Wall clock time and date at job start Mon Mar 30 2020 01:54:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.53003 * 109.47332 * 2 1 4 4 C 1.53000 * 109.47682 * 180.02562 * 3 2 1 5 5 N 1.46494 * 109.47286 * 180.02562 * 4 3 2 6 6 C 1.36937 * 120.00267 * 84.69436 * 5 4 3 7 7 H 1.07997 * 120.00373 * 320.92844 * 6 5 4 8 8 C 1.38814 * 119.99951 * 140.92510 * 6 5 4 9 9 N 1.31624 * 119.99910 * 339.72507 * 8 6 5 10 10 Si 1.86799 * 120.00145 * 159.72455 * 8 6 5 11 11 H 1.48503 * 109.46815 * 359.97438 * 10 8 6 12 12 H 1.48494 * 109.47021 * 119.99842 * 10 8 6 13 13 H 1.48499 * 109.47182 * 240.00474 * 10 8 6 14 14 C 1.46500 * 119.99934 * 264.69551 * 5 4 3 15 15 C 1.50701 * 109.47173 * 90.00050 * 14 5 4 16 16 C 1.38286 * 119.98543 * 259.72318 * 15 14 5 17 17 C 1.38208 * 120.14462 * 179.67858 * 16 15 14 18 18 C 1.38283 * 120.14116 * 0.65280 * 17 16 15 19 19 C 1.38506 * 120.02765 * 359.64007 * 18 17 16 20 20 C 1.38499 * 119.98779 * 80.00405 * 15 14 5 21 21 O 1.36496 * 131.53905 * 0.02562 * 20 15 14 22 22 C 1.43989 * 105.48610 * 162.68743 * 21 20 15 23 23 O 1.36501 * 131.53791 * 180.02562 * 19 18 17 24 24 H 1.08996 * 109.46800 * 179.97438 * 1 2 3 25 25 H 1.08996 * 109.47221 * 300.00465 * 1 2 3 26 26 H 1.09002 * 109.46575 * 60.00132 * 1 2 3 27 27 H 1.09004 * 109.47500 * 240.00104 * 2 1 3 28 28 H 1.09001 * 109.47467 * 119.99686 * 2 1 3 29 29 H 1.09005 * 109.47245 * 59.99495 * 3 2 1 30 30 H 1.09007 * 109.47001 * 300.00205 * 3 2 1 31 31 H 1.08996 * 109.47141 * 59.99369 * 4 3 2 32 32 H 1.09002 * 109.46304 * 299.99916 * 4 3 2 33 33 H 0.96996 * 119.99685 * 179.97438 * 9 8 6 34 34 H 1.09003 * 109.47342 * 210.00113 * 14 5 4 35 35 H 1.08998 * 109.47117 * 330.00032 * 14 5 4 36 36 H 1.08005 * 119.92747 * 0.02562 * 16 15 14 37 37 H 1.07996 * 119.92912 * 180.28899 * 17 16 15 38 38 H 1.07994 * 119.98677 * 179.65690 * 18 17 16 39 39 H 1.09006 * 110.56901 * 268.55849 * 22 21 20 40 40 H 1.08998 * 110.70106 * 145.75821 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4426 -0.0006 5 7 4.0583 2.8238 0.0000 6 6 4.1836 3.5052 1.1811 7 1 3.4386 3.3877 1.9540 8 6 5.2685 4.3469 1.3850 9 7 6.3574 4.2046 0.6595 10 14 5.1829 5.6817 2.6891 11 1 3.8595 5.6329 3.3611 12 1 6.2561 5.4634 3.6919 13 1 5.3646 7.0100 2.0506 14 6 4.4125 3.4760 -1.2631 15 6 3.2001 4.1713 -1.8267 16 6 2.4705 3.5761 -2.8395 17 6 1.3542 4.2078 -3.3543 18 6 0.9698 5.4439 -2.8680 19 6 1.6992 6.0487 -1.8578 20 6 2.8203 5.4088 -1.3341 21 8 3.3597 6.2003 -0.3616 22 6 2.7999 7.5093 -0.5769 23 8 1.5365 7.2408 -1.2131 24 1 -0.3633 -1.0276 -0.0005 25 1 -0.3633 0.5139 0.8899 26 1 -0.3632 0.5138 -0.8900 27 1 1.8934 -0.5138 -0.8900 28 1 1.8934 -0.5138 0.8900 29 1 1.6766 1.9564 0.8900 30 1 1.6767 1.9564 -0.8900 31 1 3.9330 0.9288 -0.8908 32 1 3.9336 0.9286 0.8892 33 1 7.1152 4.7931 0.8017 34 1 5.2011 4.2074 -1.0858 35 1 4.7644 2.7271 -1.9726 36 1 2.7705 2.6130 -3.2253 37 1 0.7843 3.7377 -4.1420 38 1 0.1003 5.9377 -3.2759 39 1 3.4418 8.0971 -1.2332 40 1 2.6493 8.0247 0.3716 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001141958440.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:41 Heat of formation + Delta-G solvation = -41.467562 kcal Electronic energy + Delta-G solvation = -22689.337150 eV Core-core repulsion = 19469.920640 eV Total energy + Delta-G solvation = -3219.416510 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.92601 -39.12605 -37.66869 -37.00380 -35.49189 -33.33509 -31.98828 -30.72630 -29.33750 -27.37041 -26.62685 -25.43979 -23.65980 -23.08053 -21.97161 -21.68989 -18.90187 -18.76607 -18.27227 -17.84331 -17.07889 -16.74154 -16.24601 -15.56070 -15.34170 -15.23036 -15.12399 -14.81436 -14.47133 -14.21926 -13.77101 -13.67442 -13.63273 -13.21235 -13.17394 -12.93473 -12.79016 -12.55587 -12.34257 -12.09375 -11.90264 -11.86013 -11.70471 -11.66088 -11.54480 -11.20139 -10.45977 -9.44619 -8.85928 -8.50254 -7.79522 -5.41697 0.37107 0.47386 1.37196 1.40994 1.50144 2.01702 2.50802 2.74565 2.81030 3.32931 3.70406 3.82102 3.82937 4.01483 4.19687 4.25015 4.32509 4.34147 4.46441 4.49852 4.51753 4.60366 4.69645 4.85869 4.93004 5.03755 5.09624 5.12219 5.22280 5.27201 5.35812 5.44689 5.54312 5.54472 5.56820 5.68210 5.73075 5.76118 5.83678 6.37693 6.52030 7.22124 7.90027 8.41433 9.15946 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.011681 B = 0.009898 C = 0.006426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2396.471865 B = 2828.089211 C = 4356.231815 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.116 4.116 3 C -0.122 4.122 4 C 0.147 3.853 5 N -0.588 5.588 6 C -0.249 4.249 7 H 0.034 0.966 8 C -0.006 4.006 9 N -0.911 5.911 10 Si 0.936 3.064 11 H -0.279 1.279 12 H -0.293 1.293 13 H -0.282 1.282 14 C 0.185 3.815 15 C -0.083 4.083 16 C -0.110 4.110 17 C -0.103 4.103 18 C -0.115 4.115 19 C -0.002 4.002 20 C 0.027 3.973 21 O -0.314 6.314 22 C 0.198 3.802 23 O -0.324 6.324 24 H 0.068 0.932 25 H 0.041 0.959 26 H 0.055 0.945 27 H 0.072 0.928 28 H 0.054 0.946 29 H 0.024 0.976 30 H 0.055 0.945 31 H 0.052 0.948 32 H 0.028 0.972 33 H 0.249 0.751 34 H 0.064 0.936 35 H 0.047 0.953 36 H 0.148 0.852 37 H 0.173 0.827 38 H 0.154 0.846 39 H 0.094 0.906 40 H 0.139 0.861 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.471 -1.009 -8.807 13.719 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.154 4.154 3 C -0.162 4.162 4 C 0.022 3.978 5 N -0.308 5.308 6 C -0.379 4.379 7 H 0.052 0.948 8 C -0.204 4.204 9 N -0.555 5.555 10 Si 0.765 3.235 11 H -0.204 1.204 12 H -0.221 1.221 13 H -0.208 1.208 14 C 0.059 3.941 15 C -0.087 4.087 16 C -0.129 4.129 17 C -0.121 4.121 18 C -0.133 4.133 19 C -0.046 4.046 20 C -0.017 4.017 21 O -0.230 6.230 22 C 0.086 3.914 23 O -0.241 6.241 24 H 0.087 0.913 25 H 0.060 0.940 26 H 0.074 0.926 27 H 0.090 0.910 28 H 0.073 0.927 29 H 0.043 0.957 30 H 0.074 0.926 31 H 0.070 0.930 32 H 0.046 0.954 33 H 0.059 0.941 34 H 0.082 0.918 35 H 0.065 0.935 36 H 0.166 0.834 37 H 0.191 0.809 38 H 0.171 0.829 39 H 0.111 0.889 40 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -10.304 -0.841 -8.564 13.425 hybrid contribution 0.478 1.342 1.329 1.948 sum -9.826 0.501 -7.236 12.213 Atomic orbital electron populations 1.21723 0.95223 1.01942 1.01370 1.21450 0.96325 0.95643 1.01991 1.22009 0.97369 0.96688 1.00115 1.21014 0.92818 0.85191 0.98777 1.43851 1.76097 1.09318 1.01536 1.18819 1.02185 1.22574 0.94344 0.94832 1.25455 0.93908 1.01805 0.99214 1.70070 1.03225 1.38586 1.43643 0.85712 0.76933 0.81292 0.79540 1.20446 1.22074 1.20836 1.19729 0.92479 0.95878 0.86005 1.20268 1.01058 0.91604 0.95746 1.21085 0.95368 1.00509 0.95900 1.21227 0.96678 0.93397 1.00814 1.20333 1.01400 0.96818 0.94791 1.20253 0.97765 0.88071 0.98485 1.19910 0.95053 0.95563 0.91219 1.87583 1.66353 1.20314 1.48724 1.25870 0.79757 0.86087 0.99677 1.87218 1.35267 1.36437 1.65170 0.91339 0.94014 0.92594 0.90955 0.92681 0.95745 0.92644 0.92961 0.95393 0.94119 0.91805 0.93473 0.83402 0.80918 0.82869 0.88888 0.84397 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 9.91 71.98 0.71 -2.69 16 2 C -0.12 -3.18 5.93 30.59 0.18 -3.00 16 3 C -0.12 -4.40 5.51 30.60 0.17 -4.23 16 4 C 0.15 6.16 5.72 86.38 0.49 6.66 16 5 N -0.59 -29.47 2.41 -706.36 -1.70 -31.17 16 6 C -0.25 -14.05 9.41 84.03 0.79 -13.26 16 7 H 0.03 2.00 7.91 -2.91 -0.02 1.98 16 8 C -0.01 -0.33 4.78 84.86 0.41 0.08 16 9 N -0.91 -53.74 11.51 21.65 0.25 -53.49 16 10 Si 0.94 46.79 29.44 68.60 2.02 48.81 16 11 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 12 H -0.29 -14.49 7.11 99.48 0.71 -13.78 16 13 H -0.28 -13.73 7.11 99.48 0.71 -13.03 16 14 C 0.19 8.74 5.46 85.63 0.47 9.21 16 15 C -0.08 -3.41 5.32 -19.79 -0.11 -3.51 16 16 C -0.11 -3.41 8.63 22.27 0.19 -3.22 16 17 C -0.10 -2.62 10.04 22.27 0.22 -2.39 16 18 C -0.11 -3.29 10.06 22.34 0.22 -3.07 16 19 C 0.00 -0.07 7.15 22.59 0.16 0.09 16 20 C 0.03 1.18 6.85 22.59 0.15 1.34 16 21 O -0.31 -14.50 11.01 -76.00 -0.84 -15.34 16 22 C 0.20 6.92 8.89 113.37 1.01 7.93 16 23 O -0.32 -11.76 11.40 -76.06 -0.87 -12.62 16 24 H 0.07 1.31 8.14 -2.39 -0.02 1.29 16 25 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 27 H 0.07 1.75 8.14 -2.38 -0.02 1.73 16 28 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.02 1.00 8.14 -2.38 -0.02 0.98 16 30 H 0.05 1.99 6.92 -2.38 -0.02 1.97 16 31 H 0.05 1.97 7.83 -2.39 -0.02 1.95 16 32 H 0.03 1.23 8.08 -2.39 -0.02 1.21 16 33 H 0.25 14.28 8.31 -92.71 -0.77 13.51 16 34 H 0.06 3.56 5.58 -2.39 -0.01 3.54 16 35 H 0.05 2.04 7.72 -2.39 -0.02 2.02 16 36 H 0.15 3.84 8.03 -2.91 -0.02 3.82 16 37 H 0.17 2.78 8.06 -2.91 -0.02 2.76 16 38 H 0.15 3.40 8.06 -2.91 -0.02 3.37 16 39 H 0.09 2.79 8.14 -2.38 -0.02 2.77 16 40 H 0.14 4.11 8.14 -2.39 -0.02 4.09 16 Total: -1.00 -68.09 332.39 4.96 -63.13 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 1.02 Total: 10.77 kcal Atomic # 6 Polarization: -15.16 SS G_CDS: 5.08 Total: -10.08 kcal Atomic # 7 Polarization: -83.21 SS G_CDS: -1.45 Total: -84.66 kcal Atomic # 8 Polarization: -26.26 SS G_CDS: -1.70 Total: -27.96 kcal Atomic # 14 Polarization: 46.79 SS G_CDS: 2.02 Total: 48.81 kcal Total: -68.09 4.96 -63.13 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001141958440.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.660 kcal (2) G-P(sol) polarization free energy of solvation -68.089 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.428 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.961 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.128 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.468 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds