Wall clock time and date at job start Mon Mar 30 2020 01:56:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.47178 * 2 1 4 4 C 1.52992 * 109.46782 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47069 * 179.97438 * 4 3 2 6 6 C 1.36902 * 120.00363 * 265.77917 * 5 4 3 7 7 H 1.07996 * 120.00028 * 144.80746 * 6 5 4 8 8 C 1.39024 * 119.99569 * 324.80964 * 6 5 4 9 9 N 1.31382 * 119.99983 * 159.48998 * 8 6 5 10 10 Si 1.86799 * 120.00154 * 339.48640 * 8 6 5 11 11 H 1.48498 * 109.47085 * 89.27268 * 10 8 6 12 12 H 1.48501 * 109.47137 * 209.27337 * 10 8 6 13 13 H 1.48497 * 109.47309 * 329.27290 * 10 8 6 14 14 C 1.34775 * 119.99764 * 85.77338 * 5 4 3 15 15 O 1.21627 * 120.00258 * 5.62420 * 14 5 4 16 16 C 1.47426 * 120.00173 * 185.61749 * 14 5 4 17 17 C 1.39769 * 120.19444 * 320.96270 * 16 14 5 18 18 C 1.37776 * 119.89912 * 179.97438 * 17 16 14 19 19 C 1.38568 * 120.30687 * 359.97438 * 18 17 16 20 20 C 1.50695 * 119.79883 * 179.97438 * 19 18 17 21 21 C 1.38072 * 120.40074 * 0.04373 * 19 18 17 22 22 C 1.38683 * 120.09050 * 359.95297 * 21 19 18 23 23 O 1.35663 * 120.15357 * 180.29634 * 22 21 19 24 24 H 1.09000 * 109.46663 * 59.99878 * 1 2 3 25 25 H 1.08994 * 109.47325 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46737 * 300.00455 * 1 2 3 27 27 H 1.08990 * 109.47079 * 239.99700 * 2 1 3 28 28 H 1.09004 * 109.46814 * 119.99617 * 2 1 3 29 29 H 1.08999 * 109.46812 * 59.99774 * 3 2 1 30 30 H 1.08994 * 109.46749 * 299.99652 * 3 2 1 31 31 H 1.08999 * 109.47517 * 60.00346 * 4 3 2 32 32 H 1.08997 * 109.47778 * 299.99657 * 4 3 2 33 33 H 0.97001 * 120.00016 * 179.97438 * 9 8 6 34 34 H 1.07995 * 120.04895 * 359.97438 * 17 16 14 35 35 H 1.08001 * 119.84627 * 179.97438 * 18 17 16 36 36 H 1.09000 * 109.47507 * 89.99558 * 20 19 18 37 37 H 1.08995 * 109.47399 * 209.99708 * 20 19 18 38 38 H 1.09001 * 109.47492 * 330.00278 * 20 19 18 39 39 H 1.07997 * 119.95456 * 180.02562 * 21 19 18 40 40 H 0.96693 * 114.00026 * 269.72470 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0585 2.8237 0.0000 6 6 4.3695 3.4393 -1.1826 7 1 4.1793 4.4950 -1.3081 8 6 4.9300 2.7054 -2.2218 9 7 4.8617 3.1546 -3.4546 10 14 5.7803 1.0808 -1.8654 11 1 4.7883 -0.0222 -1.9321 12 1 6.8468 0.8490 -2.8724 13 1 6.3818 1.1242 -0.5084 14 6 4.2015 3.4884 1.1637 15 8 4.0238 2.9113 2.2195 16 6 4.5735 4.9149 1.1570 17 6 5.5086 5.3931 0.2348 18 6 5.8514 6.7276 0.2336 19 6 5.2729 7.5990 1.1425 20 6 5.6567 9.0562 1.1313 21 6 4.3481 7.1400 2.0591 22 6 3.9908 5.8000 2.0750 23 8 3.0778 5.3488 2.9712 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9564 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9338 0.9285 -0.8891 32 1 3.9331 0.9288 0.8908 33 1 5.2532 2.6427 -4.1796 34 1 5.9618 4.7177 -0.4756 35 1 6.5744 7.0961 -0.4791 36 1 4.9927 9.6018 0.4608 37 1 5.5695 9.4626 2.1389 38 1 6.6855 9.1584 0.7860 39 1 3.9014 7.8255 2.7639 40 1 3.4616 5.0481 3.8062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001148504591.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:56:00 Heat of formation + Delta-G solvation = -54.321278 kcal Electronic energy + Delta-G solvation = -22066.493701 eV Core-core repulsion = 18846.519812 eV Total energy + Delta-G solvation = -3219.973889 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -39.81357 -38.15877 -36.41554 -35.42937 -34.10515 -32.17162 -31.91277 -29.42121 -28.78287 -26.86545 -24.93912 -23.50976 -22.04431 -21.41364 -20.72000 -19.26811 -17.83566 -17.09773 -16.30822 -15.71510 -14.98317 -14.82982 -14.72313 -14.62263 -13.93183 -13.72576 -13.37499 -13.13848 -13.05002 -12.74978 -12.64678 -12.30898 -12.28243 -11.91104 -11.48879 -11.41535 -11.28344 -11.11646 -10.98037 -10.68834 -10.59747 -10.35654 -10.09937 -9.99041 -9.71655 -9.20660 -8.62497 -8.27002 -8.02023 -7.82958 -6.54177 -4.09450 1.51058 1.84183 2.98707 3.16603 3.23622 3.65245 4.04848 4.16718 4.40007 4.69606 4.94367 5.19085 5.30671 5.36965 5.38795 5.53419 5.57472 5.67783 5.73232 5.78064 5.87790 5.97793 6.12036 6.15086 6.18580 6.23446 6.24532 6.34033 6.39873 6.51045 6.56497 6.77533 6.82387 6.91529 6.99452 7.03565 7.28662 7.37362 8.00076 8.16864 8.21254 8.86689 9.29163 9.62932 10.54850 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015791 B = 0.006920 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.736129 B = 4045.408767 C = 5235.411987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.122 4.122 3 C -0.126 4.126 4 C 0.096 3.904 5 N -0.455 5.455 6 C -0.347 4.347 7 H 0.112 0.888 8 C 0.065 3.935 9 N -0.855 5.855 10 Si 0.877 3.123 11 H -0.270 1.270 12 H -0.288 1.288 13 H -0.261 1.261 14 C 0.524 3.476 15 O -0.592 6.592 16 C -0.130 4.130 17 C -0.044 4.044 18 C -0.148 4.148 19 C -0.068 4.068 20 C -0.111 4.111 21 C -0.168 4.168 22 C 0.145 3.855 23 O -0.490 6.490 24 H 0.053 0.947 25 H 0.048 0.952 26 H 0.052 0.948 27 H 0.058 0.942 28 H 0.058 0.942 29 H 0.063 0.937 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.068 0.932 33 H 0.276 0.724 34 H 0.158 0.842 35 H 0.122 0.878 36 H 0.069 0.931 37 H 0.062 0.938 38 H 0.065 0.935 39 H 0.123 0.877 40 H 0.390 0.610 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.016 3.552 5.936 6.918 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.161 4.161 3 C -0.164 4.164 4 C -0.026 4.026 5 N -0.173 5.173 6 C -0.474 4.474 7 H 0.130 0.870 8 C -0.142 4.142 9 N -0.489 5.489 10 Si 0.705 3.295 11 H -0.197 1.197 12 H -0.215 1.215 13 H -0.186 1.186 14 C 0.315 3.685 15 O -0.478 6.478 16 C -0.134 4.134 17 C -0.063 4.063 18 C -0.166 4.166 19 C -0.068 4.068 20 C -0.168 4.168 21 C -0.187 4.187 22 C 0.099 3.901 23 O -0.300 6.300 24 H 0.072 0.928 25 H 0.067 0.933 26 H 0.071 0.929 27 H 0.077 0.923 28 H 0.077 0.923 29 H 0.081 0.919 30 H 0.087 0.913 31 H 0.089 0.911 32 H 0.086 0.914 33 H 0.087 0.913 34 H 0.175 0.825 35 H 0.140 0.860 36 H 0.087 0.913 37 H 0.081 0.919 38 H 0.084 0.916 39 H 0.140 0.860 40 H 0.246 0.754 Dipole moment (debyes) X Y Z Total from point charges -0.466 3.360 5.772 6.695 hybrid contribution 0.660 -0.934 0.140 1.152 sum 0.194 2.426 5.912 6.393 Atomic orbital electron populations 1.21739 0.96127 1.00861 1.01801 1.21475 0.95629 0.97397 1.01567 1.21843 0.95848 0.96051 1.02672 1.21777 0.94273 0.85068 1.01498 1.43602 1.56210 1.11604 1.05921 1.19272 1.41800 0.97406 0.88888 0.87020 1.25289 0.96161 0.98198 0.94601 1.69739 1.40723 1.39732 0.98752 0.87044 0.79604 0.83689 0.79199 1.19746 1.21538 1.18563 1.17916 0.80532 0.86431 0.83661 1.90603 1.56549 1.69476 1.31183 1.20358 0.99703 0.94458 0.98864 1.21954 0.93881 0.95612 0.94846 1.21008 1.02175 0.93610 0.99836 1.19807 0.96013 0.95821 0.95189 1.20773 1.01613 0.92250 1.02134 1.21025 1.00530 0.94934 1.02166 1.18455 0.89465 0.90743 0.91438 1.84665 1.32695 1.84152 1.28513 0.92781 0.93268 0.92868 0.92304 0.92278 0.91866 0.91293 0.91113 0.91382 0.91333 0.82474 0.85994 0.91273 0.91904 0.91591 0.85953 0.75359 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.07 9.91 37.16 0.37 -1.70 16 2 C -0.12 -2.01 5.93 -26.72 -0.16 -2.17 16 3 C -0.13 -2.52 5.51 -26.73 -0.15 -2.67 16 4 C 0.10 2.17 4.05 -4.04 -0.02 2.16 16 5 N -0.45 -11.13 2.23 -116.03 -0.26 -11.39 16 6 C -0.35 -8.85 7.06 -15.00 -0.11 -8.95 16 7 H 0.11 3.02 6.18 -52.49 -0.32 2.69 16 8 C 0.07 1.67 5.33 -17.45 -0.09 1.57 16 9 N -0.85 -22.76 13.96 55.50 0.77 -21.99 16 10 Si 0.88 20.04 25.05 -169.99 -4.26 15.78 16 11 H -0.27 -5.93 6.41 56.52 0.36 -5.57 16 12 H -0.29 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.26 -6.11 7.11 56.52 0.40 -5.71 16 14 C 0.52 12.78 7.12 -12.52 -0.09 12.69 16 15 O -0.59 -15.09 15.73 -10.93 -0.17 -15.26 16 16 C -0.13 -2.84 5.38 -104.84 -0.56 -3.41 16 17 C -0.04 -0.90 7.64 -39.18 -0.30 -1.20 16 18 C -0.15 -2.51 9.67 -39.63 -0.38 -2.89 16 19 C -0.07 -1.04 5.88 -104.56 -0.62 -1.66 16 20 C -0.11 -1.25 10.00 36.00 0.36 -0.89 16 21 C -0.17 -2.75 9.62 -39.48 -0.38 -3.13 16 22 C 0.14 2.82 6.69 -38.68 -0.26 2.56 16 23 O -0.49 -9.23 12.26 -34.87 -0.43 -9.65 16 24 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 25 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 26 H 0.05 0.73 8.14 -51.93 -0.42 0.31 16 27 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 28 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.06 1.33 8.14 -51.93 -0.42 0.90 16 30 H 0.07 1.45 8.14 -51.93 -0.42 1.03 16 31 H 0.07 1.61 2.84 -51.93 -0.15 1.47 16 32 H 0.07 1.52 7.48 -51.93 -0.39 1.14 16 33 H 0.28 6.90 8.31 -40.82 -0.34 6.56 16 34 H 0.16 3.41 5.98 -52.49 -0.31 3.10 16 35 H 0.12 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 37 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 38 H 0.07 0.66 8.08 -51.93 -0.42 0.24 16 39 H 0.12 1.69 8.06 -52.49 -0.42 1.27 16 40 H 0.39 5.84 9.06 45.56 0.41 6.25 16 LS Contribution 326.89 15.07 4.93 4.93 Total: -1.00 -29.55 326.89 -6.80 -36.35 By element: Atomic # 1 Polarization: 15.94 SS G_CDS: -5.00 Total: 10.94 kcal Atomic # 6 Polarization: -7.31 SS G_CDS: -2.38 Total: -9.69 kcal Atomic # 7 Polarization: -33.90 SS G_CDS: 0.52 Total: -33.38 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.60 Total: -24.92 kcal Atomic # 14 Polarization: 20.04 SS G_CDS: -4.26 Total: 15.78 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.55 -6.80 -36.35 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148504591.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -17.976 kcal (2) G-P(sol) polarization free energy of solvation -29.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.521 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.345 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.321 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds