Wall clock time and date at job start Mon Mar 30 2020 01:30:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52996 * 109.47320 * 2 1 4 4 C 1.53002 * 109.47076 * 239.99941 * 2 1 3 5 5 C 1.52993 * 109.47191 * 186.14616 * 4 2 1 6 6 H 1.09006 * 109.47163 * 303.74272 * 5 4 2 7 7 O 1.42902 * 109.47344 * 63.74475 * 5 4 2 8 8 C 1.50700 * 109.47281 * 183.74188 * 5 4 2 9 9 O 1.21285 * 120.00276 * 245.00091 * 8 5 4 10 10 N 1.34783 * 120.00038 * 64.99724 * 8 5 4 11 11 C 1.39932 * 120.00024 * 174.88766 * 10 8 5 12 12 C 1.39296 * 119.94806 * 325.84536 * 11 10 8 13 13 C 1.38484 * 120.42579 * 179.76316 * 12 11 10 14 14 C 1.37688 * 120.32590 * 0.51762 * 13 12 11 15 15 C 1.40740 * 119.87972 * 359.74361 * 14 13 12 16 16 C 1.41407 * 120.20823 * 180.02562 * 15 14 13 17 17 H 1.07996 * 120.00479 * 209.57023 * 16 15 14 18 18 C 1.39940 * 120.00042 * 29.57029 * 16 15 14 19 19 N 1.30834 * 119.99545 * 9.78489 * 18 16 15 20 20 Si 1.86790 * 120.00002 * 189.78445 * 18 16 15 21 21 H 1.48503 * 109.47310 * 90.00033 * 20 18 16 22 22 H 1.48503 * 109.47386 * 210.00088 * 20 18 16 23 23 H 1.48499 * 109.47672 * 330.00145 * 20 18 16 24 24 C 1.38236 * 119.94604 * 146.12836 * 11 10 8 25 25 H 1.09006 * 109.47722 * 175.18470 * 1 2 3 26 26 H 1.08997 * 109.47604 * 295.18322 * 1 2 3 27 27 H 1.08999 * 109.47375 * 55.18500 * 1 2 3 28 28 H 1.08999 * 109.47151 * 120.00745 * 2 1 3 29 29 H 1.08998 * 109.47180 * 60.00152 * 3 2 1 30 30 H 1.08997 * 109.47110 * 179.97438 * 3 2 1 31 31 H 1.09003 * 109.46919 * 300.00410 * 3 2 1 32 32 H 1.09006 * 109.47059 * 306.14941 * 4 2 1 33 33 H 1.09004 * 109.46836 * 66.14549 * 4 2 1 34 34 H 0.96700 * 114.00141 * 59.99907 * 7 5 4 35 35 H 0.97000 * 119.99818 * 354.89002 * 10 8 5 36 36 H 1.08001 * 119.78513 * 0.02777 * 12 11 10 37 37 H 1.08001 * 119.83976 * 180.26440 * 13 12 11 38 38 H 1.07995 * 120.06167 * 179.76341 * 14 13 12 39 39 H 0.97001 * 119.99595 * 179.97438 * 19 18 16 40 40 H 1.08001 * 120.16187 * 359.94745 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0399 -0.7213 -1.2493 5 6 3.5621 -0.8564 -1.1745 6 1 4.0088 0.1302 -1.0509 7 8 3.9130 -1.6810 -0.0614 8 6 4.0738 -1.4839 -2.4455 9 8 4.5990 -2.5767 -2.4136 10 7 3.9476 -0.8308 -3.6177 11 6 4.5167 -1.3632 -4.7800 12 6 5.7158 -2.0683 -4.7071 13 6 6.2853 -2.6036 -5.8504 14 6 5.6772 -2.4352 -7.0742 15 6 4.4682 -1.7203 -7.1639 16 6 3.8375 -1.5437 -8.4172 17 1 3.2354 -0.6659 -8.5998 18 6 3.9934 -2.5063 -9.4209 19 7 4.5578 -3.6538 -9.1445 20 14 3.3959 -2.1528 -11.1549 21 1 4.4893 -1.5209 -11.9362 22 1 2.9915 -3.4237 -11.8080 23 1 2.2316 -1.2326 -11.0995 24 6 3.8911 -1.1834 -5.9995 25 1 -0.3635 -1.0241 -0.0863 26 1 -0.3634 0.4373 0.9299 27 1 -0.3634 0.5867 -0.8437 28 1 1.8933 -0.5139 0.8899 29 1 1.6767 1.9563 0.8900 30 1 3.1300 1.4424 0.0005 31 1 1.6766 1.9563 -0.8900 32 1 1.5895 -1.7123 -1.3060 33 1 1.7692 -0.1478 -2.1358 34 1 3.5489 -2.5758 -0.1045 35 1 3.4624 0.0082 -3.6557 36 1 6.2023 -2.2022 -3.7522 37 1 7.2130 -3.1523 -5.7823 38 1 6.1270 -2.8511 -7.9635 39 1 4.6656 -4.3212 -9.8402 40 1 2.9633 -0.6336 -6.0576 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144176013.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:07 Heat of formation + Delta-G solvation = -108.794492 kcal Electronic energy + Delta-G solvation = -21118.036807 eV Core-core repulsion = 17895.700782 eV Total energy + Delta-G solvation = -3222.336025 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.55289 -39.43009 -38.18503 -36.42174 -35.85240 -34.88415 -31.78159 -31.30430 -29.40427 -27.97773 -27.19750 -25.65151 -23.13754 -22.79099 -21.36419 -20.98195 -19.46818 -18.88705 -17.56903 -17.24376 -17.10186 -16.64333 -16.39671 -15.75605 -15.58909 -15.12858 -14.81307 -14.68614 -14.51565 -14.10522 -13.60973 -13.57149 -13.13568 -12.99774 -12.94977 -12.89478 -12.75830 -12.63275 -12.33190 -12.08452 -11.96981 -11.76362 -11.49395 -11.43819 -11.40120 -11.18287 -10.89918 -10.42222 -9.40763 -8.79211 -8.55273 -6.39039 0.80520 0.94868 1.40677 1.48880 1.54392 1.69508 2.11622 2.24091 2.77631 3.22634 3.61918 3.69656 3.77898 3.91830 4.09803 4.22379 4.40557 4.47242 4.61783 4.76932 4.81904 4.88968 4.95705 4.98592 5.01630 5.09121 5.10521 5.12191 5.18355 5.33401 5.34553 5.49129 5.55247 5.72558 5.79692 6.07979 6.08175 6.25228 6.46998 6.63276 6.69169 6.93058 6.96734 7.21318 8.38983 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.024897 B = 0.003750 C = 0.003406 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1124.347246 B = 7464.488747 C = 8219.047471 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.088 4.088 3 C -0.153 4.153 4 C -0.139 4.139 5 C 0.109 3.891 6 H 0.145 0.855 7 O -0.547 6.547 8 C 0.473 3.527 9 O -0.563 6.563 10 N -0.653 5.653 11 C 0.157 3.843 12 C -0.235 4.235 13 C -0.102 4.102 14 C -0.187 4.187 15 C 0.094 3.906 16 C -0.497 4.497 17 H 0.082 0.918 18 C 0.030 3.970 19 N -0.837 5.837 20 Si 0.988 3.012 21 H -0.262 1.262 22 H -0.272 1.272 23 H -0.255 1.255 24 C -0.246 4.246 25 H 0.051 0.949 26 H 0.062 0.938 27 H 0.058 0.942 28 H 0.074 0.926 29 H 0.062 0.938 30 H 0.056 0.944 31 H 0.063 0.937 32 H 0.068 0.932 33 H 0.089 0.911 34 H 0.389 0.611 35 H 0.421 0.579 36 H 0.100 0.900 37 H 0.108 0.892 38 H 0.105 0.895 39 H 0.286 0.714 40 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.464 8.888 12.961 17.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.106 4.106 3 C -0.210 4.210 4 C -0.177 4.177 5 C 0.047 3.953 6 H 0.163 0.837 7 O -0.353 6.353 8 C 0.262 3.738 9 O -0.441 6.441 10 N -0.300 5.300 11 C 0.064 3.936 12 C -0.256 4.256 13 C -0.121 4.121 14 C -0.207 4.207 15 C 0.091 3.909 16 C -0.527 4.527 17 H 0.100 0.900 18 C -0.183 4.183 19 N -0.464 5.464 20 Si 0.809 3.191 21 H -0.187 1.187 22 H -0.197 1.197 23 H -0.179 1.179 24 C -0.268 4.268 25 H 0.070 0.930 26 H 0.082 0.918 27 H 0.077 0.923 28 H 0.092 0.908 29 H 0.081 0.919 30 H 0.075 0.925 31 H 0.082 0.918 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.239 0.761 35 H 0.259 0.741 36 H 0.118 0.882 37 H 0.126 0.874 38 H 0.123 0.877 39 H 0.096 0.904 40 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.735 8.440 13.159 17.023 hybrid contribution -0.398 -0.557 -1.138 1.328 sum -7.133 7.884 12.021 16.048 Atomic orbital electron populations 1.21844 0.94419 1.01857 1.02364 1.21002 0.96056 0.96587 0.96970 1.21943 1.01172 0.95302 1.02629 1.22345 0.91991 1.02517 1.00891 1.21994 0.96547 0.95366 0.81430 0.83750 1.86530 1.78369 1.28701 1.41660 1.22623 0.78865 0.85616 0.86730 1.90718 1.44573 1.22062 1.86781 1.43464 1.54470 1.25913 1.06142 1.17482 0.92408 0.97943 0.85751 1.20461 0.98120 1.09496 0.97500 1.20826 0.99199 0.99169 0.92858 1.21365 0.97056 1.05833 0.96453 1.17780 0.90518 0.89640 0.92947 1.19820 1.28766 1.06832 0.97255 0.89981 1.26803 0.93274 0.93445 1.04814 1.69886 1.34756 1.05442 1.36279 0.85110 0.79485 0.78727 0.75794 1.18708 1.19685 1.17886 1.20947 1.01585 1.13112 0.91127 0.92955 0.91849 0.92295 0.90790 0.91942 0.92544 0.91824 0.91315 0.89247 0.76082 0.74135 0.88220 0.87433 0.87723 0.90362 0.86765 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.19 71.98 0.66 -1.21 16 2 C -0.09 -1.23 2.86 -10.80 -0.03 -1.26 16 3 C -0.15 -1.89 8.97 71.98 0.65 -1.24 16 4 C -0.14 -2.36 4.31 30.59 0.13 -2.23 16 5 C 0.11 2.39 3.25 29.85 0.10 2.48 16 6 H 0.15 2.60 6.44 -2.38 -0.02 2.58 16 7 O -0.55 -13.08 12.38 -129.99 -1.61 -14.69 16 8 C 0.47 15.44 6.90 87.66 0.60 16.05 16 9 O -0.56 -24.00 14.05 15.95 0.22 -23.78 16 10 N -0.65 -21.58 5.27 -303.65 -1.60 -23.18 16 11 C 0.16 7.01 6.25 38.10 0.24 7.25 16 12 C -0.23 -11.37 8.66 22.58 0.20 -11.17 16 13 C -0.10 -5.11 10.02 22.20 0.22 -4.89 16 14 C -0.19 -10.20 8.65 22.75 0.20 -10.00 16 15 C 0.09 5.08 5.54 -21.31 -0.12 4.96 16 16 C -0.50 -26.40 9.06 23.46 0.21 -26.19 16 17 H 0.08 4.11 7.86 -2.91 -0.02 4.08 16 18 C 0.03 1.51 5.26 85.25 0.45 1.96 16 19 N -0.84 -44.66 10.84 21.83 0.24 -44.42 16 20 Si 0.99 38.03 29.57 68.60 2.03 40.06 16 21 H -0.26 -9.77 7.11 99.48 0.71 -9.06 16 22 H -0.27 -10.10 7.11 99.48 0.71 -9.39 16 23 H -0.26 -9.40 7.11 99.48 0.71 -8.69 16 24 C -0.25 -11.75 9.70 22.85 0.22 -11.53 16 25 H 0.05 0.69 8.14 -2.38 -0.02 0.67 16 26 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 27 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 28 H 0.07 1.15 7.62 -2.39 -0.02 1.13 16 29 H 0.06 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.06 0.72 6.53 -2.39 -0.02 0.70 16 31 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 32 H 0.07 1.27 8.14 -2.38 -0.02 1.25 16 33 H 0.09 1.35 7.67 -2.38 -0.02 1.33 16 34 H 0.39 8.15 8.79 -74.06 -0.65 7.50 16 35 H 0.42 10.23 8.37 -92.71 -0.78 9.46 16 36 H 0.10 4.81 6.45 -2.91 -0.02 4.79 16 37 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 38 H 0.10 5.94 6.24 -2.91 -0.02 5.92 16 39 H 0.29 13.86 8.30 -92.71 -0.77 13.09 16 40 H 0.11 4.89 8.06 -2.91 -0.02 4.87 16 Total: -1.00 -67.85 331.31 2.64 -65.20 By element: Atomic # 1 Polarization: 38.19 SS G_CDS: -0.37 Total: 37.83 kcal Atomic # 6 Polarization: -40.75 SS G_CDS: 3.73 Total: -37.02 kcal Atomic # 7 Polarization: -66.24 SS G_CDS: -1.36 Total: -67.60 kcal Atomic # 8 Polarization: -37.09 SS G_CDS: -1.38 Total: -38.47 kcal Atomic # 14 Polarization: 38.03 SS G_CDS: 2.03 Total: 40.06 kcal Total: -67.85 2.64 -65.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144176013.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.590 kcal (2) G-P(sol) polarization free energy of solvation -67.846 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.436 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.641 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.204 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds