Wall clock time and date at job start Mon Mar 30 2020 01:54:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34835 * 117.00332 * 2 1 4 4 O 1.21565 * 120.00156 * 359.97438 * 3 2 1 5 5 C 1.47013 * 120.00115 * 180.02562 * 3 2 1 6 6 C 1.39562 * 120.48537 * 354.31883 * 5 3 2 7 7 C 1.37806 * 120.14024 * 179.97438 * 6 5 3 8 8 C 1.39413 * 121.19492 * 0.03220 * 7 6 5 9 9 N 1.39149 * 119.49781 * 179.97438 * 8 7 6 10 10 C 1.46502 * 120.00033 * 359.97438 * 9 8 7 11 11 C 1.53000 * 109.47113 * 180.02562 * 10 9 8 12 12 C 1.53000 * 109.47523 * 64.99824 * 11 10 9 13 13 C 1.53001 * 109.47459 * 184.99930 * 11 10 9 14 14 C 1.38430 * 121.00193 * 359.73288 * 8 7 6 15 15 C 1.40504 * 119.76898 * 0.49775 * 14 8 7 16 16 C 1.40946 * 120.56805 * 179.79288 * 15 14 8 17 17 H 1.08002 * 119.99870 * 147.19846 * 16 15 14 18 18 C 1.40244 * 119.99749 * 327.47053 * 16 15 14 19 19 N 1.30635 * 119.99997 * 350.50519 * 18 16 15 20 20 Si 1.86800 * 119.99742 * 170.50472 * 18 16 15 21 21 H 1.48497 * 109.47340 * 0.02562 * 20 18 16 22 22 H 1.48502 * 109.47090 * 120.00395 * 20 18 16 23 23 H 1.48507 * 109.46828 * 240.00117 * 20 18 16 24 24 H 1.09009 * 109.47360 * 60.00050 * 1 2 3 25 25 H 1.08999 * 109.47619 * 179.97438 * 1 2 3 26 26 H 1.08999 * 109.47334 * 300.00651 * 1 2 3 27 27 H 1.08006 * 119.93434 * 359.97438 * 6 5 3 28 28 H 1.08005 * 119.39906 * 180.02562 * 7 6 5 29 29 H 0.97001 * 120.00470 * 179.97438 * 9 8 7 30 30 H 1.09002 * 109.47223 * 299.99502 * 10 9 8 31 31 H 1.08996 * 109.47259 * 60.00333 * 10 9 8 32 32 H 1.08997 * 109.47327 * 304.99522 * 11 10 9 33 33 H 1.08996 * 109.46814 * 299.99929 * 12 11 10 34 34 H 1.09002 * 109.46764 * 59.99919 * 12 11 10 35 35 H 1.08996 * 109.47206 * 180.02562 * 12 11 10 36 36 H 1.09004 * 109.47362 * 59.99538 * 13 11 10 37 37 H 1.08994 * 109.47763 * 180.02562 * 13 11 10 38 38 H 1.09002 * 109.46980 * 300.00173 * 13 11 10 39 39 H 1.07999 * 120.11816 * 180.29345 * 14 8 7 40 40 H 0.97006 * 120.00102 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0642 1.2014 0.0000 4 8 1.4022 2.2209 -0.0005 5 6 3.5323 1.2782 -0.0006 6 6 4.3020 0.1201 0.1179 7 6 5.6777 0.2004 0.1161 8 6 6.3293 1.4272 -0.0023 9 7 7.7202 1.4673 0.0004 10 6 8.4886 0.2264 0.1275 11 6 9.9842 0.5480 0.1034 12 6 10.3476 1.3773 1.3367 13 6 10.7862 -0.7550 0.1105 14 6 5.6136 2.6055 -0.1275 15 6 4.2089 2.5721 -0.1254 16 6 3.4635 3.7620 -0.2474 17 1 2.5111 3.7528 -0.7567 18 6 3.9611 4.9591 0.2876 19 7 5.0175 4.9419 1.0558 20 14 3.1132 6.5782 -0.0985 21 1 1.9477 6.3279 -0.9839 22 1 2.6489 7.2072 1.1641 23 1 4.0687 7.4867 -0.7819 24 1 -0.3634 0.5139 -0.8900 25 1 -0.3634 -1.0276 -0.0005 26 1 -0.3634 0.5139 0.8899 27 1 3.8185 -0.8412 0.2113 28 1 6.2616 -0.7035 0.2081 29 1 8.1811 2.3168 -0.0819 30 1 8.2374 -0.2616 1.0693 31 1 8.2460 -0.4378 -0.7019 32 1 10.2196 1.1144 -0.7976 33 1 9.7764 2.3055 1.3315 34 1 10.1123 0.8107 2.2377 35 1 11.4130 1.6067 1.3192 36 1 10.5274 -1.3459 -0.7681 37 1 11.8517 -0.5259 0.0938 38 1 10.5509 -1.3215 1.0115 39 1 6.1330 3.5475 -0.2230 40 1 5.3619 5.7699 1.4256 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001161650980.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:54:12 Heat of formation + Delta-G solvation = -97.748112 kcal Electronic energy + Delta-G solvation = -21305.704435 eV Core-core repulsion = 18083.847417 eV Total energy + Delta-G solvation = -3221.857018 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -40.92488 -39.59940 -37.77657 -36.88019 -35.67690 -34.37206 -31.53543 -30.36562 -28.57594 -28.03210 -27.21756 -26.12645 -23.65843 -22.83137 -21.21103 -20.94525 -19.20620 -18.32618 -17.67522 -17.35943 -16.92936 -16.64099 -16.45806 -15.91793 -15.20237 -14.79939 -14.63738 -14.43139 -14.28758 -14.03541 -13.88673 -13.54831 -13.31772 -13.03054 -12.90937 -12.82229 -12.76458 -12.66349 -12.43582 -12.08181 -11.89379 -11.74871 -11.57935 -11.51972 -11.36766 -11.19136 -10.69603 -10.50395 -9.28474 -8.71847 -8.01174 -6.42913 0.51542 1.06718 1.34723 1.50057 1.52726 2.17614 2.21072 2.23115 2.75219 2.82933 3.71550 3.88875 4.02248 4.17709 4.38979 4.41148 4.46158 4.53476 4.64672 4.71566 4.77527 4.79093 4.83095 4.86951 4.99956 5.08062 5.09662 5.14446 5.24157 5.28517 5.41255 5.45015 5.50334 5.66478 5.81393 5.91362 6.07645 6.11281 6.53936 6.83587 6.86933 6.94204 7.13808 7.36573 8.26915 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.013549 B = 0.005726 C = 0.004117 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2066.027903 B = 4889.100677 C = 6799.793144 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.033 3.967 2 O -0.375 6.375 3 C 0.503 3.497 4 O -0.557 6.557 5 C -0.323 4.323 6 C 0.006 3.994 7 C -0.301 4.301 8 C 0.254 3.746 9 N -0.744 5.744 10 C 0.132 3.868 11 C -0.101 4.101 12 C -0.146 4.146 13 C -0.139 4.139 14 C -0.264 4.264 15 C 0.157 3.843 16 C -0.454 4.454 17 H 0.080 0.920 18 C 0.035 3.965 19 N -0.806 5.806 20 Si 0.980 3.020 21 H -0.269 1.269 22 H -0.265 1.265 23 H -0.253 1.253 24 H 0.051 0.949 25 H 0.134 0.866 26 H 0.050 0.950 27 H 0.128 0.872 28 H 0.126 0.874 29 H 0.395 0.605 30 H 0.051 0.949 31 H 0.056 0.944 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.053 0.947 35 H 0.069 0.931 36 H 0.061 0.939 37 H 0.069 0.931 38 H 0.059 0.941 39 H 0.106 0.894 40 H 0.290 0.710 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.932 -7.852 -0.827 11.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 O -0.293 6.293 3 C 0.356 3.644 4 O -0.451 6.451 5 C -0.327 4.327 6 C -0.013 4.013 7 C -0.323 4.323 8 C 0.149 3.851 9 N -0.374 5.374 10 C 0.008 3.992 11 C -0.120 4.120 12 C -0.203 4.203 13 C -0.197 4.197 14 C -0.289 4.289 15 C 0.152 3.848 16 C -0.483 4.483 17 H 0.098 0.902 18 C -0.181 4.181 19 N -0.432 5.432 20 Si 0.801 3.199 21 H -0.193 1.193 22 H -0.190 1.190 23 H -0.177 1.177 24 H 0.070 0.930 25 H 0.152 0.848 26 H 0.069 0.931 27 H 0.146 0.854 28 H 0.143 0.857 29 H 0.230 0.770 30 H 0.070 0.930 31 H 0.075 0.925 32 H 0.093 0.907 33 H 0.060 0.940 34 H 0.072 0.928 35 H 0.088 0.912 36 H 0.080 0.920 37 H 0.088 0.912 38 H 0.078 0.922 39 H 0.124 0.876 40 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 7.961 -7.662 -0.656 11.069 hybrid contribution -0.694 1.299 0.034 1.473 sum 7.267 -6.363 -0.622 9.679 Atomic orbital electron populations 1.23357 0.76117 1.04982 1.01588 1.86541 1.23983 1.33122 1.85639 1.21327 0.89688 0.80622 0.72744 1.90696 1.67611 1.36552 1.50251 1.19963 0.87592 0.95635 1.29467 1.20879 0.93405 0.96082 0.90903 1.20164 0.93876 0.95722 1.22512 1.17844 0.83841 0.93572 0.89819 1.44642 1.02021 1.09151 1.81579 1.21446 0.90907 0.86381 1.00474 1.21288 0.92902 0.98468 0.99325 1.21832 1.01659 0.99437 0.97420 1.21735 0.99978 0.95544 1.02446 1.20493 0.93018 0.95732 1.19663 1.18497 0.91841 0.90534 0.83902 1.20162 1.04985 0.92747 1.30369 0.90176 1.26809 0.94844 1.03960 0.92516 1.69785 1.20153 1.30998 1.22226 0.85190 0.79094 0.76350 0.79248 1.19336 1.18992 1.17657 0.92981 0.84767 0.93093 0.85414 0.85651 0.77013 0.93049 0.92530 0.90714 0.93962 0.92779 0.91189 0.92017 0.91154 0.92198 0.87605 0.89880 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.04 10.57 113.37 1.20 2.23 16 2 O -0.37 -15.64 9.85 -57.48 -0.57 -16.20 16 3 C 0.50 25.76 7.85 70.12 0.55 26.31 16 4 O -0.56 -31.37 13.55 19.62 0.27 -31.11 16 5 C -0.32 -16.95 6.07 -18.49 -0.11 -17.06 16 6 C 0.01 0.28 9.60 22.49 0.22 0.50 16 7 C -0.30 -12.54 9.24 22.45 0.21 -12.33 16 8 C 0.25 11.14 6.63 38.31 0.25 11.40 16 9 N -0.74 -25.64 5.43 -339.85 -1.85 -27.49 16 10 C 0.13 3.48 4.27 86.38 0.37 3.85 16 11 C -0.10 -2.03 2.96 -10.79 -0.03 -2.06 16 12 C -0.15 -2.99 9.07 71.98 0.65 -2.34 16 13 C -0.14 -2.15 9.19 71.98 0.66 -1.49 16 14 C -0.26 -13.67 8.46 22.87 0.19 -13.47 16 15 C 0.16 8.86 5.67 -19.90 -0.11 8.75 16 16 C -0.45 -26.40 7.85 23.42 0.18 -26.21 16 17 H 0.08 4.90 5.97 -2.91 -0.02 4.88 16 18 C 0.04 1.87 5.26 85.36 0.45 2.32 16 19 N -0.81 -42.36 11.06 21.87 0.24 -42.12 16 20 Si 0.98 41.04 29.57 68.60 2.03 43.07 16 21 H -0.27 -11.67 7.11 99.48 0.71 -10.97 16 22 H -0.27 -10.65 7.11 99.48 0.71 -9.94 16 23 H -0.25 -9.64 7.11 99.48 0.71 -8.93 16 24 H 0.05 1.64 8.14 -2.38 -0.02 1.62 16 25 H 0.13 2.88 8.14 -2.39 -0.02 2.86 16 26 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 27 H 0.13 4.95 7.63 -2.91 -0.02 4.92 16 28 H 0.13 4.39 6.58 -2.91 -0.02 4.37 16 29 H 0.40 13.12 7.64 -92.71 -0.71 12.41 16 30 H 0.05 1.39 7.91 -2.39 -0.02 1.38 16 31 H 0.06 1.47 7.90 -2.39 -0.02 1.45 16 32 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 33 H 0.04 1.01 7.18 -2.39 -0.02 0.99 16 34 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 35 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 36 H 0.06 0.90 8.14 -2.38 -0.02 0.88 16 37 H 0.07 0.91 8.14 -2.39 -0.02 0.89 16 38 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 39 H 0.11 5.65 6.50 -2.91 -0.02 5.64 16 40 H 0.29 13.63 8.29 -92.70 -0.77 12.86 16 Total: -1.00 -67.09 332.32 5.14 -61.95 By element: Atomic # 1 Polarization: 31.18 SS G_CDS: 0.34 Total: 31.52 kcal Atomic # 6 Polarization: -24.30 SS G_CDS: 4.68 Total: -19.62 kcal Atomic # 7 Polarization: -68.00 SS G_CDS: -1.60 Total: -69.61 kcal Atomic # 8 Polarization: -47.01 SS G_CDS: -0.30 Total: -47.31 kcal Atomic # 14 Polarization: 41.04 SS G_CDS: 2.03 Total: 43.07 kcal Total: -67.09 5.14 -61.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001161650980.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.793 kcal (2) G-P(sol) polarization free energy of solvation -67.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -102.887 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.139 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.955 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds