Wall clock time and date at job start Mon Mar 30 2020 01:30:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52999 * 109.47173 * 2 1 4 4 C 1.52994 * 109.47360 * 120.00016 * 2 1 3 5 5 C 1.52996 * 109.47380 * 174.99905 * 4 2 1 6 6 H 1.08996 * 109.47210 * 55.00194 * 5 4 2 7 7 O 1.42907 * 109.47306 * 295.00224 * 5 4 2 8 8 C 1.50709 * 109.47383 * 175.00203 * 5 4 2 9 9 O 1.21281 * 119.99656 * 115.00270 * 8 5 4 10 10 N 1.34776 * 119.99468 * 295.27313 * 8 5 4 11 11 C 1.39938 * 119.99533 * 174.61396 * 10 8 5 12 12 C 1.39291 * 119.94888 * 325.55176 * 11 10 8 13 13 C 1.38486 * 120.43017 * 179.76520 * 12 11 10 14 14 C 1.37685 * 120.31987 * 0.51113 * 13 12 11 15 15 C 1.40739 * 119.88422 * 359.74892 * 14 13 12 16 16 C 1.41406 * 120.20741 * 180.02562 * 15 14 13 17 17 H 1.08000 * 120.00674 * 25.12643 * 16 15 14 18 18 C 1.39932 * 119.99813 * 205.13154 * 16 15 14 19 19 N 1.30828 * 120.00407 * 16.78457 * 18 16 15 20 20 Si 1.86802 * 119.99954 * 196.79044 * 18 16 15 21 21 H 1.48499 * 109.47273 * 89.99847 * 20 18 16 22 22 H 1.48506 * 109.47072 * 209.99724 * 20 18 16 23 23 H 1.48503 * 109.46993 * 329.99555 * 20 18 16 24 24 C 1.38241 * 119.95009 * 145.82850 * 11 10 8 25 25 H 1.08998 * 109.46739 * 300.00180 * 1 2 3 26 26 H 1.09005 * 109.46814 * 59.99967 * 1 2 3 27 27 H 1.08996 * 109.46674 * 179.97438 * 1 2 3 28 28 H 1.09000 * 109.47040 * 240.00536 * 2 1 3 29 29 H 1.09002 * 109.47542 * 180.02562 * 3 2 1 30 30 H 1.09003 * 109.47064 * 300.00245 * 3 2 1 31 31 H 1.09004 * 109.47071 * 60.00027 * 3 2 1 32 32 H 1.09003 * 109.47183 * 55.00038 * 4 2 1 33 33 H 1.09004 * 109.47392 * 295.00043 * 4 2 1 34 34 H 0.96700 * 113.99524 * 300.00103 * 7 5 4 35 35 H 0.97000 * 120.00338 * 354.62122 * 10 8 5 36 36 H 1.08001 * 119.78458 * 0.02562 * 12 11 10 37 37 H 1.07998 * 119.83935 * 180.26438 * 13 12 11 38 38 H 1.08003 * 120.05417 * 179.76811 * 14 13 12 39 39 H 0.96997 * 120.00726 * 180.02562 * 19 18 16 40 40 H 1.08005 * 120.15643 * 359.96155 * 24 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 1.2492 5 6 3.5648 -0.8310 1.1879 6 1 3.9954 0.1611 1.0527 7 8 3.9386 -1.6661 0.0901 8 6 4.0774 -1.4303 2.4722 9 8 4.6217 -2.5141 2.4608 10 7 3.9260 -0.7643 3.6340 11 6 4.2992 -1.3678 4.8402 12 6 4.1380 -2.7409 5.0097 13 6 4.5085 -3.3493 6.1974 14 6 5.0309 -2.6009 7.2283 15 6 5.1945 -1.2117 7.0734 16 6 5.7308 -0.4366 8.1275 17 1 6.3745 -0.8964 8.8627 18 6 5.4273 0.9264 8.2182 19 7 4.4137 1.4167 7.5520 20 14 6.4696 2.0461 9.2904 21 1 7.5868 2.6024 8.4858 22 1 5.6310 3.1571 9.8078 23 1 7.0194 1.2687 10.4300 24 6 4.8219 -0.5995 5.8637 25 1 -0.3633 0.5139 0.8900 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3632 -1.0277 -0.0005 28 1 1.8933 -0.5137 -0.8900 29 1 3.1300 1.4426 -0.0005 30 1 1.6766 1.9563 -0.8900 31 1 1.6767 1.9563 0.8900 32 1 1.6054 -1.7198 1.2951 33 1 1.7517 -0.1583 2.1370 34 1 3.5896 -2.5663 0.1442 35 1 3.5583 0.1333 3.6342 36 1 3.7254 -3.3357 4.2082 37 1 4.3833 -4.4153 6.3170 38 1 5.3148 -3.0792 8.1540 39 1 4.2035 2.3616 7.6145 40 1 4.9436 0.4659 5.7346 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144176014.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:30:10 Heat of formation + Delta-G solvation = -108.528183 kcal Electronic energy + Delta-G solvation = -21323.453071 eV Core-core repulsion = 18101.128595 eV Total energy + Delta-G solvation = -3222.324477 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.53845 -39.41760 -38.17507 -36.36247 -35.79487 -35.10903 -31.60325 -31.25399 -29.52132 -27.99846 -27.20393 -25.64974 -23.19023 -22.74614 -21.29264 -20.99688 -19.27831 -19.03307 -17.73880 -17.33635 -16.88518 -16.56368 -16.40736 -15.82719 -15.51746 -15.10593 -14.93201 -14.60241 -14.59065 -14.17605 -13.60289 -13.48827 -13.19486 -13.02206 -12.98699 -12.84156 -12.67404 -12.57729 -12.33720 -12.10263 -11.94097 -11.73484 -11.59563 -11.51659 -11.40769 -11.16158 -10.90584 -10.41114 -9.35070 -8.88274 -8.56422 -6.36874 0.77057 1.02417 1.40416 1.48786 1.52411 1.68719 2.14732 2.22178 2.74260 3.22166 3.61669 3.69460 3.79189 3.90763 4.09295 4.20532 4.43939 4.46451 4.69176 4.76192 4.80392 4.83555 4.87682 4.94880 5.07090 5.09496 5.10888 5.13717 5.19712 5.32553 5.34645 5.47188 5.54059 5.76017 5.82478 6.00621 6.07166 6.29875 6.45704 6.60924 6.72141 6.92763 6.95912 7.19993 8.33524 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.019473 B = 0.004364 C = 0.003836 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1437.522527 B = 6413.992753 C = 7297.189168 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.087 4.087 3 C -0.155 4.155 4 C -0.137 4.137 5 C 0.108 3.892 6 H 0.140 0.860 7 O -0.545 6.545 8 C 0.474 3.526 9 O -0.562 6.562 10 N -0.655 5.655 11 C 0.148 3.852 12 C -0.240 4.240 13 C -0.085 4.085 14 C -0.249 4.249 15 C 0.093 3.907 16 C -0.499 4.499 17 H 0.075 0.925 18 C 0.040 3.960 19 N -0.821 5.821 20 Si 0.981 3.019 21 H -0.264 1.264 22 H -0.265 1.265 23 H -0.261 1.261 24 C -0.203 4.203 25 H 0.055 0.945 26 H 0.064 0.936 27 H 0.054 0.946 28 H 0.076 0.924 29 H 0.055 0.945 30 H 0.064 0.936 31 H 0.059 0.941 32 H 0.072 0.928 33 H 0.083 0.917 34 H 0.390 0.610 35 H 0.417 0.583 36 H 0.103 0.897 37 H 0.119 0.881 38 H 0.101 0.899 39 H 0.289 0.711 40 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.206 3.448 -12.218 14.598 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.105 4.105 3 C -0.212 4.212 4 C -0.175 4.175 5 C 0.045 3.955 6 H 0.157 0.843 7 O -0.351 6.351 8 C 0.263 3.737 9 O -0.440 6.440 10 N -0.301 5.301 11 C 0.055 3.945 12 C -0.261 4.261 13 C -0.103 4.103 14 C -0.269 4.269 15 C 0.090 3.910 16 C -0.529 4.529 17 H 0.093 0.907 18 C -0.175 4.175 19 N -0.446 5.446 20 Si 0.802 3.198 21 H -0.189 1.189 22 H -0.190 1.190 23 H -0.185 1.185 24 C -0.224 4.224 25 H 0.074 0.926 26 H 0.083 0.917 27 H 0.073 0.927 28 H 0.095 0.905 29 H 0.074 0.926 30 H 0.083 0.917 31 H 0.078 0.922 32 H 0.090 0.910 33 H 0.101 0.899 34 H 0.240 0.760 35 H 0.254 0.746 36 H 0.121 0.879 37 H 0.137 0.863 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -6.699 3.429 -12.533 14.619 hybrid contribution 0.033 0.174 0.971 0.987 sum -6.666 3.603 -11.561 13.823 Atomic orbital electron populations 1.21837 0.94318 1.01968 1.02293 1.21001 0.96138 0.96404 0.96979 1.21958 1.01132 0.95555 1.02554 1.22303 0.91869 1.02622 1.00685 1.21954 0.96279 0.95498 0.81730 0.84263 1.86536 1.78456 1.27648 1.42477 1.22559 0.78586 0.85813 0.86760 1.90691 1.43236 1.23072 1.86977 1.43519 1.62416 1.19635 1.04505 1.17699 0.98464 0.92588 0.85729 1.20459 1.13365 0.93470 0.98845 1.20736 0.97933 0.98747 0.92929 1.21222 1.11494 0.94833 0.99345 1.17766 0.89121 0.91987 0.92160 1.19805 1.27989 0.94612 1.10464 0.90660 1.26670 0.94639 0.99534 0.96687 1.69832 1.22402 1.15979 1.36428 0.85225 0.78643 0.77388 0.78586 1.18859 1.18991 1.18514 1.21042 1.08312 0.99611 0.93461 0.92603 0.91706 0.92678 0.90537 0.92647 0.91742 0.92171 0.90952 0.89855 0.76032 0.74623 0.87904 0.86275 0.88104 0.89983 0.86733 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 9.19 71.98 0.66 -1.38 16 2 C -0.09 -1.35 2.87 -10.80 -0.03 -1.38 16 3 C -0.15 -2.26 8.95 71.98 0.64 -1.62 16 4 C -0.14 -2.58 4.33 30.59 0.13 -2.45 16 5 C 0.11 2.57 3.25 29.85 0.10 2.67 16 6 H 0.14 2.89 6.34 -2.39 -0.02 2.88 16 7 O -0.55 -13.57 12.45 -129.99 -1.62 -15.19 16 8 C 0.47 16.32 6.90 87.66 0.60 16.93 16 9 O -0.56 -24.09 14.07 15.96 0.22 -23.87 16 10 N -0.65 -23.92 5.21 -303.65 -1.58 -25.50 16 11 C 0.15 6.97 6.25 38.10 0.24 7.20 16 12 C -0.24 -11.46 8.66 22.58 0.20 -11.27 16 13 C -0.08 -3.99 10.02 22.20 0.22 -3.76 16 14 C -0.25 -12.64 9.79 22.75 0.22 -12.42 16 15 C 0.09 5.04 5.57 -21.31 -0.12 4.92 16 16 C -0.50 -26.79 9.05 23.46 0.21 -26.58 16 17 H 0.08 3.93 7.90 -2.91 -0.02 3.91 16 18 C 0.04 1.96 5.16 85.25 0.44 2.40 16 19 N -0.82 -40.82 10.94 21.82 0.24 -40.58 16 20 Si 0.98 37.29 29.59 68.60 2.03 39.32 16 21 H -0.26 -9.80 7.11 99.48 0.71 -9.09 16 22 H -0.27 -9.48 7.11 99.48 0.71 -8.77 16 23 H -0.26 -9.82 7.11 99.48 0.71 -9.11 16 24 C -0.20 -10.49 8.60 22.85 0.20 -10.30 16 25 H 0.05 0.78 8.14 -2.39 -0.02 0.76 16 26 H 0.06 0.78 8.14 -2.38 -0.02 0.76 16 27 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 28 H 0.08 1.26 7.69 -2.39 -0.02 1.24 16 29 H 0.05 0.84 6.46 -2.39 -0.02 0.82 16 30 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.06 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.08 1.55 7.91 -2.38 -0.02 1.53 16 34 H 0.39 8.25 8.79 -74.06 -0.65 7.60 16 35 H 0.42 12.57 8.69 -92.71 -0.81 11.77 16 36 H 0.10 4.78 6.47 -2.91 -0.02 4.77 16 37 H 0.12 4.80 8.06 -2.91 -0.02 4.78 16 38 H 0.10 4.80 8.06 -2.91 -0.02 4.78 16 39 H 0.29 12.86 8.30 -92.71 -0.77 12.09 16 40 H 0.11 5.99 6.17 -2.91 -0.02 5.98 16 Total: -1.00 -65.00 331.85 2.62 -62.39 By element: Atomic # 1 Polarization: 40.84 SS G_CDS: -0.40 Total: 40.45 kcal Atomic # 6 Polarization: -40.73 SS G_CDS: 3.72 Total: -37.02 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -1.34 Total: -66.08 kcal Atomic # 8 Polarization: -37.66 SS G_CDS: -1.39 Total: -39.05 kcal Atomic # 14 Polarization: 37.29 SS G_CDS: 2.03 Total: 39.32 kcal Total: -65.00 2.62 -62.39 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144176014.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.143 kcal (2) G-P(sol) polarization free energy of solvation -65.001 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.144 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.616 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.385 kcal (6) G-S(sol) free energy of system = (1) + (5) -108.528 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds