Wall clock time and date at job start Mon Mar 30 2020 02:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47216 * 2 1 4 4 H 1.09001 * 109.46574 * 55.00401 * 3 2 1 5 5 N 1.46491 * 109.47387 * 295.00369 * 3 2 1 6 6 C 1.34777 * 120.00397 * 153.60940 * 5 3 2 7 7 O 1.21280 * 119.99850 * 0.02562 * 6 5 3 8 8 C 1.50703 * 120.00333 * 179.97438 * 6 5 3 9 9 C 1.50700 * 109.47088 * 180.02562 * 8 6 5 10 10 H 1.08007 * 119.99783 * 359.97438 * 9 8 6 11 11 C 1.37876 * 120.00004 * 180.02562 * 9 8 6 12 12 N 1.31508 * 120.00084 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99912 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46965 * 90.00125 * 13 11 9 15 15 H 1.48490 * 109.47332 * 210.00267 * 13 11 9 16 16 H 1.48500 * 109.47059 * 330.00454 * 13 11 9 17 17 C 1.50705 * 109.47034 * 174.99753 * 3 2 1 18 18 C 1.38163 * 120.02264 * 93.20504 * 17 3 2 19 19 C 1.38243 * 120.05276 * 179.97438 * 18 17 3 20 20 C 1.38296 * 120.11319 * 0.02562 * 19 18 17 21 21 C 1.38119 * 120.05181 * 0.02562 * 20 19 18 22 22 C 1.38709 * 120.03029 * 273.22839 * 17 3 2 23 23 O 1.35903 * 120.05449 * 359.95622 * 22 17 3 24 24 C 1.42899 * 116.99711 * 180.02562 * 23 22 17 25 25 H 1.08996 * 109.46700 * 299.99645 * 1 2 3 26 26 H 1.09000 * 109.46979 * 59.99669 * 1 2 3 27 27 H 1.09003 * 109.47016 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47046 * 239.99800 * 2 1 3 29 29 H 1.09000 * 109.46979 * 120.00331 * 2 1 3 30 30 H 0.97007 * 119.99982 * 333.60551 * 5 3 2 31 31 H 1.08993 * 109.47289 * 300.00144 * 8 6 5 32 32 H 1.08997 * 109.46718 * 60.00209 * 8 6 5 33 33 H 0.96998 * 120.00388 * 179.97438 * 12 11 9 34 34 H 1.07997 * 119.97605 * 0.02659 * 18 17 3 35 35 H 1.07998 * 119.94562 * 180.02562 * 19 18 17 36 36 H 1.07999 * 119.97372 * 179.74601 * 20 19 18 37 37 H 1.08000 * 120.02559 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.47177 * 179.97438 * 24 23 22 39 39 H 1.09001 * 109.47416 * 299.99737 * 24 23 22 40 40 H 1.09005 * 109.47226 * 60.00482 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9814 0.8419 5 7 1.6525 2.0975 -1.2517 6 6 1.4984 3.4358 -1.2924 7 8 1.6810 4.0979 -0.2928 8 6 1.1002 4.1097 -2.5802 9 6 0.9973 5.5967 -2.3580 10 1 1.1995 6.0121 -1.3818 11 6 0.6439 6.4266 -3.4008 12 7 0.5546 7.7243 -3.2071 13 14 0.2935 5.7080 -5.0890 14 1 -1.1493 5.3725 -5.1944 15 1 0.6480 6.7020 -6.1335 16 1 1.1029 4.4779 -5.2811 17 6 3.5420 1.4442 0.1239 18 6 4.3292 1.4771 -1.0111 19 6 5.7070 1.4793 -0.8981 20 6 6.3009 1.4480 0.3505 21 6 5.5183 1.4139 1.4880 22 6 4.1352 1.4123 1.3773 23 8 3.3629 1.3802 2.4952 24 6 4.0420 1.3490 3.7521 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5068 1.5680 -2.0513 31 1 1.8518 3.9079 -3.3433 32 1 0.1355 3.7234 -2.9091 33 1 0.3063 8.3083 -3.9407 34 1 3.8679 1.5021 -1.9872 35 1 6.3207 1.5055 -1.7864 36 1 7.3775 1.4456 0.4360 37 1 5.9825 1.3891 2.4628 38 1 3.3106 1.3258 4.5598 39 1 4.6695 0.4593 3.8041 40 1 4.6640 2.2387 3.8513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001143204959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:31 Heat of formation + Delta-G solvation = -57.429458 kcal Electronic energy + Delta-G solvation = -21731.128023 eV Core-core repulsion = 18511.019354 eV Total energy + Delta-G solvation = -3220.108670 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.39195 -38.78939 -37.29252 -35.64407 -32.78820 -31.88842 -31.06702 -30.02879 -29.42948 -27.35131 -25.94362 -23.19847 -22.32531 -21.98586 -20.48913 -19.57701 -18.06323 -16.89824 -16.34027 -16.08037 -15.73329 -15.64440 -15.08621 -14.47741 -14.30483 -14.16662 -13.67781 -13.54434 -13.50935 -13.14612 -12.76360 -12.35808 -12.14247 -12.11624 -11.77842 -11.57021 -11.32502 -11.20891 -11.08837 -10.83530 -10.74400 -10.72396 -10.48134 -9.94361 -9.21502 -8.83246 -8.65936 -8.55973 -8.49263 -8.05348 -5.98977 -3.98086 1.40113 1.52633 3.28954 3.29639 3.35125 3.37323 3.67537 3.78138 3.92867 4.44099 4.72415 4.85768 4.98568 5.03858 5.09201 5.15085 5.17688 5.27880 5.31974 5.39626 5.47531 5.56405 5.72955 5.81125 5.82898 5.96091 6.05752 6.08127 6.23607 6.32486 6.40163 6.53380 6.64219 6.66004 6.83739 6.97127 7.11641 7.42809 7.59809 8.21820 8.62138 9.18578 9.25795 9.59861 11.14228 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019135 B = 0.004878 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.918378 B = 5739.217304 C = 6084.798104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.120 4.120 3 C 0.192 3.808 4 H 0.099 0.901 5 N -0.743 5.743 6 C 0.522 3.478 7 O -0.526 6.526 8 C -0.029 4.029 9 C -0.510 4.510 10 H 0.092 0.908 11 C 0.068 3.932 12 N -0.898 5.898 13 Si 0.875 3.125 14 H -0.276 1.276 15 H -0.286 1.286 16 H -0.267 1.267 17 C -0.115 4.115 18 C -0.067 4.067 19 C -0.157 4.157 20 C -0.088 4.088 21 C -0.211 4.211 22 C 0.134 3.866 23 O -0.311 6.311 24 C 0.028 3.972 25 H 0.056 0.944 26 H 0.059 0.941 27 H 0.052 0.948 28 H 0.064 0.936 29 H 0.073 0.927 30 H 0.393 0.607 31 H 0.044 0.956 32 H 0.041 0.959 33 H 0.263 0.737 34 H 0.128 0.872 35 H 0.121 0.879 36 H 0.121 0.879 37 H 0.125 0.875 38 H 0.098 0.902 39 H 0.052 0.948 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.836 -19.790 7.543 22.582 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.158 4.158 3 C 0.086 3.914 4 H 0.117 0.883 5 N -0.397 5.397 6 C 0.311 3.689 7 O -0.400 6.400 8 C -0.069 4.069 9 C -0.548 4.548 10 H 0.110 0.890 11 C -0.133 4.133 12 N -0.537 5.537 13 Si 0.702 3.298 14 H -0.202 1.202 15 H -0.212 1.212 16 H -0.191 1.191 17 C -0.117 4.117 18 C -0.085 4.085 19 C -0.175 4.175 20 C -0.106 4.106 21 C -0.229 4.229 22 C 0.089 3.911 23 O -0.225 6.225 24 C -0.067 4.067 25 H 0.075 0.925 26 H 0.078 0.922 27 H 0.071 0.929 28 H 0.083 0.917 29 H 0.092 0.908 30 H 0.227 0.773 31 H 0.062 0.938 32 H 0.059 0.941 33 H 0.073 0.927 34 H 0.146 0.854 35 H 0.139 0.861 36 H 0.139 0.861 37 H 0.143 0.857 38 H 0.116 0.884 39 H 0.070 0.930 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 7.696 -19.088 8.219 22.161 hybrid contribution 0.129 -0.421 -1.199 1.277 sum 7.825 -19.508 7.019 22.160 Atomic orbital electron populations 1.21760 0.95116 1.01227 1.02695 1.21733 0.96430 0.95081 1.02555 1.19555 0.88984 0.93351 0.89491 0.88305 1.46352 1.73213 1.08246 1.11915 1.21376 0.75004 0.80431 0.92136 1.90592 1.48774 1.63714 1.36894 1.19677 0.97582 0.98406 0.91246 1.21011 1.46374 0.87834 0.99584 0.89030 1.24978 0.95130 0.94765 0.98458 1.69895 1.48552 1.02992 1.32290 0.86884 0.78983 0.79264 0.84699 1.20185 1.21205 1.19136 1.19710 0.96885 1.04837 0.90270 1.20836 0.93197 0.96565 0.97913 1.21033 0.94818 1.04186 0.97469 1.20867 0.99342 0.98256 0.92110 1.21142 0.92470 1.09675 0.99659 1.18769 0.89435 0.96569 0.86359 1.86095 1.34923 1.88519 1.12914 1.23024 0.98782 1.01060 0.83818 0.92501 0.92181 0.92877 0.91710 0.90810 0.77331 0.93768 0.94147 0.92667 0.85422 0.86061 0.86147 0.85746 0.88363 0.92953 0.92722 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.69 9.80 37.16 0.36 -1.32 16 2 C -0.12 -1.40 5.46 -26.73 -0.15 -1.55 16 3 C 0.19 2.96 1.94 -69.09 -0.13 2.83 16 4 H 0.10 1.83 7.02 -51.93 -0.36 1.46 16 5 N -0.74 -12.31 3.30 -54.94 -0.18 -12.49 16 6 C 0.52 11.68 7.80 -10.98 -0.09 11.59 16 7 O -0.53 -14.14 15.10 5.56 0.08 -14.05 16 8 C -0.03 -0.70 4.53 -29.03 -0.13 -0.83 16 9 C -0.51 -15.20 9.48 -34.44 -0.33 -15.52 16 10 H 0.09 3.12 7.00 -52.48 -0.37 2.75 16 11 C 0.07 2.00 5.47 -17.82 -0.10 1.91 16 12 N -0.90 -28.32 13.96 55.43 0.77 -27.55 16 13 Si 0.87 21.13 27.47 -169.99 -4.67 16.46 16 14 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 15 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 16 H -0.27 -5.97 6.54 56.52 0.37 -5.60 16 17 C -0.11 -1.79 5.03 -104.47 -0.53 -2.31 16 18 C -0.07 -0.97 9.32 -39.61 -0.37 -1.34 16 19 C -0.16 -2.04 10.04 -39.56 -0.40 -2.44 16 20 C -0.09 -1.07 10.04 -39.60 -0.40 -1.47 16 21 C -0.21 -2.69 9.04 -39.44 -0.36 -3.04 16 22 C 0.13 1.99 6.66 -39.22 -0.26 1.73 16 23 O -0.31 -4.35 9.60 -19.44 -0.19 -4.54 16 24 C 0.03 0.27 9.81 101.05 0.99 1.26 16 25 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 26 H 0.06 0.70 7.75 -51.93 -0.40 0.30 16 27 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 29 H 0.07 0.83 8.14 -51.93 -0.42 0.41 16 30 H 0.39 5.25 8.62 -40.82 -0.35 4.89 16 31 H 0.04 1.00 7.20 -51.93 -0.37 0.63 16 32 H 0.04 0.90 7.57 -51.93 -0.39 0.51 16 33 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 34 H 0.13 1.74 7.31 -52.49 -0.38 1.35 16 35 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 36 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 37 H 0.12 1.26 6.30 -52.49 -0.33 0.93 16 38 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 39 H 0.05 0.39 7.66 -51.93 -0.40 0.00 16 40 H 0.05 0.50 7.66 -51.93 -0.40 0.10 16 LS Contribution 333.83 15.07 5.03 5.03 Total: -1.00 -35.80 333.83 -6.91 -42.71 By element: Atomic # 1 Polarization: 10.84 SS G_CDS: -5.89 Total: 4.95 kcal Atomic # 6 Polarization: -8.65 SS G_CDS: -1.87 Total: -10.52 kcal Atomic # 7 Polarization: -40.63 SS G_CDS: 0.59 Total: -40.04 kcal Atomic # 8 Polarization: -18.49 SS G_CDS: -0.10 Total: -18.59 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -4.67 Total: 16.46 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -35.80 -6.91 -42.71 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143204959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -14.718 kcal (2) G-P(sol) polarization free energy of solvation -35.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.518 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.911 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.712 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.429 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds