Wall clock time and date at job start Mon Mar 30 2020 01:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47320 * 2 1 4 4 C 1.53002 * 109.47076 * 239.99941 * 2 1 3 5 5 C 1.52993 * 109.47191 * 186.14616 * 4 2 1 6 6 H 1.09006 * 109.47163 * 303.74272 * 5 4 2 7 7 O 1.42902 * 109.47344 * 63.74475 * 5 4 2 8 8 C 1.50700 * 109.47281 * 183.74188 * 5 4 2 9 9 O 1.21285 * 120.00276 * 245.00091 * 8 5 4 10 10 N 1.34783 * 120.00038 * 64.99724 * 8 5 4 11 11 C 1.39932 * 120.00024 * 174.88766 * 10 8 5 12 12 C 1.39296 * 119.94806 * 325.84536 * 11 10 8 13 13 C 1.38484 * 120.42579 * 179.76316 * 12 11 10 14 14 C 1.37688 * 120.32590 * 0.51762 * 13 12 11 15 15 C 1.40740 * 119.87972 * 359.74361 * 14 13 12 16 16 C 1.41407 * 120.20823 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00479 * 209.57023 * 16 15 14 18 18 C 1.39940 * 120.00042 * 29.57029 * 16 15 14 19 19 N 1.30834 * 119.99545 * 9.78489 * 18 16 15 20 20 Si 1.86790 * 120.00002 * 189.78445 * 18 16 15 21 21 H 1.48503 * 109.47310 * 90.00033 * 20 18 16 22 22 H 1.48503 * 109.47386 * 210.00088 * 20 18 16 23 23 H 1.48499 * 109.47672 * 330.00145 * 20 18 16 24 24 C 1.38236 * 119.94604 * 146.12836 * 11 10 8 25 25 H 1.09006 * 109.47722 * 175.18470 * 1 2 3 26 26 H 1.08997 * 109.47604 * 295.18322 * 1 2 3 27 27 H 1.08999 * 109.47375 * 55.18500 * 1 2 3 28 28 H 1.08999 * 109.47151 * 120.00745 * 2 1 3 29 29 H 1.08998 * 109.47180 * 60.00152 * 3 2 1 30 30 H 1.08997 * 109.47110 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46919 * 300.00410 * 3 2 1 32 32 H 1.09006 * 109.47059 * 306.14941 * 4 2 1 33 33 H 1.09004 * 109.46836 * 66.14549 * 4 2 1 34 34 H 0.96700 * 114.00141 * 59.99907 * 7 5 4 35 35 H 0.97000 * 119.99818 * 354.89002 * 10 8 5 36 36 H 1.08001 * 119.78513 * 0.02777 * 12 11 10 37 37 H 1.08001 * 119.83976 * 180.26440 * 13 12 11 38 38 H 1.07995 * 120.06167 * 179.76341 * 14 13 12 39 39 H 0.97001 * 119.99595 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.16187 * 359.94745 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5621 -0.8564 -1.1745 6 1 4.0088 0.1302 -1.0509 7 8 3.9130 -1.6810 -0.0614 8 6 4.0738 -1.4839 -2.4455 9 8 4.5990 -2.5767 -2.4136 10 7 3.9476 -0.8308 -3.6177 11 6 4.5167 -1.3632 -4.7800 12 6 5.7158 -2.0683 -4.7071 13 6 6.2853 -2.6036 -5.8504 14 6 5.6772 -2.4352 -7.0742 15 6 4.4682 -1.7203 -7.1639 16 6 3.8375 -1.5437 -8.4172 17 1 3.2354 -0.6659 -8.5998 18 6 3.9934 -2.5063 -9.4209 19 7 4.5578 -3.6538 -9.1445 20 14 3.3959 -2.1528 -11.1549 21 1 4.4893 -1.5209 -11.9362 22 1 2.9915 -3.4237 -11.8080 23 1 2.2316 -1.2326 -11.0995 24 6 3.8911 -1.1834 -5.9995 25 1 -0.3635 -1.0241 -0.0863 26 1 -0.3634 0.4373 0.9299 27 1 -0.3634 0.5867 -0.8437 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.5895 -1.7123 -1.3060 33 1 1.7692 -0.1478 -2.1358 34 1 3.5489 -2.5758 -0.1045 35 1 3.4624 0.0082 -3.6557 36 1 6.2023 -2.2022 -3.7522 37 1 7.2130 -3.1523 -5.7823 38 1 6.1270 -2.8511 -7.9635 39 1 4.6656 -4.3212 -9.8402 40 1 2.9633 -0.6336 -6.0576 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144176013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:07 Heat of formation + Delta-G solvation = -89.375721 kcal Electronic energy + Delta-G solvation = -21117.194746 eV Core-core repulsion = 17895.700782 eV Total energy + Delta-G solvation = -3221.493964 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.15579 -37.95045 -36.84673 -35.34244 -34.36544 -33.10060 -30.10340 -29.83946 -27.89520 -27.39857 -25.26342 -24.58580 -21.51034 -20.97840 -20.27236 -19.79777 -17.81388 -17.46372 -16.23921 -16.12740 -15.48783 -15.00003 -14.80751 -14.60905 -14.26124 -14.06503 -13.73653 -13.03252 -12.92200 -12.80708 -12.42359 -12.27845 -12.14085 -11.90886 -11.66388 -11.34003 -11.19834 -11.18122 -11.10059 -10.93069 -10.83167 -10.63544 -10.38629 -10.13497 -9.58740 -9.37570 -9.20902 -8.89099 -7.45945 -6.95010 -6.67306 -4.39574 2.48968 2.80263 3.07781 3.10344 3.14091 3.28700 3.51426 3.94934 4.19301 4.56284 4.62707 4.67617 4.69537 4.94739 5.02313 5.18788 5.41869 5.48631 5.54077 5.62186 5.65007 5.70187 5.75228 5.94523 6.09168 6.17846 6.26366 6.50154 6.70047 6.89727 6.96562 7.03398 7.25384 7.43666 7.57446 7.64196 7.94524 8.02538 8.10768 8.28465 8.53602 8.66033 8.89257 8.94902 10.25497 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024897 B = 0.003750 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.347246 B = 7464.488747 C = 8219.047471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.093 4.093 3 C -0.152 4.152 4 C -0.145 4.145 5 C 0.093 3.907 6 H 0.124 0.876 7 O -0.538 6.538 8 C 0.475 3.525 9 O -0.517 6.517 10 N -0.663 5.663 11 C 0.146 3.854 12 C -0.221 4.221 13 C -0.098 4.098 14 C -0.159 4.159 15 C 0.121 3.879 16 C -0.467 4.467 17 H 0.076 0.924 18 C 0.073 3.927 19 N -0.803 5.803 20 Si 0.912 3.088 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.264 1.264 24 C -0.238 4.238 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.055 0.945 28 H 0.079 0.921 29 H 0.055 0.945 30 H 0.057 0.943 31 H 0.056 0.944 32 H 0.073 0.927 33 H 0.078 0.922 34 H 0.382 0.618 35 H 0.399 0.601 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.121 0.879 39 H 0.279 0.721 40 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.981 7.385 12.471 15.679 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.111 4.111 3 C -0.209 4.209 4 C -0.183 4.183 5 C 0.030 3.970 6 H 0.141 0.859 7 O -0.343 6.343 8 C 0.261 3.739 9 O -0.392 6.392 10 N -0.308 5.308 11 C 0.055 3.945 12 C -0.242 4.242 13 C -0.117 4.117 14 C -0.179 4.179 15 C 0.118 3.882 16 C -0.497 4.497 17 H 0.094 0.906 18 C -0.143 4.143 19 N -0.429 5.429 20 Si 0.737 3.263 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.188 1.188 24 C -0.260 4.260 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.074 0.926 28 H 0.098 0.902 29 H 0.074 0.926 30 H 0.076 0.924 31 H 0.075 0.925 32 H 0.092 0.908 33 H 0.097 0.903 34 H 0.231 0.769 35 H 0.234 0.766 36 H 0.118 0.882 37 H 0.110 0.890 38 H 0.139 0.861 39 H 0.090 0.910 40 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -5.232 6.903 12.630 15.315 hybrid contribution -0.870 -0.070 -1.112 1.413 sum -6.102 6.832 11.519 14.717 Atomic orbital electron populations 1.21852 0.95109 1.01851 1.01745 1.21049 0.95557 0.96344 0.98182 1.21923 1.01293 0.95833 1.01865 1.22351 0.94128 1.02277 0.99530 1.21920 0.95033 0.95414 0.84583 0.85904 1.86544 1.77965 1.28022 1.41793 1.21590 0.80281 0.86312 0.85754 1.90737 1.42558 1.19799 1.86062 1.43533 1.54715 1.25137 1.07421 1.17457 0.93237 0.99473 0.84338 1.20337 0.97205 1.08762 0.97893 1.20620 0.98656 0.99350 0.93107 1.21440 0.96128 1.03949 0.96399 1.17392 0.90173 0.88999 0.91616 1.19501 1.27814 1.06023 0.96382 0.90574 1.25871 0.93576 0.94128 1.00713 1.69801 1.33996 1.04485 1.34655 0.86258 0.79822 0.78682 0.81571 1.19384 1.20352 1.18761 1.20766 1.00897 1.13048 0.91281 0.92664 0.92683 0.92611 0.90229 0.92634 0.92362 0.92536 0.90783 0.90308 0.76884 0.76631 0.88163 0.88956 0.86085 0.90986 0.88644 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 9.19 37.16 0.34 -0.78 16 2 C -0.09 -0.77 2.86 -90.62 -0.26 -1.03 16 3 C -0.15 -1.16 8.97 37.16 0.33 -0.83 16 4 C -0.14 -1.41 4.31 -26.73 -0.12 -1.52 16 5 C 0.09 1.12 3.25 -27.89 -0.09 1.03 16 6 H 0.12 1.30 6.44 -51.93 -0.33 0.97 16 7 O -0.54 -6.90 12.38 -55.09 -0.68 -7.58 16 8 C 0.47 8.07 6.90 -10.98 -0.08 7.99 16 9 O -0.52 -11.07 14.05 -14.31 -0.20 -11.28 16 10 N -0.66 -11.49 5.27 -9.91 -0.05 -11.54 16 11 C 0.15 3.30 6.25 -83.77 -0.52 2.77 16 12 C -0.22 -5.31 8.66 -39.10 -0.34 -5.65 16 13 C -0.10 -2.41 10.02 -39.69 -0.40 -2.81 16 14 C -0.16 -4.20 8.65 -38.84 -0.34 -4.54 16 15 C 0.12 3.21 5.54 -106.85 -0.59 2.62 16 16 C -0.47 -12.27 9.06 -37.74 -0.34 -12.62 16 17 H 0.08 1.91 7.86 -52.49 -0.41 1.49 16 18 C 0.07 1.85 5.26 -17.34 -0.09 1.76 16 19 N -0.80 -21.02 10.84 55.55 0.60 -20.42 16 20 Si 0.91 18.69 29.57 -169.99 -5.03 13.67 16 21 H -0.27 -5.42 7.11 56.52 0.40 -5.02 16 22 H -0.28 -5.62 7.11 56.52 0.40 -5.22 16 23 H -0.26 -5.31 7.11 56.52 0.40 -4.91 16 24 C -0.24 -5.71 9.70 -38.69 -0.38 -6.09 16 25 H 0.05 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.05 0.38 8.14 -51.93 -0.42 -0.05 16 27 H 0.05 0.41 8.14 -51.93 -0.42 -0.01 16 28 H 0.08 0.71 7.62 -51.93 -0.40 0.32 16 29 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 30 H 0.06 0.46 6.53 -51.93 -0.34 0.12 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.07 0.76 8.14 -51.93 -0.42 0.33 16 33 H 0.08 0.72 7.67 -51.93 -0.40 0.32 16 34 H 0.38 4.21 8.79 45.56 0.40 4.61 16 35 H 0.40 5.38 8.37 -40.82 -0.34 5.03 16 36 H 0.10 2.40 6.45 -52.49 -0.34 2.06 16 37 H 0.09 2.05 8.06 -52.49 -0.42 1.63 16 38 H 0.12 3.28 6.24 -52.49 -0.33 2.95 16 39 H 0.28 6.67 8.30 -40.82 -0.34 6.34 16 40 H 0.10 2.09 8.06 -52.49 -0.42 1.67 16 LS Contribution 331.31 15.07 4.99 4.99 Total: -1.00 -31.03 331.31 -8.23 -39.27 By element: Atomic # 1 Polarization: 17.59 SS G_CDS: -5.00 Total: 12.59 kcal Atomic # 6 Polarization: -16.83 SS G_CDS: -2.86 Total: -19.70 kcal Atomic # 7 Polarization: -32.51 SS G_CDS: 0.55 Total: -31.96 kcal Atomic # 8 Polarization: -17.97 SS G_CDS: -0.88 Total: -18.86 kcal Atomic # 14 Polarization: 18.69 SS G_CDS: -5.03 Total: 13.67 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -31.03 -8.23 -39.27 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144176013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -50.110 kcal (2) G-P(sol) polarization free energy of solvation -31.032 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.142 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.234 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.266 kcal (6) G-S(sol) free energy of system = (1) + (5) -89.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds