Wall clock time and date at job start Mon Mar 30 2020 01:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47173 * 2 1 4 4 C 1.52994 * 109.47360 * 120.00016 * 2 1 3 5 5 C 1.52996 * 109.47380 * 174.99905 * 4 2 1 6 6 H 1.08996 * 109.47210 * 55.00194 * 5 4 2 7 7 O 1.42907 * 109.47306 * 295.00224 * 5 4 2 8 8 C 1.50709 * 109.47383 * 175.00203 * 5 4 2 9 9 O 1.21281 * 119.99656 * 115.00270 * 8 5 4 10 10 N 1.34776 * 119.99468 * 295.27313 * 8 5 4 11 11 C 1.39938 * 119.99533 * 174.61396 * 10 8 5 12 12 C 1.39291 * 119.94888 * 325.55176 * 11 10 8 13 13 C 1.38486 * 120.43017 * 179.76520 * 12 11 10 14 14 C 1.37685 * 120.31987 * 0.51113 * 13 12 11 15 15 C 1.40739 * 119.88422 * 359.74892 * 14 13 12 16 16 C 1.41406 * 120.20741 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00674 * 25.12643 * 16 15 14 18 18 C 1.39932 * 119.99813 * 205.13154 * 16 15 14 19 19 N 1.30828 * 120.00407 * 16.78457 * 18 16 15 20 20 Si 1.86802 * 119.99954 * 196.79044 * 18 16 15 21 21 H 1.48499 * 109.47273 * 89.99847 * 20 18 16 22 22 H 1.48506 * 109.47072 * 209.99724 * 20 18 16 23 23 H 1.48503 * 109.46993 * 329.99555 * 20 18 16 24 24 C 1.38241 * 119.95009 * 145.82850 * 11 10 8 25 25 H 1.08998 * 109.46739 * 300.00180 * 1 2 3 26 26 H 1.09005 * 109.46814 * 59.99967 * 1 2 3 27 27 H 1.08996 * 109.46674 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47040 * 240.00536 * 2 1 3 29 29 H 1.09002 * 109.47542 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47064 * 300.00245 * 3 2 1 31 31 H 1.09004 * 109.47071 * 60.00027 * 3 2 1 32 32 H 1.09003 * 109.47183 * 55.00038 * 4 2 1 33 33 H 1.09004 * 109.47392 * 295.00043 * 4 2 1 34 34 H 0.96700 * 113.99524 * 300.00103 * 7 5 4 35 35 H 0.97000 * 120.00338 * 354.62122 * 10 8 5 36 36 H 1.08001 * 119.78458 * 0.02562 * 12 11 10 37 37 H 1.07998 * 119.83935 * 180.26438 * 13 12 11 38 38 H 1.08003 * 120.05417 * 179.76811 * 14 13 12 39 39 H 0.96997 * 120.00726 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.15643 * 359.96155 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1879 6 1 3.9954 0.1611 1.0527 7 8 3.9386 -1.6661 0.0901 8 6 4.0774 -1.4303 2.4722 9 8 4.6217 -2.5141 2.4608 10 7 3.9260 -0.7643 3.6340 11 6 4.2992 -1.3678 4.8402 12 6 4.1380 -2.7409 5.0097 13 6 4.5085 -3.3493 6.1974 14 6 5.0309 -2.6009 7.2283 15 6 5.1945 -1.2117 7.0734 16 6 5.7308 -0.4366 8.1275 17 1 6.3745 -0.8964 8.8627 18 6 5.4273 0.9264 8.2182 19 7 4.4137 1.4167 7.5520 20 14 6.4696 2.0461 9.2904 21 1 7.5868 2.6024 8.4858 22 1 5.6310 3.1571 9.8078 23 1 7.0194 1.2687 10.4300 24 6 4.8219 -0.5995 5.8637 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -1.7198 1.2951 33 1 1.7517 -0.1583 2.1370 34 1 3.5896 -2.5663 0.1442 35 1 3.5583 0.1333 3.6342 36 1 3.7254 -3.3357 4.2082 37 1 4.3833 -4.4153 6.3170 38 1 5.3148 -3.0792 8.1540 39 1 4.2035 2.3616 7.6145 40 1 4.9436 0.4659 5.7346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144176014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:10 Heat of formation + Delta-G solvation = -90.127755 kcal Electronic energy + Delta-G solvation = -21322.655169 eV Core-core repulsion = 18101.128595 eV Total energy + Delta-G solvation = -3221.526574 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.09993 -37.91649 -36.81945 -35.29528 -34.23032 -33.32879 -30.15692 -29.52981 -28.02821 -27.35159 -25.30071 -24.53916 -21.45169 -21.06342 -20.23716 -19.67363 -17.68948 -17.47468 -16.24790 -16.16532 -15.50976 -14.88057 -14.79569 -14.54265 -14.21415 -14.00920 -13.82727 -13.05222 -12.89224 -12.77405 -12.37748 -12.36970 -12.03708 -11.86573 -11.64556 -11.31560 -11.27370 -11.16575 -11.02160 -10.80005 -10.75526 -10.61309 -10.49167 -10.00644 -9.76475 -9.41566 -9.17143 -8.87918 -7.41364 -7.05262 -6.72603 -4.40114 2.48793 2.82186 3.05505 3.09086 3.15536 3.29738 3.56919 3.91331 4.24314 4.59550 4.63414 4.68841 4.74136 4.99941 5.08916 5.24355 5.46737 5.53330 5.60055 5.64756 5.67935 5.75119 5.80140 5.98596 6.14107 6.22725 6.24313 6.58840 6.65633 6.85291 7.01897 7.03182 7.22090 7.46975 7.57950 7.66521 7.89257 7.99912 8.11178 8.29066 8.51407 8.69625 8.86116 8.92592 10.16218 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019473 B = 0.004364 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.522527 B = 6413.992753 C = 7297.189168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.092 4.092 3 C -0.153 4.153 4 C -0.143 4.143 5 C 0.092 3.908 6 H 0.123 0.877 7 O -0.538 6.538 8 C 0.475 3.525 9 O -0.521 6.521 10 N -0.660 5.660 11 C 0.143 3.857 12 C -0.227 4.227 13 C -0.086 4.086 14 C -0.228 4.228 15 C 0.120 3.880 16 C -0.463 4.463 17 H 0.079 0.921 18 C 0.077 3.923 19 N -0.800 5.800 20 Si 0.908 3.092 21 H -0.268 1.268 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.181 4.181 25 H 0.055 0.945 26 H 0.054 0.946 27 H 0.053 0.947 28 H 0.078 0.922 29 H 0.058 0.942 30 H 0.054 0.946 31 H 0.056 0.944 32 H 0.072 0.928 33 H 0.080 0.920 34 H 0.381 0.619 35 H 0.402 0.598 36 H 0.099 0.901 37 H 0.092 0.908 38 H 0.094 0.906 39 H 0.279 0.721 40 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.671 2.256 -11.465 13.455 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.111 4.111 3 C -0.210 4.210 4 C -0.181 4.181 5 C 0.029 3.971 6 H 0.140 0.860 7 O -0.343 6.343 8 C 0.261 3.739 9 O -0.396 6.396 10 N -0.305 5.305 11 C 0.052 3.948 12 C -0.248 4.248 13 C -0.105 4.105 14 C -0.247 4.247 15 C 0.117 3.883 16 C -0.493 4.493 17 H 0.097 0.903 18 C -0.140 4.140 19 N -0.426 5.426 20 Si 0.732 3.268 21 H -0.193 1.193 22 H -0.204 1.204 23 H -0.186 1.186 24 C -0.203 4.203 25 H 0.074 0.926 26 H 0.073 0.927 27 H 0.073 0.927 28 H 0.097 0.903 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.091 0.909 33 H 0.098 0.902 34 H 0.230 0.770 35 H 0.237 0.763 36 H 0.117 0.883 37 H 0.110 0.890 38 H 0.112 0.888 39 H 0.090 0.910 40 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -6.133 2.230 -11.749 13.440 hybrid contribution -0.088 0.590 0.803 1.000 sum -6.222 2.820 -10.947 12.903 Atomic orbital electron populations 1.21848 0.95138 1.01733 1.01806 1.21044 0.95533 0.96365 0.98135 1.21935 1.01331 0.95840 1.01908 1.22325 0.93967 1.02238 0.99596 1.21920 0.94824 0.95542 0.84772 0.85961 1.86549 1.78072 1.26881 1.42807 1.21574 0.79921 0.86527 0.85854 1.90716 1.41491 1.21136 1.86290 1.43536 1.62563 1.18915 1.05492 1.17621 1.00040 0.92607 0.84579 1.20262 1.12896 0.93068 0.98571 1.20418 0.99205 0.97342 0.93517 1.21048 1.10343 0.94965 0.98387 1.17365 0.88550 0.90960 0.91384 1.19557 1.26806 0.93096 1.09872 0.90318 1.25870 0.93859 0.98830 0.95413 1.69806 1.21812 1.15037 1.35928 0.86318 0.80433 0.79453 0.80547 1.19330 1.20355 1.18611 1.21083 1.06508 0.99817 0.92852 0.92567 0.92687 0.92743 0.90327 0.92329 0.92652 0.92450 0.90893 0.90158 0.77018 0.76341 0.88289 0.89021 0.88820 0.91031 0.85950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.20 9.19 37.16 0.34 -0.85 16 2 C -0.09 -0.83 2.87 -90.62 -0.26 -1.09 16 3 C -0.15 -1.30 8.95 37.16 0.33 -0.97 16 4 C -0.14 -1.49 4.33 -26.74 -0.12 -1.60 16 5 C 0.09 1.18 3.25 -27.88 -0.09 1.09 16 6 H 0.12 1.41 6.34 -51.93 -0.33 1.08 16 7 O -0.54 -7.14 12.45 -55.09 -0.69 -7.82 16 8 C 0.48 8.37 6.90 -10.98 -0.08 8.29 16 9 O -0.52 -11.23 14.07 -14.30 -0.20 -11.43 16 10 N -0.66 -12.22 5.21 -9.91 -0.05 -12.27 16 11 C 0.14 3.34 6.25 -83.76 -0.52 2.81 16 12 C -0.23 -5.40 8.66 -39.10 -0.34 -5.74 16 13 C -0.09 -2.02 10.02 -39.69 -0.40 -2.42 16 14 C -0.23 -5.67 9.79 -38.84 -0.38 -6.05 16 15 C 0.12 3.20 5.57 -106.85 -0.59 2.60 16 16 C -0.46 -12.17 9.05 -37.74 -0.34 -12.52 16 17 H 0.08 2.00 7.90 -52.49 -0.41 1.58 16 18 C 0.08 1.89 5.16 -17.35 -0.09 1.81 16 19 N -0.80 -19.89 10.94 55.55 0.61 -19.28 16 20 Si 0.91 18.39 29.59 -169.99 -5.03 13.36 16 21 H -0.27 -5.40 7.11 56.52 0.40 -4.99 16 22 H -0.28 -5.49 7.11 56.52 0.40 -5.09 16 23 H -0.26 -5.28 7.11 56.52 0.40 -4.88 16 24 C -0.18 -4.60 8.60 -38.69 -0.33 -4.93 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.03 16 26 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 27 H 0.05 0.43 8.14 -51.93 -0.42 0.01 16 28 H 0.08 0.74 7.69 -51.93 -0.40 0.34 16 29 H 0.06 0.51 6.46 -51.93 -0.34 0.18 16 30 H 0.05 0.43 8.14 -51.93 -0.42 0.00 16 31 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 32 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.08 0.83 7.91 -51.93 -0.41 0.42 16 34 H 0.38 4.28 8.79 45.56 0.40 4.68 16 35 H 0.40 6.23 8.69 -40.82 -0.35 5.88 16 36 H 0.10 2.31 6.47 -52.49 -0.34 1.97 16 37 H 0.09 1.89 8.06 -52.49 -0.42 1.47 16 38 H 0.09 2.18 8.06 -52.48 -0.42 1.76 16 39 H 0.28 6.29 8.30 -40.82 -0.34 5.95 16 40 H 0.12 3.13 6.17 -52.48 -0.32 2.81 16 LS Contribution 331.85 15.07 5.00 5.00 Total: -1.00 -30.19 331.85 -8.25 -38.44 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -5.02 Total: 13.57 kcal Atomic # 6 Polarization: -16.69 SS G_CDS: -2.87 Total: -19.56 kcal Atomic # 7 Polarization: -32.11 SS G_CDS: 0.56 Total: -31.55 kcal Atomic # 8 Polarization: -18.37 SS G_CDS: -0.89 Total: -19.25 kcal Atomic # 14 Polarization: 18.39 SS G_CDS: -5.03 Total: 13.36 kcal Total LS contribution 5.00 Total: 5.00 kcal Total: -30.19 -8.25 -38.44 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144176014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.691 kcal (2) G-P(sol) polarization free energy of solvation -30.186 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.877 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.250 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.437 kcal (6) G-S(sol) free energy of system = (1) + (5) -90.128 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds