Wall clock time and date at job start Mon Mar 30 2020 01:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46875 * 2 1 4 4 C 1.52993 * 109.46833 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46776 * 180.02562 * 4 3 2 6 6 C 1.37096 * 119.99824 * 269.99810 * 5 4 3 7 7 H 1.07997 * 120.00284 * 138.69010 * 6 5 4 8 8 C 1.38956 * 120.00280 * 318.68889 * 6 5 4 9 9 N 1.31407 * 119.99985 * 160.61583 * 8 6 5 10 10 Si 1.86807 * 119.99730 * 340.61755 * 8 6 5 11 11 H 1.48497 * 109.47055 * 95.45517 * 10 8 6 12 12 H 1.48501 * 109.47016 * 215.45673 * 10 8 6 13 13 H 1.48502 * 109.46945 * 335.45591 * 10 8 6 14 14 C 1.34776 * 120.00135 * 90.00246 * 5 4 3 15 15 O 1.21287 * 119.99890 * 5.19550 * 14 5 4 16 16 C 1.50696 * 120.00059 * 185.19473 * 14 5 4 17 17 C 1.50705 * 109.47288 * 185.46201 * 16 14 5 18 18 C 1.38168 * 120.02428 * 265.84271 * 17 16 14 19 19 C 1.38238 * 120.05073 * 180.02562 * 18 17 16 20 20 C 1.38289 * 120.11557 * 359.96979 * 19 18 17 21 21 C 1.38120 * 120.05223 * 0.02562 * 20 19 18 22 22 C 1.38707 * 120.02814 * 85.79551 * 17 16 14 23 23 O 1.35906 * 120.05439 * 0.04617 * 22 17 16 24 24 H 1.09010 * 109.46822 * 299.99557 * 1 2 3 25 25 H 1.08999 * 109.47320 * 59.99756 * 1 2 3 26 26 H 1.08997 * 109.46881 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46763 * 240.00573 * 2 1 3 28 28 H 1.08999 * 109.47320 * 120.00244 * 2 1 3 29 29 H 1.08999 * 109.46763 * 60.00180 * 3 2 1 30 30 H 1.08991 * 109.47047 * 300.00379 * 3 2 1 31 31 H 1.08999 * 109.47452 * 60.00415 * 4 3 2 32 32 H 1.09005 * 109.47560 * 299.99952 * 4 3 2 33 33 H 0.97001 * 119.99894 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47595 * 65.45815 * 16 14 5 35 35 H 1.09005 * 109.46833 * 305.45943 * 16 14 5 36 36 H 1.08000 * 119.97317 * 359.97069 * 18 17 16 37 37 H 1.08006 * 119.94016 * 180.02562 * 19 18 17 38 38 H 1.07996 * 119.97304 * 180.02562 * 20 19 18 39 39 H 1.08006 * 120.02283 * 179.71914 * 21 20 19 40 40 H 0.96698 * 113.99607 * 269.95169 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.2862 3.4708 -1.1870 7 1 3.9968 4.5048 -1.3028 8 6 4.8896 2.7962 -2.2414 9 7 4.7724 3.2541 -3.4674 10 14 5.8675 1.2381 -1.9156 11 1 4.9985 0.0538 -2.1332 12 1 7.0266 1.1785 -2.8419 13 1 6.3546 1.2437 -0.5128 14 6 4.2833 3.4585 1.1674 15 8 4.1726 2.8580 2.2153 16 6 4.6726 4.9143 1.1708 17 6 4.9948 5.3450 2.5786 18 6 4.0185 5.9274 3.3639 19 6 4.3136 6.3231 4.6552 20 6 5.5857 6.1367 5.1645 21 6 6.5651 5.5548 4.3834 22 6 6.2713 5.1560 3.0873 23 8 7.2332 4.5833 2.3168 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9329 0.9290 -0.8909 32 1 3.9337 0.9286 0.8891 33 1 5.1934 2.7830 -4.2035 34 1 3.8457 5.5125 0.7881 35 1 5.5483 5.0577 0.5376 36 1 3.0244 6.0745 2.9684 37 1 3.5490 6.7779 5.2677 38 1 5.8136 6.4463 6.1737 39 1 7.5596 5.4136 4.7801 40 1 7.2755 3.6202 2.3918 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144256967.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:09 Heat of formation + Delta-G solvation = -62.124502 kcal Electronic energy + Delta-G solvation = -21854.409502 eV Core-core repulsion = 18634.097240 eV Total energy + Delta-G solvation = -3220.312262 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.78284 -38.54658 -36.25010 -35.59017 -34.02408 -32.26749 -31.90508 -29.66129 -28.86458 -26.78605 -24.78874 -23.30190 -22.27709 -21.24455 -20.69208 -19.03480 -17.97318 -16.85959 -16.27655 -15.78846 -15.63220 -15.18071 -14.79164 -14.73148 -14.17775 -13.77409 -13.57962 -13.28917 -12.85321 -12.75689 -12.68858 -12.31408 -11.94365 -11.73147 -11.62544 -11.52695 -11.39780 -11.17932 -10.79910 -10.68198 -10.60499 -10.40414 -10.10535 -10.01533 -9.80438 -9.22066 -8.77195 -8.48980 -8.17126 -7.76840 -6.50557 -4.14683 1.56057 1.63406 3.03146 3.19575 3.27130 3.69240 3.88012 4.10166 4.40442 4.66272 4.93465 5.14124 5.15129 5.27721 5.33960 5.38494 5.50538 5.57516 5.78524 5.78841 5.98868 6.04750 6.09882 6.13484 6.17171 6.21262 6.25408 6.26631 6.39990 6.48188 6.55218 6.61843 6.71716 6.76284 6.89577 6.92918 7.11472 7.37868 8.00593 8.06378 8.21232 8.92413 9.31230 9.65563 10.59964 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.006162 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.054074 B = 4543.104482 C = 5585.389209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.123 4.123 3 C -0.125 4.125 4 C 0.103 3.897 5 N -0.465 5.465 6 C -0.346 4.346 7 H 0.103 0.897 8 C 0.070 3.930 9 N -0.860 5.860 10 Si 0.877 3.123 11 H -0.275 1.275 12 H -0.288 1.288 13 H -0.262 1.262 14 C 0.488 3.512 15 O -0.597 6.597 16 C -0.086 4.086 17 C -0.070 4.070 18 C -0.095 4.095 19 C -0.132 4.132 20 C -0.117 4.117 21 C -0.149 4.149 22 C 0.116 3.884 23 O -0.497 6.497 24 H 0.051 0.949 25 H 0.053 0.947 26 H 0.048 0.952 27 H 0.059 0.941 28 H 0.058 0.942 29 H 0.059 0.941 30 H 0.070 0.930 31 H 0.063 0.937 32 H 0.067 0.933 33 H 0.275 0.725 34 H 0.091 0.909 35 H 0.108 0.892 36 H 0.122 0.878 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.122 0.878 40 H 0.391 0.609 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.583 0.584 9.848 9.991 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.162 4.162 3 C -0.164 4.164 4 C -0.020 4.020 5 N -0.186 5.186 6 C -0.473 4.473 7 H 0.120 0.880 8 C -0.137 4.137 9 N -0.495 5.495 10 Si 0.705 3.295 11 H -0.202 1.202 12 H -0.215 1.215 13 H -0.186 1.186 14 C 0.278 3.722 15 O -0.482 6.482 16 C -0.125 4.125 17 C -0.071 4.071 18 C -0.113 4.113 19 C -0.150 4.150 20 C -0.135 4.135 21 C -0.167 4.167 22 C 0.072 3.928 23 O -0.308 6.308 24 H 0.070 0.930 25 H 0.073 0.927 26 H 0.067 0.933 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.078 0.922 30 H 0.088 0.912 31 H 0.081 0.919 32 H 0.085 0.915 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.126 0.874 36 H 0.140 0.860 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.140 0.860 40 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -1.471 0.844 9.947 10.090 hybrid contribution 0.428 -1.303 -0.124 1.377 sum -1.044 -0.460 9.823 9.889 Atomic orbital electron populations 1.21741 0.96162 1.00886 1.01736 1.21484 0.95589 0.97493 1.01587 1.21846 0.96100 0.95956 1.02459 1.21600 0.93892 0.85507 1.00986 1.43712 1.57441 1.11722 1.05684 1.19039 1.40960 0.99150 0.88182 0.87952 1.25351 0.95642 0.98015 0.94711 1.69738 1.40536 1.40578 0.98659 0.86911 0.80261 0.83019 0.79339 1.20179 1.21450 1.18589 1.20285 0.79429 0.88921 0.83586 1.90549 1.57088 1.68531 1.31999 1.20383 1.04242 0.94863 0.93058 1.19974 0.92478 0.98082 0.96558 1.20918 0.98524 0.98016 0.93871 1.21039 0.96739 1.01483 0.95739 1.20880 0.93269 1.00031 0.99332 1.21307 0.99883 1.02194 0.93344 1.18285 0.87475 0.97649 0.89424 1.84726 1.53966 1.25574 1.66493 0.92956 0.92746 0.93278 0.92259 0.92333 0.92222 0.91168 0.91888 0.91456 0.91467 0.89026 0.87381 0.86008 0.86285 0.86259 0.85975 0.75268 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.97 9.91 37.16 0.37 -1.60 16 2 C -0.12 -1.94 5.93 -26.73 -0.16 -2.10 16 3 C -0.13 -2.38 5.54 -26.73 -0.15 -2.53 16 4 C 0.10 2.25 4.23 -4.04 -0.02 2.23 16 5 N -0.47 -10.92 2.11 -114.81 -0.24 -11.16 16 6 C -0.35 -8.78 8.88 -14.93 -0.13 -8.91 16 7 H 0.10 2.71 7.52 -52.49 -0.39 2.31 16 8 C 0.07 1.83 5.33 -17.47 -0.09 1.74 16 9 N -0.86 -23.38 13.96 55.50 0.77 -22.61 16 10 Si 0.88 20.34 25.02 -169.99 -4.25 16.09 16 11 H -0.27 -6.14 6.73 56.52 0.38 -5.76 16 12 H -0.29 -6.66 7.11 56.52 0.40 -6.26 16 13 H -0.26 -6.14 7.11 56.52 0.40 -5.74 16 14 C 0.49 11.05 7.61 -10.99 -0.08 10.97 16 15 O -0.60 -14.42 15.60 5.55 0.09 -14.34 16 16 C -0.09 -1.70 4.24 -29.03 -0.12 -1.83 16 17 C -0.07 -1.27 4.39 -104.47 -0.46 -1.73 16 18 C -0.10 -1.53 9.68 -39.61 -0.38 -1.91 16 19 C -0.13 -1.83 10.04 -39.56 -0.40 -2.22 16 20 C -0.12 -1.57 10.04 -39.61 -0.40 -1.97 16 21 C -0.15 -2.22 9.99 -39.44 -0.39 -2.62 16 22 C 0.12 2.04 6.68 -39.22 -0.26 1.78 16 23 O -0.50 -8.67 12.63 -19.44 -0.25 -8.92 16 24 H 0.05 0.67 8.14 -51.92 -0.42 0.25 16 25 H 0.05 0.72 8.14 -51.93 -0.42 0.29 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.14 16 27 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 28 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 29 H 0.06 1.16 8.14 -51.93 -0.42 0.73 16 30 H 0.07 1.41 8.14 -51.93 -0.42 0.98 16 31 H 0.06 1.41 3.56 -51.93 -0.18 1.23 16 32 H 0.07 1.47 7.36 -51.93 -0.38 1.08 16 33 H 0.28 7.01 8.31 -40.82 -0.34 6.68 16 34 H 0.09 1.70 7.97 -51.93 -0.41 1.29 16 35 H 0.11 2.24 7.38 -51.93 -0.38 1.86 16 36 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 37 H 0.12 1.30 8.06 -52.48 -0.42 0.88 16 38 H 0.12 1.23 8.06 -52.49 -0.42 0.81 16 39 H 0.12 1.56 8.06 -52.48 -0.42 1.14 16 40 H 0.39 5.91 9.06 45.56 0.41 6.32 16 LS Contribution 333.13 15.07 5.02 5.02 Total: -1.00 -29.39 333.13 -6.69 -36.08 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -5.15 Total: 10.55 kcal Atomic # 6 Polarization: -8.04 SS G_CDS: -2.68 Total: -10.72 kcal Atomic # 7 Polarization: -34.30 SS G_CDS: 0.53 Total: -33.77 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.16 Total: -23.26 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -4.25 Total: 16.09 kcal Total LS contribution 5.02 Total: 5.02 kcal Total: -29.39 -6.69 -36.08 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144256967.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -26.043 kcal (2) G-P(sol) polarization free energy of solvation -29.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.432 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.082 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.125 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds