Wall clock time and date at job start Mon Mar 30 2020 01:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47575 * 2 1 4 4 C 1.53004 * 109.47575 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47238 * 180.02562 * 4 3 2 6 6 C 1.37096 * 119.99699 * 264.53971 * 5 4 3 7 7 H 1.08004 * 120.00106 * 146.02030 * 6 5 4 8 8 C 1.38953 * 120.00101 * 326.01302 * 6 5 4 9 9 N 1.31414 * 119.99850 * 337.80793 * 8 6 5 10 10 Si 1.86792 * 120.00092 * 157.81022 * 8 6 5 11 11 H 1.48502 * 109.47498 * 90.00155 * 10 8 6 12 12 H 1.48502 * 109.47354 * 210.00211 * 10 8 6 13 13 H 1.48504 * 109.47198 * 330.00051 * 10 8 6 14 14 C 1.34780 * 120.00253 * 84.53934 * 5 4 3 15 15 O 1.21293 * 119.99896 * 359.97438 * 14 5 4 16 16 C 1.50700 * 119.99761 * 179.97438 * 14 5 4 17 17 C 1.50704 * 109.46951 * 179.97438 * 16 14 5 18 18 C 1.38287 * 119.97438 * 270.02497 * 17 16 14 19 19 C 1.38245 * 120.11221 * 180.02562 * 18 17 16 20 20 C 1.38165 * 120.05569 * 359.68516 * 19 18 17 21 21 C 1.38714 * 119.94281 * 0.56366 * 20 19 18 22 22 O 1.35900 * 120.05733 * 179.72644 * 21 20 19 23 23 C 1.38125 * 119.97116 * 90.00014 * 17 16 14 24 24 H 1.09000 * 109.46547 * 59.99967 * 1 2 3 25 25 H 1.08998 * 109.47262 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46844 * 300.00486 * 1 2 3 27 27 H 1.09004 * 109.47305 * 239.99421 * 2 1 3 28 28 H 1.09004 * 109.47017 * 120.00142 * 2 1 3 29 29 H 1.09004 * 109.47277 * 59.99403 * 3 2 1 30 30 H 1.09004 * 109.47064 * 300.00113 * 3 2 1 31 31 H 1.08999 * 109.46844 * 59.99514 * 4 3 2 32 32 H 1.09000 * 109.46547 * 300.00033 * 4 3 2 33 33 H 0.96996 * 120.00086 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47040 * 60.00230 * 16 14 5 35 35 H 1.08994 * 109.47266 * 300.00037 * 16 14 5 36 36 H 1.08002 * 119.94259 * 359.97438 * 18 17 16 37 37 H 1.07995 * 119.97181 * 179.97438 * 19 18 17 38 38 H 1.07994 * 120.03033 * 180.29962 * 20 19 18 39 39 H 0.96705 * 113.99587 * 269.72889 * 22 21 20 40 40 H 1.08000 * 120.02229 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5702 1.4424 0.0006 5 7 4.0585 2.8236 0.0013 6 6 4.3940 3.4325 -1.1804 7 1 4.2245 4.4913 -1.3094 8 6 4.9523 2.6874 -2.2119 9 7 5.5559 1.5502 -1.9489 10 14 4.8447 3.3024 -3.9724 11 1 6.0283 4.1466 -4.2751 12 1 4.8129 2.1436 -4.9005 13 1 3.6073 4.1060 -4.1413 14 6 4.1780 3.4956 1.1634 15 8 3.8807 2.9571 2.2088 16 6 4.6809 4.9163 1.1640 17 6 4.7196 5.4348 2.5784 18 6 3.6132 6.0701 3.1119 19 6 3.6457 6.5474 4.4090 20 6 4.7822 6.3849 5.1778 21 6 5.8951 5.7527 4.6433 22 8 7.0161 5.5966 5.3956 23 6 5.8600 5.2748 3.3411 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9338 0.9284 -0.8891 32 1 3.9330 0.9287 0.8909 33 1 5.9453 1.0299 -2.6690 34 1 4.0134 5.5382 0.5675 35 1 5.6836 4.9469 0.7378 36 1 2.7224 6.1943 2.5140 37 1 2.7805 7.0435 4.8232 38 1 4.8055 6.7536 6.1925 39 1 7.6451 6.3273 5.3204 40 1 6.7238 4.7786 2.9239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001142851312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:06 Heat of formation + Delta-G solvation = -68.551489 kcal Electronic energy + Delta-G solvation = -21418.398423 eV Core-core repulsion = 18197.807466 eV Total energy + Delta-G solvation = -3220.590957 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -39.59145 -38.44954 -36.54927 -35.24791 -33.93314 -32.08616 -31.49743 -29.59309 -28.70711 -26.74759 -24.88833 -22.90467 -22.27435 -21.22265 -20.36450 -19.08879 -17.84488 -16.73617 -16.04045 -15.90053 -15.51928 -14.92197 -14.74330 -14.55603 -14.17114 -13.89933 -13.53064 -13.06424 -12.77837 -12.65872 -12.22712 -12.07781 -11.80868 -11.69453 -11.39937 -11.37554 -11.22102 -11.02514 -10.79446 -10.57165 -10.48517 -10.34125 -10.22149 -10.16130 -9.70683 -9.10241 -8.63682 -8.39676 -8.14922 -7.53044 -6.40942 -4.07297 1.57211 1.67599 3.07528 3.18639 3.22061 3.89033 3.94802 4.08989 4.38687 4.81906 5.00010 5.16892 5.20867 5.43065 5.50191 5.56062 5.66335 5.67941 5.82466 5.96169 6.08097 6.13607 6.25560 6.25949 6.33665 6.40926 6.42751 6.49017 6.63220 6.67951 6.70787 6.75644 6.86445 7.00034 7.11250 7.17570 7.34886 7.49060 7.85025 7.91199 8.35340 9.05337 9.52143 9.95838 10.60163 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014883 B = 0.005256 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.892324 B = 5325.635712 C = 6457.463374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.119 4.119 3 C -0.128 4.128 4 C 0.116 3.884 5 N -0.438 5.438 6 C -0.342 4.342 7 H 0.090 0.910 8 C 0.044 3.956 9 N -0.856 5.856 10 Si 0.911 3.089 11 H -0.277 1.277 12 H -0.282 1.282 13 H -0.269 1.269 14 C 0.471 3.529 15 O -0.598 6.598 16 C -0.089 4.089 17 C -0.026 4.026 18 C -0.117 4.117 19 C -0.107 4.107 20 C -0.158 4.158 21 C 0.099 3.901 22 O -0.501 6.501 23 C -0.131 4.131 24 H 0.050 0.950 25 H 0.047 0.953 26 H 0.050 0.950 27 H 0.058 0.942 28 H 0.057 0.943 29 H 0.053 0.947 30 H 0.057 0.943 31 H 0.106 0.894 32 H 0.050 0.950 33 H 0.270 0.730 34 H 0.089 0.911 35 H 0.097 0.903 36 H 0.120 0.880 37 H 0.121 0.879 38 H 0.121 0.879 39 H 0.384 0.616 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.459 6.899 4.553 8.624 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.157 4.157 3 C -0.166 4.166 4 C -0.008 4.008 5 N -0.156 5.156 6 C -0.470 4.470 7 H 0.108 0.892 8 C -0.162 4.162 9 N -0.492 5.492 10 Si 0.737 3.263 11 H -0.202 1.202 12 H -0.207 1.207 13 H -0.193 1.193 14 C 0.259 3.741 15 O -0.484 6.484 16 C -0.128 4.128 17 C -0.027 4.027 18 C -0.135 4.135 19 C -0.125 4.125 20 C -0.176 4.176 21 C 0.055 3.945 22 O -0.310 6.310 23 C -0.149 4.149 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.069 0.931 27 H 0.077 0.923 28 H 0.076 0.924 29 H 0.071 0.929 30 H 0.076 0.924 31 H 0.124 0.876 32 H 0.068 0.932 33 H 0.080 0.920 34 H 0.107 0.893 35 H 0.115 0.885 36 H 0.138 0.862 37 H 0.139 0.861 38 H 0.139 0.861 39 H 0.238 0.762 40 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.765 5.917 5.099 8.286 hybrid contribution 0.279 0.611 -1.156 1.337 sum -2.486 6.527 3.944 8.021 Atomic orbital electron populations 1.21756 0.96666 1.00653 1.01448 1.21428 0.94946 0.97794 1.01575 1.21905 0.98007 0.95464 1.01270 1.21415 0.91014 0.84884 1.03487 1.43469 1.55301 1.12004 1.04871 1.19419 1.41477 0.95386 0.90681 0.89239 1.25316 0.94214 0.96325 1.00381 1.69949 1.31187 1.14929 1.33179 0.86200 0.78972 0.78600 0.82511 1.20244 1.20700 1.19326 1.20171 0.81867 0.88218 0.83818 1.90560 1.55479 1.70590 1.31740 1.20504 1.03997 0.95904 0.92426 1.19518 0.92785 0.94624 0.95763 1.21019 0.97836 0.98982 0.95654 1.20897 0.97440 1.00045 0.94106 1.21240 0.94240 1.01975 1.00191 1.18405 0.87400 0.98935 0.89798 1.84847 1.30369 1.48139 1.67650 1.21278 0.99541 1.00923 0.93166 0.93072 0.93437 0.93089 0.92291 0.92421 0.92863 0.92444 0.87595 0.93166 0.91998 0.89258 0.88522 0.86156 0.86091 0.86123 0.76158 0.85684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.14 9.91 37.16 0.37 -1.77 16 2 C -0.12 -2.05 5.93 -26.73 -0.16 -2.21 16 3 C -0.13 -2.64 5.50 -26.73 -0.15 -2.78 16 4 C 0.12 2.78 4.90 -4.04 -0.02 2.76 16 5 N -0.44 -10.92 2.56 -114.81 -0.29 -11.22 16 6 C -0.34 -8.42 8.70 -14.93 -0.13 -8.55 16 7 H 0.09 2.07 6.97 -52.48 -0.37 1.71 16 8 C 0.04 1.08 4.92 -17.47 -0.09 0.99 16 9 N -0.86 -22.21 11.34 55.50 0.63 -21.58 16 10 Si 0.91 18.88 29.61 -169.99 -5.03 13.85 16 11 H -0.28 -5.70 7.11 56.52 0.40 -5.29 16 12 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 13 H -0.27 -5.48 7.11 56.52 0.40 -5.08 16 14 C 0.47 11.42 7.59 -10.98 -0.08 11.34 16 15 O -0.60 -16.05 15.71 5.55 0.09 -15.96 16 16 C -0.09 -1.75 4.48 -29.03 -0.13 -1.88 16 17 C -0.03 -0.48 4.37 -104.64 -0.46 -0.94 16 18 C -0.12 -1.93 9.70 -39.56 -0.38 -2.31 16 19 C -0.11 -1.54 10.04 -39.61 -0.40 -1.94 16 20 C -0.16 -2.30 9.99 -39.43 -0.39 -2.69 16 21 C 0.10 1.58 6.70 -39.22 -0.26 1.32 16 22 O -0.50 -7.05 13.50 -19.43 -0.26 -7.31 16 23 C -0.13 -2.33 9.64 -39.43 -0.38 -2.71 16 24 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 25 H 0.05 0.60 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.72 8.14 -51.93 -0.42 0.30 16 27 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 28 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 29 H 0.05 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 31 H 0.11 2.68 5.35 -51.93 -0.28 2.40 16 32 H 0.05 1.27 7.59 -51.93 -0.39 0.88 16 33 H 0.27 6.60 8.31 -40.82 -0.34 6.26 16 34 H 0.09 1.61 7.59 -51.93 -0.39 1.21 16 35 H 0.10 1.88 8.04 -51.93 -0.42 1.46 16 36 H 0.12 1.82 8.06 -52.49 -0.42 1.40 16 37 H 0.12 1.38 8.06 -52.49 -0.42 0.96 16 38 H 0.12 1.46 8.06 -52.49 -0.42 1.04 16 39 H 0.38 3.24 9.06 45.56 0.41 3.65 16 40 H 0.13 2.21 8.06 -52.49 -0.42 1.78 16 LS Contribution 338.56 15.07 5.10 5.10 Total: -1.00 -30.56 338.56 -7.65 -38.21 By element: Atomic # 1 Polarization: 15.51 SS G_CDS: -5.22 Total: 10.29 kcal Atomic # 6 Polarization: -8.72 SS G_CDS: -2.66 Total: -11.38 kcal Atomic # 7 Polarization: -33.13 SS G_CDS: 0.34 Total: -32.80 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.18 Total: -23.28 kcal Atomic # 14 Polarization: 18.88 SS G_CDS: -5.03 Total: 13.85 kcal Total LS contribution 5.10 Total: 5.10 kcal Total: -30.56 -7.65 -38.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142851312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.339 kcal (2) G-P(sol) polarization free energy of solvation -30.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.897 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.212 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.551 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds