.10 -0.11 -5.94 16 21 C 0.53 17.88 6.07 70.33 0.43 18.31 16 22 O -0.52 -19.70 10.19 19.92 0.20 -19.49 16 23 O -0.51 -12.15 12.68 -56.23 -0.71 -12.86 16 24 H 0.05 1.23 8.14 -2.39 -0.02 1.21 16 25 H 0.05 1.16 8.14 -2.38 -0.02 1.14 16 26 H 0.07 1.38 8.14 -2.39 -0.02 1.36 16 27 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 28 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 29 H 0.04 1.77 4.83 -2.39 -0.01 1.76 16 30 H 0.03 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.02 1.07 8.10 -2.38 -0.02 1.05 16 32 H 0.06 2.60 6.10 -2.39 -0.01 2.59 16 33 H 0.25 13.50 8.01 -92.71 -0.74 12.76 16 34 H 0.08 4.73 5.20 -2.39 -0.01 4.71 16 35 H 0.07 3.57 4.91 -3.51 -0.02 3.55 16 36 H 0.13 6.31 3.98 -2.91 -0.01 6.30 16 37 H 0.13 4.07 8.06 -2.91 -0.02 4.05 16 38 H 0.16 3.29 8.06 -2.91 -0.02 3.27 16 39 H 0.16 3.72 7.61 -2.91 -0.02 3.70 16 40 H 0.43 6.15 9.11 -74.06 -0.67 5.48 16 Total: -1.00 -64.23 313.40 4.24 -59.99 By element: Atomic # 1 Polarization: 21.50 SS G_CDS: 0.41 Total: 21.91 kcal Atomic # 6 Polarization: -18.04 SS G_CDS: 4.01 Total: -14.02 kcal Atomic # 7 Polarization: -79.67 SS G_CDS: -1.64 Total: -81.31 kcal Atomic # 8 Polarization: -31.84 SS G_CDS: -0.51 Total: -32.35 kcal Atomic # 14 Polarization: 43.82 SS G_CDS: 1.97 Total: 45.79 kcal Total: -64.23 4.24 -59.99 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001140503700.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.971 kcal (2) G-P(sol) polarization free energy of solvation -64.232 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.241 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.991 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds