Wall clock time and date at job start Mon Mar 30 2020 02:52:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52995 * 109.47216 * 2 1 4 4 H 1.09001 * 109.46574 * 55.00401 * 3 2 1 5 5 N 1.46491 * 109.47387 * 295.00369 * 3 2 1 6 6 C 1.34777 * 120.00397 * 153.60940 * 5 3 2 7 7 O 1.21280 * 119.99850 * 0.02562 * 6 5 3 8 8 C 1.50703 * 120.00333 * 179.97438 * 6 5 3 9 9 C 1.50700 * 109.47088 * 180.02562 * 8 6 5 10 10 H 1.08007 * 119.99783 * 359.97438 * 9 8 6 11 11 C 1.37876 * 120.00004 * 180.02562 * 9 8 6 12 12 N 1.31508 * 120.00084 * 180.02562 * 11 9 8 13 13 Si 1.86802 * 119.99912 * 359.97438 * 11 9 8 14 14 H 1.48498 * 109.46965 * 90.00125 * 13 11 9 15 15 H 1.48490 * 109.47332 * 210.00267 * 13 11 9 16 16 H 1.48500 * 109.47059 * 330.00454 * 13 11 9 17 17 C 1.50705 * 109.47034 * 174.99753 * 3 2 1 18 18 C 1.38163 * 120.02264 * 93.20504 * 17 3 2 19 19 C 1.38243 * 120.05276 * 179.97438 * 18 17 3 20 20 C 1.38296 * 120.11319 * 0.02562 * 19 18 17 21 21 C 1.38119 * 120.05181 * 0.02562 * 20 19 18 22 22 C 1.38709 * 120.03029 * 273.22839 * 17 3 2 23 23 O 1.35903 * 120.05449 * 359.95622 * 22 17 3 24 24 C 1.42899 * 116.99711 * 180.02562 * 23 22 17 25 25 H 1.08996 * 109.46700 * 299.99645 * 1 2 3 26 26 H 1.09000 * 109.46979 * 59.99669 * 1 2 3 27 27 H 1.09003 * 109.47016 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.47046 * 239.99800 * 2 1 3 29 29 H 1.09000 * 109.46979 * 120.00331 * 2 1 3 30 30 H 0.97007 * 119.99982 * 333.60551 * 5 3 2 31 31 H 1.08993 * 109.47289 * 300.00144 * 8 6 5 32 32 H 1.08997 * 109.46718 * 60.00209 * 8 6 5 33 33 H 0.96998 * 120.00388 * 179.97438 * 12 11 9 34 34 H 1.07997 * 119.97605 * 0.02659 * 18 17 3 35 35 H 1.07998 * 119.94562 * 180.02562 * 19 18 17 36 36 H 1.07999 * 119.97372 * 179.74601 * 20 19 18 37 37 H 1.08000 * 120.02559 * 179.97438 * 21 20 19 38 38 H 1.08997 * 109.47177 * 179.97438 * 24 23 22 39 39 H 1.09001 * 109.47416 * 299.99737 * 24 23 22 40 40 H 1.09005 * 109.47226 * 60.00482 * 24 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6054 1.9814 0.8419 5 7 1.6525 2.0975 -1.2517 6 6 1.4984 3.4358 -1.2924 7 8 1.6810 4.0979 -0.2928 8 6 1.1002 4.1097 -2.5802 9 6 0.9973 5.5967 -2.3580 10 1 1.1995 6.0121 -1.3818 11 6 0.6439 6.4266 -3.4008 12 7 0.5546 7.7243 -3.2071 13 14 0.2935 5.7080 -5.0890 14 1 -1.1493 5.3725 -5.1944 15 1 0.6480 6.7020 -6.1335 16 1 1.1029 4.4779 -5.2811 17 6 3.5420 1.4442 0.1239 18 6 4.3292 1.4771 -1.0111 19 6 5.7070 1.4793 -0.8981 20 6 6.3009 1.4480 0.3505 21 6 5.5183 1.4139 1.4880 22 6 4.1352 1.4123 1.3773 23 8 3.3629 1.3802 2.4952 24 6 4.0420 1.3490 3.7521 25 1 -0.3632 0.5138 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.8934 -0.5139 -0.8900 29 1 1.8934 -0.5139 0.8900 30 1 1.5068 1.5680 -2.0513 31 1 1.8518 3.9079 -3.3433 32 1 0.1355 3.7234 -2.9091 33 1 0.3063 8.3083 -3.9407 34 1 3.8679 1.5021 -1.9872 35 1 6.3207 1.5055 -1.7864 36 1 7.3775 1.4456 0.4360 37 1 5.9825 1.3891 2.4628 38 1 3.3106 1.3258 4.5598 39 1 4.6695 0.4593 3.8041 40 1 4.6640 2.2387 3.8513 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001143204959.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:31 Heat of formation + Delta-G solvation = -82.170177 kcal Electronic energy + Delta-G solvation = -21732.200861 eV Core-core repulsion = 18511.019354 eV Total energy + Delta-G solvation = -3221.181508 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.49424 -40.31520 -38.38059 -36.94715 -34.99156 -33.34026 -32.12874 -31.34855 -31.00815 -28.20103 -27.15257 -25.13579 -23.31492 -22.99957 -21.73955 -21.20782 -19.05581 -19.01734 -17.60533 -17.47547 -17.08667 -16.63266 -16.43730 -16.00677 -15.79946 -15.38783 -14.94087 -14.79023 -14.73443 -14.48565 -14.15848 -13.82486 -13.48974 -13.25173 -13.03976 -12.80067 -12.64123 -12.39887 -12.31791 -12.14558 -11.99703 -11.85847 -11.78613 -11.71116 -11.51956 -10.77492 -10.54815 -10.05951 -9.76095 -9.07703 -8.24675 -6.33066 0.37655 0.50413 1.40306 1.44964 1.55411 1.91875 2.38816 2.40452 2.41169 2.82511 3.08797 3.69741 3.93562 4.02052 4.15095 4.16274 4.29058 4.32823 4.37533 4.41541 4.49244 4.61355 4.69176 4.71554 4.73346 4.81756 4.91412 5.03244 5.08917 5.11936 5.20271 5.32167 5.40324 5.46206 5.51121 5.58667 5.74353 5.89132 6.27278 6.47233 6.72323 6.90005 7.27610 7.57637 8.93289 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019135 B = 0.004878 C = 0.004601 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1462.918378 B = 5739.217304 C = 6084.798104 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.108 4.108 3 C 0.195 3.805 4 H 0.060 0.940 5 N -0.715 5.715 6 C 0.522 3.478 7 O -0.584 6.584 8 C -0.027 4.027 9 C -0.533 4.533 10 H 0.024 0.976 11 C 0.000 4.000 12 N -0.956 5.956 13 Si 0.963 3.037 14 H -0.262 1.262 15 H -0.286 1.286 16 H -0.228 1.228 17 C -0.143 4.143 18 C -0.084 4.084 19 C -0.164 4.164 20 C -0.088 4.088 21 C -0.215 4.215 22 C 0.115 3.885 23 O -0.336 6.336 24 C 0.020 3.980 25 H 0.040 0.960 26 H 0.054 0.946 27 H 0.078 0.922 28 H 0.087 0.913 29 H 0.079 0.921 30 H 0.414 0.586 31 H 0.070 0.930 32 H 0.069 0.931 33 H 0.268 0.732 34 H 0.133 0.867 35 H 0.144 0.856 36 H 0.152 0.848 37 H 0.149 0.851 38 H 0.114 0.886 39 H 0.074 0.926 40 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.704 -23.047 5.604 25.265 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.146 4.146 3 C 0.089 3.911 4 H 0.078 0.922 5 N -0.368 5.368 6 C 0.311 3.689 7 O -0.463 6.463 8 C -0.066 4.066 9 C -0.571 4.571 10 H 0.043 0.957 11 C -0.196 4.196 12 N -0.596 5.596 13 Si 0.784 3.216 14 H -0.186 1.186 15 H -0.212 1.212 16 H -0.150 1.150 17 C -0.145 4.145 18 C -0.102 4.102 19 C -0.183 4.183 20 C -0.106 4.106 21 C -0.233 4.233 22 C 0.069 3.931 23 O -0.250 6.250 24 C -0.075 4.075 25 H 0.059 0.941 26 H 0.073 0.927 27 H 0.097 0.903 28 H 0.106 0.894 29 H 0.097 0.903 30 H 0.251 0.749 31 H 0.088 0.912 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.151 0.849 35 H 0.161 0.839 36 H 0.170 0.830 37 H 0.167 0.833 38 H 0.133 0.867 39 H 0.093 0.907 40 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 8.574 -22.428 6.284 24.820 hybrid contribution -0.081 0.635 -0.425 0.769 sum 8.493 -21.793 5.858 24.112 Atomic orbital electron populations 1.21766 0.94705 1.02560 1.01669 1.21677 0.96605 0.92419 1.03896 1.19580 0.89607 0.94766 0.87097 0.92223 1.45976 1.71066 1.06358 1.13439 1.21180 0.74724 0.82046 0.90922 1.90581 1.51680 1.65493 1.38553 1.19599 0.99684 0.94689 0.92671 1.21171 1.47107 0.91537 0.97261 0.95717 1.26166 0.94224 0.94883 1.04313 1.70101 1.49866 1.05294 1.34350 0.85510 0.79952 0.79562 0.76609 1.18645 1.21227 1.15024 1.19812 0.96640 1.06668 0.91362 1.21027 0.94143 0.97230 0.97796 1.21372 0.94481 1.03557 0.98845 1.21297 1.00976 0.96746 0.91557 1.21488 0.91772 1.08806 1.01238 1.19034 0.90479 0.97112 0.86487 1.86063 1.36269 1.88575 1.14056 1.23309 0.99616 1.02094 0.82456 0.94115 0.92651 0.90335 0.89420 0.90270 0.74916 0.91179 0.91327 0.92364 0.84881 0.83856 0.83048 0.83346 0.86740 0.90749 0.92687 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.12 9.80 71.98 0.71 -2.42 16 2 C -0.11 -2.36 5.46 30.59 0.17 -2.20 16 3 C 0.19 6.04 1.94 44.25 0.09 6.13 16 4 H 0.06 2.34 7.02 -2.39 -0.02 2.32 16 5 N -0.71 -23.14 3.30 -446.11 -1.47 -24.62 16 6 C 0.52 23.76 7.80 87.66 0.68 24.45 16 7 O -0.58 -33.34 15.10 -3.03 -0.05 -33.39 16 8 C -0.03 -1.25 4.53 29.10 0.13 -1.12 16 9 C -0.53 -32.88 9.48 25.60 0.24 -32.64 16 10 H 0.02 1.80 7.00 -2.91 -0.02 1.78 16 11 C 0.00 0.01 5.47 84.66 0.46 0.47 16 12 N -0.96 -62.48 13.96 21.45 0.30 -62.18 16 13 Si 0.96 42.60 27.47 68.60 1.88 44.49 16 14 H -0.26 -10.96 7.11 99.48 0.71 -10.26 16 15 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 16 H -0.23 -8.61 6.54 99.48 0.65 -7.96 16 17 C -0.14 -4.42 5.03 -19.77 -0.10 -4.52 16 18 C -0.08 -2.34 9.32 22.25 0.21 -2.14 16 19 C -0.16 -3.95 10.04 22.28 0.22 -3.73 16 20 C -0.09 -1.94 10.04 22.26 0.22 -1.72 16 21 C -0.21 -5.15 9.04 22.36 0.20 -4.95 16 22 C 0.11 3.37 6.66 22.50 0.15 3.52 16 23 O -0.34 -9.53 9.60 -92.46 -0.89 -10.42 16 24 C 0.02 0.35 9.81 113.37 1.11 1.46 16 25 H 0.04 0.97 8.14 -2.39 -0.02 0.95 16 26 H 0.05 1.20 7.75 -2.39 -0.02 1.18 16 27 H 0.08 1.25 8.14 -2.39 -0.02 1.23 16 28 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.41 9.97 8.62 -92.70 -0.80 9.18 16 31 H 0.07 2.94 7.20 -2.39 -0.02 2.92 16 32 H 0.07 2.85 7.57 -2.39 -0.02 2.83 16 33 H 0.27 16.09 8.31 -92.71 -0.77 15.32 16 34 H 0.13 3.39 7.31 -2.91 -0.02 3.37 16 35 H 0.14 2.70 8.06 -2.91 -0.02 2.68 16 36 H 0.15 2.32 8.06 -2.91 -0.02 2.30 16 37 H 0.15 2.69 6.30 -2.91 -0.02 2.67 16 38 H 0.11 1.62 8.14 -2.39 -0.02 1.60 16 39 H 0.07 0.99 7.66 -2.39 -0.02 0.97 16 40 H 0.05 0.97 7.66 -2.38 -0.02 0.95 16 Total: -1.00 -84.67 333.83 4.46 -80.21 By element: Atomic # 1 Polarization: 25.12 SS G_CDS: 0.18 Total: 25.30 kcal Atomic # 6 Polarization: -23.89 SS G_CDS: 4.50 Total: -19.39 kcal Atomic # 7 Polarization: -85.62 SS G_CDS: -1.17 Total: -86.80 kcal Atomic # 8 Polarization: -42.88 SS G_CDS: -0.93 Total: -43.81 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.88 Total: 44.49 kcal Total: -84.67 4.46 -80.21 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001143204959.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -1.960 kcal (2) G-P(sol) polarization free energy of solvation -84.669 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -86.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.210 kcal (6) G-S(sol) free energy of system = (1) + (5) -82.170 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds