Wall clock time and date at job start Mon Mar 30 2020 01:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47332 * 2 1 4 4 C 1.53000 * 109.47682 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47286 * 180.02562 * 4 3 2 6 6 C 1.36937 * 120.00267 * 84.69436 * 5 4 3 7 7 H 1.07997 * 120.00373 * 320.92844 * 6 5 4 8 8 C 1.38814 * 119.99951 * 140.92510 * 6 5 4 9 9 N 1.31624 * 119.99910 * 339.72507 * 8 6 5 10 10 Si 1.86799 * 120.00145 * 159.72455 * 8 6 5 11 11 H 1.48503 * 109.46815 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47021 * 119.99842 * 10 8 6 13 13 H 1.48499 * 109.47182 * 240.00474 * 10 8 6 14 14 C 1.46500 * 119.99934 * 264.69551 * 5 4 3 15 15 C 1.50701 * 109.47173 * 90.00050 * 14 5 4 16 16 C 1.38286 * 119.98543 * 259.72318 * 15 14 5 17 17 C 1.38208 * 120.14462 * 179.67858 * 16 15 14 18 18 C 1.38283 * 120.14116 * 0.65280 * 17 16 15 19 19 C 1.38506 * 120.02765 * 359.64007 * 18 17 16 20 20 C 1.38499 * 119.98779 * 80.00405 * 15 14 5 21 21 O 1.36496 * 131.53905 * 0.02562 * 20 15 14 22 22 C 1.43989 * 105.48610 * 162.68743 * 21 20 15 23 23 O 1.36501 * 131.53791 * 180.02562 * 19 18 17 24 24 H 1.08996 * 109.46800 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47221 * 300.00465 * 1 2 3 26 26 H 1.09002 * 109.46575 * 60.00132 * 1 2 3 27 27 H 1.09004 * 109.47500 * 240.00104 * 2 1 3 28 28 H 1.09001 * 109.47467 * 119.99686 * 2 1 3 29 29 H 1.09005 * 109.47245 * 59.99495 * 3 2 1 30 30 H 1.09007 * 109.47001 * 300.00205 * 3 2 1 31 31 H 1.08996 * 109.47141 * 59.99369 * 4 3 2 32 32 H 1.09002 * 109.46304 * 299.99916 * 4 3 2 33 33 H 0.96996 * 119.99685 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.47342 * 210.00113 * 14 5 4 35 35 H 1.08998 * 109.47117 * 330.00032 * 14 5 4 36 36 H 1.08005 * 119.92747 * 0.02562 * 16 15 14 37 37 H 1.07996 * 119.92912 * 180.28899 * 17 16 15 38 38 H 1.07994 * 119.98677 * 179.65690 * 18 17 16 39 39 H 1.09006 * 110.56901 * 268.55849 * 22 21 20 40 40 H 1.08998 * 110.70106 * 145.75821 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1836 3.5052 1.1811 7 1 3.4386 3.3877 1.9540 8 6 5.2685 4.3469 1.3850 9 7 6.3574 4.2046 0.6595 10 14 5.1829 5.6817 2.6891 11 1 3.8595 5.6329 3.3611 12 1 6.2561 5.4634 3.6919 13 1 5.3646 7.0100 2.0506 14 6 4.4125 3.4760 -1.2631 15 6 3.2001 4.1713 -1.8267 16 6 2.4705 3.5761 -2.8395 17 6 1.3542 4.2078 -3.3543 18 6 0.9698 5.4439 -2.8680 19 6 1.6992 6.0487 -1.8578 20 6 2.8203 5.4088 -1.3341 21 8 3.3597 6.2003 -0.3616 22 6 2.7999 7.5093 -0.5769 23 8 1.5365 7.2408 -1.2131 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9330 0.9288 -0.8908 32 1 3.9336 0.9286 0.8892 33 1 7.1152 4.7931 0.8017 34 1 5.2011 4.2074 -1.0858 35 1 4.7644 2.7271 -1.9726 36 1 2.7705 2.6130 -3.2253 37 1 0.7843 3.7377 -4.1420 38 1 0.1003 5.9377 -3.2759 39 1 3.4418 8.0971 -1.2332 40 1 2.6493 8.0247 0.3716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001141958440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:41 Heat of formation + Delta-G solvation = -25.150746 kcal Electronic energy + Delta-G solvation = -22688.629600 eV Core-core repulsion = 19469.920640 eV Total energy + Delta-G solvation = -3218.708960 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.50621 -37.64238 -36.09103 -35.52259 -33.98446 -31.45688 -30.48579 -29.36254 -27.81512 -25.57030 -25.22731 -23.82550 -22.26205 -21.62949 -20.50058 -20.06807 -17.45045 -17.16374 -16.69482 -16.26639 -15.70140 -14.82479 -14.77468 -14.01728 -13.80595 -13.64926 -13.47470 -13.44404 -13.06769 -12.82616 -12.30288 -12.25597 -12.12652 -11.81858 -11.73602 -11.18515 -11.08706 -10.81231 -10.65215 -10.52390 -10.51461 -10.31228 -10.23367 -9.98329 -9.86652 -9.63635 -8.41869 -8.01436 -7.43853 -6.52392 -5.75370 -3.32616 1.75048 1.85413 3.31846 3.41261 3.47255 3.51043 4.09626 4.17706 4.56284 5.09709 5.11470 5.29198 5.31772 5.41994 5.43032 5.50210 5.61987 5.64666 5.72964 5.79960 5.93539 6.01799 6.11193 6.18295 6.35483 6.39897 6.42435 6.48485 6.63988 6.67448 6.69537 6.73380 6.89722 7.03393 7.04112 7.20063 7.25806 7.61046 7.81654 7.88149 8.57219 9.22209 9.84924 10.42087 11.25294 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011681 B = 0.009898 C = 0.006426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.471865 B = 2828.089211 C = 4356.231815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.121 4.121 3 C -0.139 4.139 4 C 0.149 3.851 5 N -0.573 5.573 6 C -0.249 4.249 7 H 0.055 0.945 8 C 0.029 3.971 9 N -0.885 5.885 10 Si 0.894 3.106 11 H -0.277 1.277 12 H -0.294 1.294 13 H -0.287 1.287 14 C 0.178 3.822 15 C -0.060 4.060 16 C -0.114 4.114 17 C -0.123 4.123 18 C -0.123 4.123 19 C 0.015 3.985 20 C 0.062 3.938 21 O -0.273 6.273 22 C 0.205 3.795 23 O -0.319 6.319 24 H 0.045 0.955 25 H 0.050 0.950 26 H 0.050 0.950 27 H 0.054 0.946 28 H 0.055 0.945 29 H 0.054 0.946 30 H 0.055 0.945 31 H 0.034 0.966 32 H 0.045 0.955 33 H 0.253 0.747 34 H 0.104 0.896 35 H 0.037 0.963 36 H 0.125 0.875 37 H 0.125 0.875 38 H 0.121 0.879 39 H 0.073 0.927 40 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.155 -0.303 -6.774 10.606 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.160 4.160 3 C -0.179 4.179 4 C 0.023 3.977 5 N -0.291 5.291 6 C -0.378 4.378 7 H 0.072 0.928 8 C -0.171 4.171 9 N -0.527 5.527 10 Si 0.724 3.276 11 H -0.202 1.202 12 H -0.221 1.221 13 H -0.213 1.213 14 C 0.052 3.948 15 C -0.064 4.064 16 C -0.133 4.133 17 C -0.141 4.141 18 C -0.142 4.142 19 C -0.029 4.029 20 C 0.017 3.983 21 O -0.187 6.187 22 C 0.092 3.908 23 O -0.236 6.236 24 H 0.064 0.936 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.073 0.927 28 H 0.074 0.926 29 H 0.073 0.927 30 H 0.074 0.926 31 H 0.052 0.948 32 H 0.063 0.937 33 H 0.063 0.937 34 H 0.121 0.879 35 H 0.055 0.945 36 H 0.143 0.857 37 H 0.143 0.857 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -7.963 -0.133 -6.516 10.290 hybrid contribution -0.174 1.142 0.795 1.403 sum -8.137 1.010 -5.721 9.998 Atomic orbital electron populations 1.21758 0.96834 1.00474 1.01538 1.21493 0.94966 0.98387 1.01127 1.22235 0.99552 0.94382 1.01705 1.20905 0.91145 0.86828 0.98789 1.43687 1.75586 1.08004 1.01827 1.18891 1.03076 1.22248 0.93597 0.92762 1.25041 0.94064 1.00394 0.97630 1.69978 1.02805 1.37812 1.42134 0.86370 0.77351 0.82735 0.81164 1.20220 1.22127 1.21328 1.19992 0.92025 0.96552 0.86267 1.20358 1.01268 0.91116 0.93701 1.20795 0.95346 0.99792 0.97337 1.20712 0.97867 0.94423 1.01092 1.19772 1.01353 0.96647 0.96473 1.19893 0.97648 0.87924 0.97451 1.19551 0.93568 0.94724 0.90481 1.87670 1.65206 1.18366 1.47493 1.25525 0.79762 0.87358 0.98124 1.87258 1.34833 1.36539 1.64971 0.93623 0.93117 0.93110 0.92735 0.92604 0.92705 0.92621 0.94785 0.93687 0.93699 0.87881 0.94452 0.85681 0.85741 0.86125 0.90964 0.86288 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.95 9.91 37.16 0.37 -1.58 16 2 C -0.12 -1.80 5.93 -26.73 -0.16 -1.96 16 3 C -0.14 -2.55 5.51 -26.73 -0.15 -2.70 16 4 C 0.15 3.11 5.72 -4.05 -0.02 3.09 16 5 N -0.57 -13.99 2.41 -174.62 -0.42 -14.41 16 6 C -0.25 -6.76 9.41 -15.06 -0.14 -6.90 16 7 H 0.05 1.53 7.91 -52.49 -0.42 1.12 16 8 C 0.03 0.81 4.78 -17.43 -0.08 0.72 16 9 N -0.89 -25.14 11.51 55.49 0.64 -24.50 16 10 Si 0.89 22.11 29.44 -169.99 -5.00 17.11 16 11 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 12 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.58 16 14 C 0.18 4.12 5.46 -5.19 -0.03 4.09 16 15 C -0.06 -1.25 5.32 -104.51 -0.56 -1.80 16 16 C -0.11 -1.93 8.63 -39.57 -0.34 -2.27 16 17 C -0.12 -1.84 10.04 -39.58 -0.40 -2.24 16 18 C -0.12 -2.00 10.06 -39.47 -0.40 -2.40 16 19 C 0.01 0.29 7.15 -39.08 -0.28 0.01 16 20 C 0.06 1.34 6.85 -39.09 -0.27 1.07 16 21 O -0.27 -6.13 11.01 -45.67 -0.50 -6.64 16 22 C 0.20 3.59 8.89 101.05 0.90 4.48 16 23 O -0.32 -5.93 11.40 -45.69 -0.52 -6.45 16 24 H 0.04 0.52 8.14 -51.93 -0.42 0.09 16 25 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 26 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 27 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 28 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.05 1.12 8.14 -51.93 -0.42 0.70 16 30 H 0.06 1.04 6.92 -51.92 -0.36 0.68 16 31 H 0.03 0.66 7.83 -51.93 -0.41 0.25 16 32 H 0.04 0.97 8.08 -51.93 -0.42 0.55 16 33 H 0.25 6.97 8.31 -40.82 -0.34 6.63 16 34 H 0.10 2.74 5.58 -51.93 -0.29 2.45 16 35 H 0.04 0.80 7.72 -51.93 -0.40 0.40 16 36 H 0.13 1.87 8.03 -52.48 -0.42 1.44 16 37 H 0.12 1.44 8.06 -52.49 -0.42 1.02 16 38 H 0.12 1.65 8.06 -52.49 -0.42 1.22 16 39 H 0.07 1.09 8.14 -51.93 -0.42 0.67 16 40 H 0.12 1.78 8.14 -51.93 -0.42 1.36 16 LS Contribution 332.39 15.07 5.01 5.01 Total: -1.00 -29.95 332.39 -8.43 -38.38 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -6.08 Total: -0.12 kcal Atomic # 6 Polarization: -6.83 SS G_CDS: -1.56 Total: -8.38 kcal Atomic # 7 Polarization: -39.12 SS G_CDS: 0.22 Total: -38.91 kcal Atomic # 8 Polarization: -12.07 SS G_CDS: -1.02 Total: -13.09 kcal Atomic # 14 Polarization: 22.11 SS G_CDS: -5.00 Total: 17.11 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.95 -8.43 -38.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141958440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.233 kcal (2) G-P(sol) polarization free energy of solvation -29.952 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.384 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds