Wall clock time and date at job start Mon Mar 30 2020 01:56:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53007 * 109.46875 * 2 1 4 4 C 1.52993 * 109.46833 * 180.02562 * 3 2 1 5 5 N 1.46506 * 109.46776 * 180.02562 * 4 3 2 6 6 C 1.37096 * 119.99824 * 269.99810 * 5 4 3 7 7 H 1.07997 * 120.00284 * 138.69010 * 6 5 4 8 8 C 1.38956 * 120.00280 * 318.68889 * 6 5 4 9 9 N 1.31407 * 119.99985 * 160.61583 * 8 6 5 10 10 Si 1.86807 * 119.99730 * 340.61755 * 8 6 5 11 11 H 1.48497 * 109.47055 * 95.45517 * 10 8 6 12 12 H 1.48501 * 109.47016 * 215.45673 * 10 8 6 13 13 H 1.48502 * 109.46945 * 335.45591 * 10 8 6 14 14 C 1.34776 * 120.00135 * 90.00246 * 5 4 3 15 15 O 1.21287 * 119.99890 * 5.19550 * 14 5 4 16 16 C 1.50696 * 120.00059 * 185.19473 * 14 5 4 17 17 C 1.50705 * 109.47288 * 185.46201 * 16 14 5 18 18 C 1.38168 * 120.02428 * 265.84271 * 17 16 14 19 19 C 1.38238 * 120.05073 * 180.02562 * 18 17 16 20 20 C 1.38289 * 120.11557 * 359.96979 * 19 18 17 21 21 C 1.38120 * 120.05223 * 0.02562 * 20 19 18 22 22 C 1.38707 * 120.02814 * 85.79551 * 17 16 14 23 23 O 1.35906 * 120.05439 * 0.04617 * 22 17 16 24 24 H 1.09010 * 109.46822 * 299.99557 * 1 2 3 25 25 H 1.08999 * 109.47320 * 59.99756 * 1 2 3 26 26 H 1.08997 * 109.46881 * 180.02562 * 1 2 3 27 27 H 1.09001 * 109.46763 * 240.00573 * 2 1 3 28 28 H 1.08999 * 109.47320 * 120.00244 * 2 1 3 29 29 H 1.08999 * 109.46763 * 60.00180 * 3 2 1 30 30 H 1.08991 * 109.47047 * 300.00379 * 3 2 1 31 31 H 1.08999 * 109.47452 * 60.00415 * 4 3 2 32 32 H 1.09005 * 109.47560 * 299.99952 * 4 3 2 33 33 H 0.97001 * 119.99894 * 180.02562 * 9 8 6 34 34 H 1.09000 * 109.47595 * 65.45815 * 16 14 5 35 35 H 1.09005 * 109.46833 * 305.45943 * 16 14 5 36 36 H 1.08000 * 119.97317 * 359.97069 * 18 17 16 37 37 H 1.08006 * 119.94016 * 180.02562 * 19 18 17 38 38 H 1.07996 * 119.97304 * 180.02562 * 20 19 18 39 39 H 1.08006 * 120.02283 * 179.71914 * 21 20 19 40 40 H 0.96698 * 113.99607 * 269.95169 * 23 22 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 3.5699 1.4426 -0.0006 5 7 4.0582 2.8239 0.0000 6 6 4.2862 3.4708 -1.1870 7 1 3.9968 4.5048 -1.3028 8 6 4.8896 2.7962 -2.2414 9 7 4.7724 3.2541 -3.4674 10 14 5.8675 1.2381 -1.9156 11 1 4.9985 0.0538 -2.1332 12 1 7.0266 1.1785 -2.8419 13 1 6.3546 1.2437 -0.5128 14 6 4.2833 3.4585 1.1674 15 8 4.1726 2.8580 2.2153 16 6 4.6726 4.9143 1.1708 17 6 4.9948 5.3450 2.5786 18 6 4.0185 5.9274 3.3639 19 6 4.3136 6.3231 4.6552 20 6 5.5857 6.1367 5.1645 21 6 6.5651 5.5548 4.3834 22 6 6.2713 5.1560 3.0873 23 8 7.2332 4.5833 2.3168 24 1 -0.3633 0.5138 0.8901 25 1 -0.3634 0.5139 -0.8899 26 1 -0.3633 -1.0276 0.0005 27 1 1.8933 -0.5138 -0.8901 28 1 1.8934 -0.5139 0.8899 29 1 1.6766 1.9563 0.8900 30 1 1.6766 1.9564 -0.8899 31 1 3.9329 0.9290 -0.8909 32 1 3.9337 0.9286 0.8891 33 1 5.1934 2.7830 -4.2035 34 1 3.8457 5.5125 0.7881 35 1 5.5483 5.0577 0.5376 36 1 3.0244 6.0745 2.9684 37 1 3.5490 6.7779 5.2677 38 1 5.8136 6.4463 6.1737 39 1 7.5596 5.4136 4.7801 40 1 7.2755 3.6202 2.3918 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144256967.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:09 Heat of formation + Delta-G solvation = -79.726835 kcal Electronic energy + Delta-G solvation = -21855.172796 eV Core-core repulsion = 18634.097240 eV Total energy + Delta-G solvation = -3221.075557 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.24662 -40.14091 -37.51508 -37.28271 -35.62437 -33.85973 -33.63482 -30.88227 -30.29395 -28.23360 -26.71468 -24.76821 -23.47514 -22.53094 -22.10963 -20.89125 -19.32554 -18.60245 -18.07112 -17.32532 -17.00543 -16.64260 -16.23055 -16.09392 -15.80448 -15.54140 -14.80992 -14.71093 -14.57885 -14.32506 -14.06623 -13.79332 -13.38259 -13.12689 -13.05714 -13.00325 -12.88019 -12.77474 -12.26170 -12.15849 -12.08214 -11.94153 -11.80659 -11.47660 -11.30894 -11.08279 -10.56075 -9.76887 -9.66512 -9.42425 -8.52740 -6.18377 0.36192 0.44367 1.16656 1.29159 1.39815 1.86019 2.15959 2.54756 2.78657 2.98810 3.43699 3.86351 3.90955 3.96373 4.04121 4.20651 4.22550 4.27837 4.38474 4.40563 4.56259 4.61947 4.68717 4.74863 4.81553 4.87844 4.91739 5.00560 5.04406 5.14185 5.21844 5.33479 5.40866 5.47030 5.50073 5.57379 5.65213 5.97521 6.05755 6.24142 6.76125 6.93613 7.38797 7.75630 8.61250 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015896 B = 0.006162 C = 0.005012 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1761.054074 B = 4543.104482 C = 5585.389209 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.121 4.121 3 C -0.116 4.116 4 C 0.097 3.903 5 N -0.475 5.475 6 C -0.341 4.341 7 H 0.082 0.918 8 C 0.034 3.966 9 N -0.896 5.896 10 Si 0.924 3.076 11 H -0.258 1.258 12 H -0.285 1.285 13 H -0.269 1.269 14 C 0.488 3.512 15 O -0.610 6.610 16 C -0.076 4.076 17 C -0.101 4.101 18 C -0.109 4.109 19 C -0.127 4.127 20 C -0.108 4.108 21 C -0.152 4.152 22 C 0.090 3.910 23 O -0.510 6.510 24 H 0.054 0.946 25 H 0.052 0.948 26 H 0.071 0.929 27 H 0.061 0.939 28 H 0.067 0.933 29 H 0.052 0.948 30 H 0.055 0.945 31 H 0.058 0.942 32 H 0.066 0.934 33 H 0.280 0.720 34 H 0.096 0.904 35 H 0.091 0.909 36 H 0.129 0.871 37 H 0.154 0.846 38 H 0.159 0.841 39 H 0.143 0.857 40 H 0.396 0.604 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.980 0.121 12.003 12.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.159 4.159 3 C -0.155 4.155 4 C -0.025 4.025 5 N -0.196 5.196 6 C -0.469 4.469 7 H 0.100 0.900 8 C -0.171 4.171 9 N -0.533 5.533 10 Si 0.750 3.250 11 H -0.184 1.184 12 H -0.211 1.211 13 H -0.193 1.193 14 C 0.279 3.721 15 O -0.496 6.496 16 C -0.116 4.116 17 C -0.102 4.102 18 C -0.127 4.127 19 C -0.145 4.145 20 C -0.126 4.126 21 C -0.171 4.171 22 C 0.046 3.954 23 O -0.321 6.321 24 H 0.074 0.926 25 H 0.071 0.929 26 H 0.090 0.910 27 H 0.079 0.921 28 H 0.085 0.915 29 H 0.071 0.929 30 H 0.073 0.927 31 H 0.076 0.924 32 H 0.085 0.915 33 H 0.089 0.911 34 H 0.114 0.886 35 H 0.109 0.891 36 H 0.147 0.853 37 H 0.172 0.828 38 H 0.177 0.823 39 H 0.161 0.839 40 H 0.252 0.748 Dipole moment (debyes) X Y Z Total from point charges -1.879 0.374 12.105 12.256 hybrid contribution 0.536 -1.080 -0.686 1.387 sum -1.342 -0.706 11.419 11.519 Atomic orbital electron populations 1.21713 0.94134 1.02453 1.01846 1.21484 0.97370 0.94894 1.02120 1.21757 0.94111 0.98284 1.01309 1.21726 0.95718 0.84508 1.00547 1.43826 1.58046 1.12427 1.05315 1.18893 1.40624 0.98547 0.88823 0.90043 1.25845 0.96236 1.00547 0.94427 1.69798 1.41840 1.42216 0.99403 0.86153 0.79331 0.80861 0.78627 1.18401 1.21128 1.19317 1.20726 0.78486 0.89908 0.83019 1.90518 1.57560 1.69165 1.32325 1.20244 1.03471 0.93137 0.94729 1.19987 0.93820 1.00467 0.95920 1.21148 0.98431 0.98166 0.94945 1.21460 0.97931 1.00245 0.94879 1.21379 0.92460 0.98015 1.00696 1.21606 1.01431 1.01716 0.92323 1.18610 0.87338 0.98783 0.90711 1.84701 1.54189 1.26128 1.67115 0.92646 0.92904 0.90981 0.92066 0.91454 0.92901 0.92662 0.92428 0.91534 0.91056 0.88576 0.89068 0.85340 0.82824 0.82323 0.83938 0.74762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.54 9.91 71.98 0.71 -2.82 16 2 C -0.12 -3.60 5.93 30.60 0.18 -3.42 16 3 C -0.12 -4.39 5.54 30.59 0.17 -4.22 16 4 C 0.10 4.25 4.23 86.38 0.37 4.61 16 5 N -0.48 -22.73 2.11 -635.54 -1.34 -24.07 16 6 C -0.34 -17.82 8.88 84.04 0.75 -17.07 16 7 H 0.08 4.52 7.52 -2.91 -0.02 4.50 16 8 C 0.03 1.80 5.33 84.93 0.45 2.25 16 9 N -0.90 -49.61 13.96 21.66 0.30 -49.31 16 10 Si 0.92 42.03 25.02 68.60 1.72 43.75 16 11 H -0.26 -10.98 6.73 99.48 0.67 -10.31 16 12 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 13 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 14 C 0.49 22.53 7.61 87.66 0.67 23.20 16 15 O -0.61 -29.66 15.60 -3.05 -0.05 -29.71 16 16 C -0.08 -3.13 4.24 29.10 0.12 -3.01 16 17 C -0.10 -3.69 4.39 -19.77 -0.09 -3.78 16 18 C -0.11 -3.37 9.68 22.25 0.22 -3.16 16 19 C -0.13 -3.12 10.04 22.28 0.22 -2.90 16 20 C -0.11 -2.50 10.04 22.25 0.22 -2.27 16 21 C -0.15 -4.23 9.99 22.36 0.22 -4.01 16 22 C 0.09 3.13 6.68 22.50 0.15 3.28 16 23 O -0.51 -18.14 12.63 -92.49 -1.17 -19.31 16 24 H 0.05 1.32 8.14 -2.38 -0.02 1.30 16 25 H 0.05 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 27 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.07 1.89 8.14 -2.39 -0.02 1.88 16 29 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 30 H 0.05 2.23 8.14 -2.39 -0.02 2.21 16 31 H 0.06 2.55 3.56 -2.39 -0.01 2.55 16 32 H 0.07 2.88 7.36 -2.38 -0.02 2.86 16 33 H 0.28 14.45 8.31 -92.71 -0.77 13.68 16 34 H 0.10 3.74 7.97 -2.39 -0.02 3.72 16 35 H 0.09 3.99 7.38 -2.38 -0.02 3.97 16 36 H 0.13 3.66 8.06 -2.91 -0.02 3.63 16 37 H 0.15 2.67 8.06 -2.91 -0.02 2.64 16 38 H 0.16 2.43 8.06 -2.91 -0.02 2.41 16 39 H 0.14 3.28 8.06 -2.91 -0.02 3.25 16 40 H 0.40 12.35 9.06 -74.06 -0.67 11.68 16 Total: -1.00 -63.38 333.13 4.16 -59.22 By element: Atomic # 1 Polarization: 32.44 SS G_CDS: 0.33 Total: 32.77 kcal Atomic # 6 Polarization: -17.71 SS G_CDS: 4.37 Total: -13.34 kcal Atomic # 7 Polarization: -72.34 SS G_CDS: -1.04 Total: -73.38 kcal Atomic # 8 Polarization: -47.80 SS G_CDS: -1.22 Total: -49.02 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 1.72 Total: 43.75 kcal Total: -63.38 4.16 -59.22 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144256967.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.504 kcal (2) G-P(sol) polarization free energy of solvation -63.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.884 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.223 kcal (6) G-S(sol) free energy of system = (1) + (5) -79.727 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds