Wall clock time and date at job start Mon Mar 30 2020 01:54:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34835 * 117.00332 * 2 1 4 4 O 1.21565 * 120.00156 * 359.97438 * 3 2 1 5 5 C 1.47013 * 120.00115 * 180.02562 * 3 2 1 6 6 C 1.39562 * 120.48537 * 354.31883 * 5 3 2 7 7 C 1.37806 * 120.14024 * 179.97438 * 6 5 3 8 8 C 1.39413 * 121.19492 * 0.03220 * 7 6 5 9 9 N 1.39149 * 119.49781 * 179.97438 * 8 7 6 10 10 C 1.46502 * 120.00033 * 359.97438 * 9 8 7 11 11 C 1.53000 * 109.47113 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47523 * 64.99824 * 11 10 9 13 13 C 1.53001 * 109.47459 * 184.99930 * 11 10 9 14 14 C 1.38430 * 121.00193 * 359.73288 * 8 7 6 15 15 C 1.40504 * 119.76898 * 0.49775 * 14 8 7 16 16 C 1.40946 * 120.56805 * 179.79288 * 15 14 8 17 17 H 1.08002 * 119.99870 * 147.19846 * 16 15 14 18 18 C 1.40244 * 119.99749 * 327.47053 * 16 15 14 19 19 N 1.30635 * 119.99997 * 350.50519 * 18 16 15 20 20 Si 1.86800 * 119.99742 * 170.50472 * 18 16 15 21 21 H 1.48497 * 109.47340 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47090 * 120.00395 * 20 18 16 23 23 H 1.48507 * 109.46828 * 240.00117 * 20 18 16 24 24 H 1.09009 * 109.47360 * 60.00050 * 1 2 3 25 25 H 1.08999 * 109.47619 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47334 * 300.00651 * 1 2 3 27 27 H 1.08006 * 119.93434 * 359.97438 * 6 5 3 28 28 H 1.08005 * 119.39906 * 180.02562 * 7 6 5 29 29 H 0.97001 * 120.00470 * 179.97438 * 9 8 7 30 30 H 1.09002 * 109.47223 * 299.99502 * 10 9 8 31 31 H 1.08996 * 109.47259 * 60.00333 * 10 9 8 32 32 H 1.08997 * 109.47327 * 304.99522 * 11 10 9 33 33 H 1.08996 * 109.46814 * 299.99929 * 12 11 10 34 34 H 1.09002 * 109.46764 * 59.99919 * 12 11 10 35 35 H 1.08996 * 109.47206 * 180.02562 * 12 11 10 36 36 H 1.09004 * 109.47362 * 59.99538 * 13 11 10 37 37 H 1.08994 * 109.47763 * 180.02562 * 13 11 10 38 38 H 1.09002 * 109.46980 * 300.00173 * 13 11 10 39 39 H 1.07999 * 120.11816 * 180.29345 * 14 8 7 40 40 H 0.97006 * 120.00102 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4022 2.2209 -0.0005 5 6 3.5323 1.2782 -0.0006 6 6 4.3020 0.1201 0.1179 7 6 5.6777 0.2004 0.1161 8 6 6.3293 1.4272 -0.0023 9 7 7.7202 1.4673 0.0004 10 6 8.4886 0.2264 0.1275 11 6 9.9842 0.5480 0.1034 12 6 10.3476 1.3773 1.3367 13 6 10.7862 -0.7550 0.1105 14 6 5.6136 2.6055 -0.1275 15 6 4.2089 2.5721 -0.1254 16 6 3.4635 3.7620 -0.2474 17 1 2.5111 3.7528 -0.7567 18 6 3.9611 4.9591 0.2876 19 7 5.0175 4.9419 1.0558 20 14 3.1132 6.5782 -0.0985 21 1 1.9477 6.3279 -0.9839 22 1 2.6489 7.2072 1.1641 23 1 4.0687 7.4867 -0.7819 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 3.8185 -0.8412 0.2113 28 1 6.2616 -0.7035 0.2081 29 1 8.1811 2.3168 -0.0819 30 1 8.2374 -0.2616 1.0693 31 1 8.2460 -0.4378 -0.7019 32 1 10.2196 1.1144 -0.7976 33 1 9.7764 2.3055 1.3315 34 1 10.1123 0.8107 2.2377 35 1 11.4130 1.6067 1.3192 36 1 10.5274 -1.3459 -0.7681 37 1 11.8517 -0.5259 0.0938 38 1 10.5509 -1.3215 1.0115 39 1 6.1330 3.5475 -0.2230 40 1 5.3619 5.7699 1.4256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001161650980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:13 Heat of formation + Delta-G solvation = -81.284359 kcal Electronic energy + Delta-G solvation = -21304.990513 eV Core-core repulsion = 18083.847417 eV Total energy + Delta-G solvation = -3221.143096 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.11135 -38.01203 -36.37709 -35.11843 -33.91228 -32.82305 -29.66147 -28.74848 -27.18349 -27.06844 -25.49006 -24.71756 -21.91066 -21.11437 -19.91458 -19.34039 -17.34940 -16.54899 -15.96853 -15.65888 -15.33194 -15.22626 -14.82103 -14.66179 -13.62811 -13.44717 -13.23864 -12.86475 -12.75092 -12.48933 -12.40384 -12.22504 -12.13837 -11.55991 -11.46867 -11.22423 -11.16149 -11.04246 -10.91648 -10.71355 -10.67456 -10.51961 -10.20076 -9.85205 -9.57015 -9.36402 -8.87330 -8.73489 -7.37703 -6.84721 -6.31285 -4.44112 2.38922 2.85481 3.09304 3.18964 3.27324 3.86974 3.95810 4.07052 4.22818 4.68918 4.86660 4.92470 5.11462 5.56737 5.61229 5.63407 5.66455 5.71567 5.75430 5.84033 5.88878 5.91224 6.04738 6.09378 6.16134 6.27734 6.36028 6.38331 6.52605 6.85645 7.00232 7.17504 7.26751 7.47386 7.60795 7.71138 7.87313 8.05000 8.41931 8.56655 8.71199 8.82499 8.94579 9.22860 10.12237 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.005726 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.027903 B = 4889.100677 C = 6799.793144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 O -0.376 6.376 3 C 0.505 3.495 4 O -0.524 6.524 5 C -0.288 4.288 6 C 0.002 3.998 7 C -0.305 4.305 8 C 0.244 3.756 9 N -0.754 5.754 10 C 0.137 3.863 11 C -0.108 4.108 12 C -0.147 4.147 13 C -0.143 4.143 14 C -0.239 4.239 15 C 0.183 3.817 16 C -0.415 4.415 17 H 0.104 0.896 18 C 0.071 3.929 19 N -0.782 5.782 20 Si 0.916 3.084 21 H -0.257 1.257 22 H -0.273 1.273 23 H -0.273 1.273 24 H 0.052 0.948 25 H 0.085 0.915 26 H 0.052 0.948 27 H 0.102 0.898 28 H 0.093 0.907 29 H 0.391 0.609 30 H 0.051 0.949 31 H 0.050 0.950 32 H 0.072 0.928 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.050 0.950 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.056 0.944 39 H 0.120 0.880 40 H 0.281 0.719 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.494 -6.350 -0.915 9.129 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 O -0.295 6.295 3 C 0.357 3.643 4 O -0.416 6.416 5 C -0.292 4.292 6 C -0.017 4.017 7 C -0.327 4.327 8 C 0.142 3.858 9 N -0.386 5.386 10 C 0.012 3.988 11 C -0.127 4.127 12 C -0.204 4.204 13 C -0.201 4.201 14 C -0.263 4.263 15 C 0.179 3.821 16 C -0.443 4.443 17 H 0.121 0.879 18 C -0.148 4.148 19 N -0.407 5.407 20 Si 0.740 3.260 21 H -0.180 1.180 22 H -0.198 1.198 23 H -0.198 1.198 24 H 0.071 0.929 25 H 0.104 0.896 26 H 0.071 0.929 27 H 0.120 0.880 28 H 0.112 0.888 29 H 0.225 0.775 30 H 0.069 0.931 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.070 0.930 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.075 0.925 39 H 0.138 0.862 40 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 6.470 -6.120 -0.748 8.938 hybrid contribution -0.316 1.041 0.044 1.089 sum 6.154 -5.079 -0.704 8.011 Atomic orbital electron populations 1.22938 0.78958 1.01827 1.01641 1.86596 1.21261 1.35378 1.86298 1.21313 0.89608 0.80069 0.73340 1.90725 1.66930 1.35245 1.48664 1.19661 0.86563 0.95027 1.27949 1.20599 0.92963 0.95963 0.92151 1.19807 0.93914 0.94881 1.24103 1.17739 0.81940 0.94220 0.91875 1.44481 1.03395 1.07359 1.83346 1.21186 0.89295 0.87978 1.00355 1.21327 0.94962 0.97190 0.99227 1.21834 1.00694 1.00353 0.97515 1.21759 0.99512 0.96831 1.02000 1.20603 0.93389 0.95100 1.17237 1.18118 0.90695 0.89772 0.83561 1.20181 1.05134 0.90953 1.28038 0.87850 1.26121 0.94150 1.01435 0.93105 1.69770 1.19284 1.29732 1.21871 0.86125 0.80321 0.80154 0.79427 1.17997 1.19847 1.19817 0.92921 0.89609 0.92900 0.87973 0.88849 0.77477 0.93060 0.93142 0.90949 0.92184 0.92611 0.93049 0.92553 0.92633 0.92517 0.86216 0.90828 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.67 10.57 101.05 1.07 1.74 16 2 O -0.38 -7.96 9.85 -40.86 -0.40 -8.37 16 3 C 0.51 12.60 7.85 34.29 0.27 12.87 16 4 O -0.52 -14.15 13.55 -19.31 -0.26 -14.41 16 5 C -0.29 -7.40 6.07 -102.50 -0.62 -8.02 16 6 C 0.00 0.05 9.60 -39.25 -0.38 -0.32 16 7 C -0.30 -6.62 9.24 -39.30 -0.36 -6.98 16 8 C 0.24 5.41 6.63 -84.03 -0.56 4.85 16 9 N -0.75 -13.46 5.43 -58.77 -0.32 -13.78 16 10 C 0.14 1.98 4.27 -4.04 -0.02 1.96 16 11 C -0.11 -1.23 2.96 -90.62 -0.27 -1.50 16 12 C -0.15 -1.66 9.07 37.16 0.34 -1.32 16 13 C -0.14 -1.35 9.19 37.16 0.34 -1.01 16 14 C -0.24 -6.00 8.46 -38.66 -0.33 -6.33 16 15 C 0.18 4.97 5.67 -104.67 -0.59 4.38 16 16 C -0.42 -11.43 7.85 -37.80 -0.30 -11.73 16 17 H 0.10 2.95 5.97 -52.49 -0.31 2.64 16 18 C 0.07 1.81 5.26 -17.31 -0.09 1.72 16 19 N -0.78 -19.94 11.06 55.56 0.61 -19.32 16 20 Si 0.92 19.42 29.57 -169.99 -5.03 14.40 16 21 H -0.26 -5.55 7.11 56.52 0.40 -5.14 16 22 H -0.27 -5.72 7.11 56.52 0.40 -5.32 16 23 H -0.27 -5.52 7.11 56.52 0.40 -5.12 16 24 H 0.05 0.84 8.14 -51.92 -0.42 0.42 16 25 H 0.09 1.06 8.14 -51.93 -0.42 0.64 16 26 H 0.05 0.86 8.14 -51.93 -0.42 0.43 16 27 H 0.10 2.09 7.63 -52.48 -0.40 1.69 16 28 H 0.09 1.80 6.58 -52.48 -0.35 1.45 16 29 H 0.39 6.62 7.64 -40.82 -0.31 6.31 16 30 H 0.05 0.77 7.91 -51.93 -0.41 0.36 16 31 H 0.05 0.74 7.90 -51.93 -0.41 0.33 16 32 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 33 H 0.06 0.75 7.18 -51.93 -0.37 0.38 16 34 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 35 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 37 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 38 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 39 H 0.12 3.07 6.50 -52.49 -0.34 2.72 16 40 H 0.28 6.47 8.29 -40.82 -0.34 6.14 16 LS Contribution 332.32 15.07 5.01 5.01 Total: -1.00 -29.60 332.32 -7.73 -37.33 By element: Atomic # 1 Polarization: 14.67 SS G_CDS: -5.84 Total: 8.83 kcal Atomic # 6 Polarization: -8.19 SS G_CDS: -1.50 Total: -9.68 kcal Atomic # 7 Polarization: -33.40 SS G_CDS: 0.29 Total: -33.10 kcal Atomic # 8 Polarization: -22.11 SS G_CDS: -0.66 Total: -22.78 kcal Atomic # 14 Polarization: 19.42 SS G_CDS: -5.03 Total: 14.40 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.60 -7.73 -37.33 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161650980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -43.956 kcal (2) G-P(sol) polarization free energy of solvation -29.600 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.556 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.728 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.328 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.284 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds