Wall clock time and date at job start Mon Mar 30 2020 01:55:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53008 * 109.47178 * 2 1 4 4 C 1.52992 * 109.46782 * 179.97438 * 3 2 1 5 5 N 1.46507 * 109.47069 * 179.97438 * 4 3 2 6 6 C 1.36902 * 120.00363 * 265.77917 * 5 4 3 7 7 H 1.07996 * 120.00028 * 144.80746 * 6 5 4 8 8 C 1.39024 * 119.99569 * 324.80964 * 6 5 4 9 9 N 1.31382 * 119.99983 * 159.48998 * 8 6 5 10 10 Si 1.86799 * 120.00154 * 339.48640 * 8 6 5 11 11 H 1.48498 * 109.47085 * 89.27268 * 10 8 6 12 12 H 1.48501 * 109.47137 * 209.27337 * 10 8 6 13 13 H 1.48497 * 109.47309 * 329.27290 * 10 8 6 14 14 C 1.34775 * 119.99764 * 85.77338 * 5 4 3 15 15 O 1.21627 * 120.00258 * 5.62420 * 14 5 4 16 16 C 1.47426 * 120.00173 * 185.61749 * 14 5 4 17 17 C 1.39769 * 120.19444 * 320.96270 * 16 14 5 18 18 C 1.37776 * 119.89912 * 179.97438 * 17 16 14 19 19 C 1.38568 * 120.30687 * 359.97438 * 18 17 16 20 20 C 1.50695 * 119.79883 * 179.97438 * 19 18 17 21 21 C 1.38072 * 120.40074 * 0.04373 * 19 18 17 22 22 C 1.38683 * 120.09050 * 359.95297 * 21 19 18 23 23 O 1.35663 * 120.15357 * 180.29634 * 22 21 19 24 24 H 1.09000 * 109.46663 * 59.99878 * 1 2 3 25 25 H 1.08994 * 109.47325 * 179.97438 * 1 2 3 26 26 H 1.08997 * 109.46737 * 300.00455 * 1 2 3 27 27 H 1.08990 * 109.47079 * 239.99700 * 2 1 3 28 28 H 1.09004 * 109.46814 * 119.99617 * 2 1 3 29 29 H 1.08999 * 109.46812 * 59.99774 * 3 2 1 30 30 H 1.08994 * 109.46749 * 299.99652 * 3 2 1 31 31 H 1.08999 * 109.47517 * 60.00346 * 4 3 2 32 32 H 1.08997 * 109.47778 * 299.99657 * 4 3 2 33 33 H 0.97001 * 120.00016 * 179.97438 * 9 8 6 34 34 H 1.07995 * 120.04895 * 359.97438 * 17 16 14 35 35 H 1.08001 * 119.84627 * 179.97438 * 18 17 16 36 36 H 1.09000 * 109.47507 * 89.99558 * 20 19 18 37 37 H 1.08995 * 109.47399 * 209.99708 * 20 19 18 38 38 H 1.09001 * 109.47492 * 330.00278 * 20 19 18 39 39 H 1.07997 * 119.95456 * 180.02562 * 21 19 18 40 40 H 0.96693 * 114.00026 * 269.72470 * 23 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0401 1.4426 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0585 2.8237 0.0000 6 6 4.3695 3.4393 -1.1826 7 1 4.1793 4.4950 -1.3081 8 6 4.9300 2.7054 -2.2218 9 7 4.8617 3.1546 -3.4546 10 14 5.7803 1.0808 -1.8654 11 1 4.7883 -0.0222 -1.9321 12 1 6.8468 0.8490 -2.8724 13 1 6.3818 1.1242 -0.5084 14 6 4.2015 3.4884 1.1637 15 8 4.0238 2.9113 2.2195 16 6 4.5735 4.9149 1.1570 17 6 5.5086 5.3931 0.2348 18 6 5.8514 6.7276 0.2336 19 6 5.2729 7.5990 1.1425 20 6 5.6567 9.0562 1.1313 21 6 4.3481 7.1400 2.0591 22 6 3.9908 5.8000 2.0750 23 8 3.0778 5.3488 2.9712 24 1 -0.3633 0.5139 -0.8900 25 1 -0.3633 -1.0276 -0.0005 26 1 -0.3633 0.5139 0.8899 27 1 1.8933 -0.5138 -0.8899 28 1 1.8933 -0.5138 0.8901 29 1 1.6767 1.9564 0.8900 30 1 1.6768 1.9563 -0.8900 31 1 3.9338 0.9285 -0.8891 32 1 3.9331 0.9288 0.8908 33 1 5.2532 2.6427 -4.1796 34 1 5.9618 4.7177 -0.4756 35 1 6.5744 7.0961 -0.4791 36 1 4.9927 9.6018 0.4608 37 1 5.5695 9.4626 2.1389 38 1 6.6855 9.1584 0.7860 39 1 3.9014 7.8255 2.7639 40 1 3.4616 5.0481 3.8062 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001148504591.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:55:59 Heat of formation + Delta-G solvation = -72.033503 kcal Electronic energy + Delta-G solvation = -22067.261761 eV Core-core repulsion = 18846.519812 eV Total energy + Delta-G solvation = -3220.741949 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.44833 -39.80355 -37.86570 -37.17828 -35.72555 -33.91534 -33.45288 -30.81555 -30.27781 -28.19850 -26.83689 -25.02115 -23.48313 -22.85688 -22.18716 -21.06186 -19.58584 -18.57776 -18.13724 -17.40031 -16.53740 -16.46180 -16.36187 -16.11770 -15.58436 -15.26164 -14.75563 -14.60743 -14.40282 -14.32610 -14.24046 -13.95567 -13.44465 -13.34795 -13.09634 -12.94774 -12.76211 -12.56381 -12.28937 -12.23832 -12.08455 -11.91517 -11.77103 -11.53941 -11.49356 -11.04438 -10.48607 -9.83936 -9.64495 -9.43210 -8.52773 -6.10542 0.04358 0.42743 1.14117 1.28377 1.38219 1.91962 2.13618 2.49825 2.70881 3.06321 3.32880 3.83382 3.95898 3.98776 4.06432 4.13568 4.20570 4.28666 4.41749 4.47091 4.51531 4.70681 4.75446 4.82673 4.87699 4.90706 4.95085 5.00506 5.10939 5.17249 5.27337 5.29551 5.36593 5.41080 5.44313 5.54748 5.64716 5.96126 6.03195 6.22400 6.82898 6.89415 7.34420 7.70891 8.59589 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.015791 B = 0.006920 C = 0.005347 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1772.736129 B = 4045.408767 C = 5235.411987 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.119 4.119 3 C -0.116 4.116 4 C 0.090 3.910 5 N -0.466 5.466 6 C -0.341 4.341 7 H 0.089 0.911 8 C 0.034 3.966 9 N -0.888 5.888 10 Si 0.921 3.079 11 H -0.252 1.252 12 H -0.280 1.280 13 H -0.274 1.274 14 C 0.517 3.483 15 O -0.612 6.612 16 C -0.173 4.173 17 C -0.058 4.058 18 C -0.150 4.150 19 C -0.051 4.051 20 C -0.109 4.109 21 C -0.162 4.162 22 C 0.136 3.864 23 O -0.502 6.502 24 H 0.052 0.948 25 H 0.074 0.926 26 H 0.052 0.948 27 H 0.063 0.937 28 H 0.068 0.932 29 H 0.048 0.952 30 H 0.053 0.947 31 H 0.070 0.930 32 H 0.066 0.934 33 H 0.281 0.719 34 H 0.132 0.868 35 H 0.146 0.854 36 H 0.082 0.918 37 H 0.085 0.915 38 H 0.082 0.918 39 H 0.155 0.845 40 H 0.404 0.596 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.009 4.552 6.626 8.039 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.157 4.157 3 C -0.155 4.155 4 C -0.032 4.032 5 N -0.185 5.185 6 C -0.468 4.468 7 H 0.107 0.893 8 C -0.171 4.171 9 N -0.525 5.525 10 Si 0.748 3.252 11 H -0.178 1.178 12 H -0.207 1.207 13 H -0.199 1.199 14 C 0.309 3.691 15 O -0.499 6.499 16 C -0.177 4.177 17 C -0.077 4.077 18 C -0.168 4.168 19 C -0.052 4.052 20 C -0.166 4.166 21 C -0.181 4.181 22 C 0.090 3.910 23 O -0.314 6.314 24 H 0.071 0.929 25 H 0.093 0.907 26 H 0.072 0.928 27 H 0.082 0.918 28 H 0.087 0.913 29 H 0.067 0.933 30 H 0.072 0.928 31 H 0.087 0.913 32 H 0.084 0.916 33 H 0.091 0.909 34 H 0.149 0.851 35 H 0.164 0.836 36 H 0.101 0.899 37 H 0.103 0.897 38 H 0.101 0.899 39 H 0.173 0.827 40 H 0.262 0.738 Dipole moment (debyes) X Y Z Total from point charges -0.445 4.353 6.464 7.806 hybrid contribution 0.666 -1.099 0.008 1.285 sum 0.221 3.254 6.472 7.247 Atomic orbital electron populations 1.21713 0.94087 1.02561 1.01783 1.21478 0.97421 0.94550 1.02271 1.21751 0.94111 0.98532 1.01076 1.21912 0.95890 0.84211 1.01164 1.43737 1.56746 1.12348 1.05692 1.19046 1.41830 0.96659 0.89270 0.89344 1.25716 0.96393 1.00730 0.94265 1.69785 1.42018 1.41248 0.99427 0.86313 0.79201 0.81364 0.78333 1.17843 1.20673 1.19877 1.18460 0.79693 0.87701 0.83274 1.90552 1.57447 1.70331 1.31619 1.20380 1.02234 0.93577 1.01460 1.21754 0.94345 0.96981 0.94622 1.21288 1.02548 0.92318 1.00630 1.20322 0.93951 0.97894 0.93019 1.20886 1.02824 0.88810 1.04043 1.21367 1.00185 0.93815 1.02695 1.18690 0.89453 0.91774 0.91063 1.84613 1.33170 1.84400 1.29262 0.92924 0.90686 0.92837 0.91800 0.91339 0.93347 0.92847 0.91270 0.91600 0.90856 0.85067 0.83635 0.89913 0.89665 0.89942 0.82701 0.73754 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.79 9.91 71.98 0.71 -3.08 16 2 C -0.12 -3.78 5.93 30.60 0.18 -3.60 16 3 C -0.12 -4.74 5.51 30.59 0.17 -4.57 16 4 C 0.09 4.15 4.05 86.38 0.35 4.50 16 5 N -0.47 -23.69 2.23 -639.26 -1.43 -25.11 16 6 C -0.34 -18.11 7.06 84.09 0.59 -17.51 16 7 H 0.09 5.05 6.18 -2.91 -0.02 5.03 16 8 C 0.03 1.77 5.33 84.95 0.45 2.22 16 9 N -0.89 -48.32 13.96 21.68 0.30 -48.02 16 10 Si 0.92 41.65 25.05 68.60 1.72 43.37 16 11 H -0.25 -10.61 6.41 99.48 0.64 -9.97 16 12 H -0.28 -12.22 7.11 99.48 0.71 -11.52 16 13 H -0.27 -12.84 7.11 99.48 0.71 -12.14 16 14 C 0.52 26.20 7.12 86.66 0.62 26.81 16 15 O -0.61 -32.18 15.73 11.36 0.18 -32.00 16 16 C -0.17 -7.78 5.38 -20.01 -0.11 -7.89 16 17 C -0.06 -2.43 7.64 22.53 0.17 -2.26 16 18 C -0.15 -4.91 9.67 22.24 0.22 -4.70 16 19 C -0.05 -1.43 5.88 -19.83 -0.12 -1.55 16 20 C -0.11 -1.96 10.00 71.23 0.71 -1.25 16 21 C -0.16 -4.92 9.62 22.34 0.21 -4.71 16 22 C 0.14 5.26 6.69 22.86 0.15 5.41 16 23 O -0.50 -18.85 12.26 -74.32 -0.91 -19.76 16 24 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 25 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 26 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 27 H 0.06 1.96 8.14 -2.39 -0.02 1.94 16 28 H 0.07 2.04 8.14 -2.39 -0.02 2.02 16 29 H 0.05 2.08 8.14 -2.39 -0.02 2.06 16 30 H 0.05 2.31 8.14 -2.39 -0.02 2.29 16 31 H 0.07 3.17 2.84 -2.39 -0.01 3.16 16 32 H 0.07 3.01 7.48 -2.39 -0.02 2.99 16 33 H 0.28 14.23 8.31 -92.71 -0.77 13.46 16 34 H 0.13 6.05 5.98 -2.91 -0.02 6.04 16 35 H 0.15 3.99 8.06 -2.91 -0.02 3.96 16 36 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 38 H 0.08 1.27 8.08 -2.39 -0.02 1.25 16 39 H 0.16 3.67 8.06 -2.91 -0.02 3.64 16 40 H 0.40 12.07 9.06 -74.06 -0.67 11.40 16 Total: -1.00 -65.69 326.89 4.49 -61.20 By element: Atomic # 1 Polarization: 32.17 SS G_CDS: 0.31 Total: 32.48 kcal Atomic # 6 Polarization: -16.48 SS G_CDS: 4.32 Total: -12.16 kcal Atomic # 7 Polarization: -72.01 SS G_CDS: -1.13 Total: -73.13 kcal Atomic # 8 Polarization: -51.03 SS G_CDS: -0.73 Total: -51.77 kcal Atomic # 14 Polarization: 41.65 SS G_CDS: 1.72 Total: 43.37 kcal Total: -65.69 4.49 -61.20 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001148504591.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.831 kcal (2) G-P(sol) polarization free energy of solvation -65.692 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.523 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.490 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.202 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.034 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds