Wall clock time and date at job start Mon Mar 30 2020 01:56:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52995 * 109.47575 * 2 1 4 4 C 1.53004 * 109.47575 * 179.97438 * 3 2 1 5 5 N 1.46494 * 109.47238 * 180.02562 * 4 3 2 6 6 C 1.37096 * 119.99699 * 264.53971 * 5 4 3 7 7 H 1.08004 * 120.00106 * 146.02030 * 6 5 4 8 8 C 1.38953 * 120.00101 * 326.01302 * 6 5 4 9 9 N 1.31414 * 119.99850 * 337.80793 * 8 6 5 10 10 Si 1.86792 * 120.00092 * 157.81022 * 8 6 5 11 11 H 1.48502 * 109.47498 * 90.00155 * 10 8 6 12 12 H 1.48502 * 109.47354 * 210.00211 * 10 8 6 13 13 H 1.48504 * 109.47198 * 330.00051 * 10 8 6 14 14 C 1.34780 * 120.00253 * 84.53934 * 5 4 3 15 15 O 1.21293 * 119.99896 * 359.97438 * 14 5 4 16 16 C 1.50700 * 119.99761 * 179.97438 * 14 5 4 17 17 C 1.50704 * 109.46951 * 179.97438 * 16 14 5 18 18 C 1.38287 * 119.97438 * 270.02497 * 17 16 14 19 19 C 1.38245 * 120.11221 * 180.02562 * 18 17 16 20 20 C 1.38165 * 120.05569 * 359.68516 * 19 18 17 21 21 C 1.38714 * 119.94281 * 0.56366 * 20 19 18 22 22 O 1.35900 * 120.05733 * 179.72644 * 21 20 19 23 23 C 1.38125 * 119.97116 * 90.00014 * 17 16 14 24 24 H 1.09000 * 109.46547 * 59.99967 * 1 2 3 25 25 H 1.08998 * 109.47262 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.46844 * 300.00486 * 1 2 3 27 27 H 1.09004 * 109.47305 * 239.99421 * 2 1 3 28 28 H 1.09004 * 109.47017 * 120.00142 * 2 1 3 29 29 H 1.09004 * 109.47277 * 59.99403 * 3 2 1 30 30 H 1.09004 * 109.47064 * 300.00113 * 3 2 1 31 31 H 1.08999 * 109.46844 * 59.99514 * 4 3 2 32 32 H 1.09000 * 109.46547 * 300.00033 * 4 3 2 33 33 H 0.96996 * 120.00086 * 179.97438 * 9 8 6 34 34 H 1.09005 * 109.47040 * 60.00230 * 16 14 5 35 35 H 1.08994 * 109.47266 * 300.00037 * 16 14 5 36 36 H 1.08002 * 119.94259 * 359.97438 * 18 17 16 37 37 H 1.07995 * 119.97181 * 179.97438 * 19 18 17 38 38 H 1.07994 * 120.03033 * 180.29962 * 20 19 18 39 39 H 0.96705 * 113.99587 * 269.72889 * 22 21 20 40 40 H 1.08000 * 120.02229 * 0.02562 * 23 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 6 3.5702 1.4424 0.0006 5 7 4.0585 2.8236 0.0013 6 6 4.3940 3.4325 -1.1804 7 1 4.2245 4.4913 -1.3094 8 6 4.9523 2.6874 -2.2119 9 7 5.5559 1.5502 -1.9489 10 14 4.8447 3.3024 -3.9724 11 1 6.0283 4.1466 -4.2751 12 1 4.8129 2.1436 -4.9005 13 1 3.6073 4.1060 -4.1413 14 6 4.1780 3.4956 1.1634 15 8 3.8807 2.9571 2.2088 16 6 4.6809 4.9163 1.1640 17 6 4.7196 5.4348 2.5784 18 6 3.6132 6.0701 3.1119 19 6 3.6457 6.5474 4.4090 20 6 4.7822 6.3849 5.1778 21 6 5.8951 5.7527 4.6433 22 8 7.0161 5.5966 5.3956 23 6 5.8600 5.2748 3.3411 24 1 -0.3632 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8934 -0.5139 -0.8900 28 1 1.8934 -0.5139 0.8900 29 1 1.6768 1.9563 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9338 0.9284 -0.8891 32 1 3.9330 0.9287 0.8909 33 1 5.9453 1.0299 -2.6690 34 1 4.0134 5.5382 0.5675 35 1 5.6836 4.9469 0.7378 36 1 2.7224 6.1943 2.5140 37 1 2.7805 7.0435 4.8232 38 1 4.8055 6.7536 6.1925 39 1 7.6451 6.3273 5.3204 40 1 6.7238 4.7786 2.9239 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001142851312.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:06 Heat of formation + Delta-G solvation = -86.674312 kcal Electronic energy + Delta-G solvation = -21419.184288 eV Core-core repulsion = 18197.807466 eV Total energy + Delta-G solvation = -3221.376822 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.00189 -40.11532 -37.81038 -37.00025 -35.57774 -33.55705 -33.32019 -30.85934 -30.23548 -28.22895 -26.76292 -24.47430 -23.49168 -22.55924 -21.93126 -20.96109 -19.16427 -18.42447 -17.77185 -17.27191 -16.89931 -16.49940 -16.26625 -16.02409 -15.82282 -15.61390 -14.74160 -14.57379 -14.41886 -14.00624 -13.82724 -13.57957 -13.19249 -13.09613 -13.03800 -12.95073 -12.73340 -12.50310 -12.32426 -12.15434 -12.03569 -11.96176 -11.80649 -11.44243 -11.37285 -10.98056 -10.41640 -9.73148 -9.50899 -9.44183 -8.30227 -6.03351 0.35113 0.42660 1.42309 1.49826 1.60948 2.03856 2.32509 2.67723 3.01483 3.16578 3.32368 3.87302 3.98998 4.06153 4.14514 4.23084 4.29614 4.41857 4.45492 4.48843 4.63505 4.70626 4.78514 4.83360 4.87796 4.98509 5.02849 5.06660 5.12061 5.17222 5.35532 5.42204 5.45973 5.47792 5.48382 5.57187 5.70856 5.96892 6.01811 6.43282 6.88649 7.13129 7.60677 8.04844 8.72320 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.014883 B = 0.005256 C = 0.004335 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1880.892324 B = 5325.635712 C = 6457.463374 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.116 4.116 3 C -0.114 4.114 4 C 0.116 3.884 5 N -0.450 5.450 6 C -0.357 4.357 7 H 0.103 0.897 8 C 0.003 3.997 9 N -0.892 5.892 10 Si 0.982 3.018 11 H -0.271 1.271 12 H -0.283 1.283 13 H -0.259 1.259 14 C 0.457 3.543 15 O -0.631 6.631 16 C -0.077 4.077 17 C -0.049 4.049 18 C -0.130 4.130 19 C -0.099 4.099 20 C -0.155 4.155 21 C 0.097 3.903 22 O -0.510 6.510 23 C -0.157 4.157 24 H 0.057 0.943 25 H 0.070 0.930 26 H 0.051 0.949 27 H 0.061 0.939 28 H 0.054 0.946 29 H 0.038 0.962 30 H 0.056 0.944 31 H 0.093 0.907 32 H 0.023 0.977 33 H 0.272 0.728 34 H 0.106 0.894 35 H 0.093 0.907 36 H 0.130 0.870 37 H 0.158 0.842 38 H 0.152 0.848 39 H 0.408 0.592 40 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.671 8.382 4.576 10.231 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.154 4.154 3 C -0.152 4.152 4 C -0.007 4.007 5 N -0.168 5.168 6 C -0.485 4.485 7 H 0.121 0.879 8 C -0.200 4.200 9 N -0.529 5.529 10 Si 0.805 3.195 11 H -0.197 1.197 12 H -0.208 1.208 13 H -0.183 1.183 14 C 0.247 3.753 15 O -0.519 6.519 16 C -0.116 4.116 17 C -0.050 4.050 18 C -0.149 4.149 19 C -0.116 4.116 20 C -0.173 4.173 21 C 0.053 3.947 22 O -0.323 6.323 23 C -0.176 4.176 24 H 0.076 0.924 25 H 0.089 0.911 26 H 0.070 0.930 27 H 0.080 0.920 28 H 0.072 0.928 29 H 0.057 0.943 30 H 0.075 0.925 31 H 0.111 0.889 32 H 0.042 0.958 33 H 0.082 0.918 34 H 0.124 0.876 35 H 0.111 0.889 36 H 0.148 0.852 37 H 0.175 0.825 38 H 0.169 0.831 39 H 0.267 0.733 40 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges -3.964 7.425 5.119 9.852 hybrid contribution 0.740 0.141 -1.059 1.300 sum -3.224 7.566 4.060 9.172 Atomic orbital electron populations 1.21705 0.93989 1.02376 1.01823 1.21414 0.97249 0.95192 1.01586 1.21760 0.95360 0.97769 1.00355 1.21372 0.93286 0.84712 1.01363 1.43761 1.55318 1.12207 1.05477 1.19816 1.41732 0.96195 0.90713 0.87932 1.26192 0.93384 0.96333 1.04136 1.70058 1.32108 1.16313 1.34456 0.85115 0.79290 0.77968 0.77110 1.19655 1.20822 1.18310 1.20941 0.81284 0.89915 0.83111 1.90514 1.56889 1.71787 1.32751 1.20387 1.03683 0.93236 0.94328 1.19495 0.94061 0.96274 0.95154 1.21242 0.97487 0.99159 0.96963 1.21309 0.98525 0.98793 0.93023 1.21611 0.93396 1.00821 1.01474 1.18512 0.88598 0.98484 0.89093 1.84776 1.30570 1.49913 1.67015 1.21340 0.99318 1.02349 0.94570 0.92404 0.91058 0.93024 0.91992 0.92754 0.94312 0.92503 0.88880 0.95842 0.91830 0.87596 0.88911 0.85209 0.82450 0.83061 0.73286 0.87029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.84 9.91 71.98 0.71 -3.13 16 2 C -0.12 -3.97 5.93 30.59 0.18 -3.79 16 3 C -0.11 -4.79 5.50 30.59 0.17 -4.62 16 4 C 0.12 5.82 4.90 86.38 0.42 6.25 16 5 N -0.45 -23.13 2.56 -635.53 -1.63 -24.76 16 6 C -0.36 -17.77 8.70 84.04 0.73 -17.04 16 7 H 0.10 4.72 6.97 -2.91 -0.02 4.69 16 8 C 0.00 0.12 4.92 84.93 0.42 0.54 16 9 N -0.89 -47.24 11.34 21.66 0.25 -47.00 16 10 Si 0.98 38.38 29.61 68.60 2.03 40.41 16 11 H -0.27 -10.32 7.11 99.48 0.71 -9.62 16 12 H -0.28 -11.04 7.11 99.48 0.71 -10.33 16 13 H -0.26 -9.67 7.11 99.48 0.71 -8.97 16 14 C 0.46 22.97 7.59 87.66 0.67 23.63 16 15 O -0.63 -35.23 15.71 -3.07 -0.05 -35.28 16 16 C -0.08 -3.11 4.48 29.10 0.13 -2.98 16 17 C -0.05 -1.83 4.37 -19.88 -0.09 -1.92 16 18 C -0.13 -4.16 9.70 22.28 0.22 -3.95 16 19 C -0.10 -2.59 10.04 22.25 0.22 -2.36 16 20 C -0.15 -4.09 9.99 22.37 0.22 -3.87 16 21 C 0.10 3.02 6.70 22.51 0.15 3.17 16 22 O -0.51 -13.66 13.50 -92.43 -1.25 -14.91 16 23 C -0.16 -5.70 9.64 22.37 0.22 -5.49 16 24 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 25 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 2.07 8.14 -2.38 -0.02 2.05 16 28 H 0.05 1.87 8.14 -2.39 -0.02 1.85 16 29 H 0.04 1.71 8.14 -2.38 -0.02 1.70 16 30 H 0.06 2.37 8.14 -2.39 -0.02 2.35 16 31 H 0.09 4.90 5.35 -2.39 -0.01 4.89 16 32 H 0.02 1.25 7.59 -2.39 -0.02 1.24 16 33 H 0.27 13.53 8.31 -92.71 -0.77 12.76 16 34 H 0.11 3.82 7.59 -2.38 -0.02 3.80 16 35 H 0.09 3.74 8.04 -2.39 -0.02 3.73 16 36 H 0.13 3.77 8.06 -2.91 -0.02 3.75 16 37 H 0.16 2.93 8.06 -2.91 -0.02 2.91 16 38 H 0.15 3.05 8.06 -2.91 -0.02 3.02 16 39 H 0.41 6.19 9.06 -74.05 -0.67 5.52 16 40 H 0.11 4.18 8.06 -2.91 -0.02 4.15 16 Total: -1.00 -67.26 338.56 4.09 -63.17 By element: Atomic # 1 Polarization: 33.55 SS G_CDS: 0.36 Total: 33.91 kcal Atomic # 6 Polarization: -19.92 SS G_CDS: 4.37 Total: -15.55 kcal Atomic # 7 Polarization: -70.37 SS G_CDS: -1.38 Total: -71.75 kcal Atomic # 8 Polarization: -48.89 SS G_CDS: -1.30 Total: -50.19 kcal Atomic # 14 Polarization: 38.38 SS G_CDS: 2.03 Total: 40.41 kcal Total: -67.26 4.09 -63.17 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001142851312.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.503 kcal (2) G-P(sol) polarization free energy of solvation -67.262 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.090 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.172 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds