Wall clock time and date at job start Mon Mar 30 2020 01:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34232 * 116.99623 * 2 1 4 4 O 1.20826 * 120.00236 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99825 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.47380 * 60.00259 * 5 3 2 7 7 C 1.50703 * 109.47064 * 180.02562 * 5 3 2 8 8 C 1.38332 * 119.90762 * 59.72808 * 7 5 3 9 9 C 1.38053 * 120.08393 * 179.72605 * 8 7 5 10 10 C 1.39082 * 119.91005 * 0.52138 * 9 8 7 11 11 N 1.39299 * 120.08850 * 179.72922 * 10 9 8 12 12 C 1.36852 * 119.99996 * 0.02562 * 11 10 9 13 13 H 1.07998 * 119.99771 * 0.02562 * 12 11 10 14 14 C 1.38798 * 119.99751 * 179.97438 * 12 11 10 15 15 N 1.31586 * 120.00250 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99565 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47256 * 90.00242 * 16 14 12 18 18 H 1.48504 * 109.46860 * 210.00473 * 16 14 12 19 19 H 1.48502 * 109.47354 * 330.00032 * 16 14 12 20 20 C 1.39084 * 119.82337 * 359.75177 * 10 9 8 21 21 C 1.38047 * 119.90619 * 359.97438 * 20 10 9 22 22 C 1.53006 * 109.47180 * 300.00213 * 5 3 2 23 23 C 1.52997 * 109.47127 * 59.99852 * 22 5 3 24 24 C 1.52992 * 109.47223 * 180.02562 * 22 5 3 25 25 H 1.09004 * 109.47173 * 299.99204 * 1 2 3 26 26 H 1.08998 * 109.47690 * 59.99564 * 1 2 3 27 27 H 1.09002 * 109.46837 * 179.97438 * 1 2 3 28 28 H 1.07995 * 119.95775 * 359.97438 * 8 7 5 29 29 H 1.08000 * 120.04732 * 180.28947 * 9 8 7 30 30 H 0.96997 * 119.99655 * 180.02562 * 11 10 9 31 31 H 0.97001 * 120.00125 * 180.02562 * 15 14 12 32 32 H 1.07997 * 120.04373 * 179.97438 * 20 10 9 33 33 H 1.07998 * 119.95488 * 179.97438 * 21 20 10 34 34 H 1.08998 * 109.46505 * 299.99723 * 22 5 3 35 35 H 1.09002 * 109.47153 * 180.02562 * 23 22 5 36 36 H 1.09001 * 109.46832 * 60.00321 * 23 22 5 37 37 H 1.09004 * 109.47261 * 300.00303 * 23 22 5 38 38 H 1.09001 * 109.47066 * 299.99881 * 24 22 5 39 39 H 1.08996 * 109.47747 * 59.99547 * 24 22 5 40 40 H 1.09002 * 109.47103 * 179.97438 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9557 0.7811 -0.8908 7 6 3.9934 2.7202 0.0002 8 6 3.6097 3.5523 1.0365 9 6 4.0038 4.8754 1.0437 10 6 4.7784 5.3740 0.0018 11 7 5.1734 6.7098 0.0025 12 6 4.7996 7.5333 1.0296 13 1 4.1988 7.1474 1.8398 14 6 5.1936 8.8642 1.0305 15 7 5.9261 9.3343 0.0436 16 14 4.6839 9.9881 2.4329 17 1 5.7119 9.9411 3.5035 18 1 4.5556 11.3796 1.9304 19 1 3.3790 9.5370 2.9796 20 6 5.1573 4.5354 -1.0411 21 6 4.7639 3.2122 -1.0380 22 6 4.1138 0.5811 1.2483 23 6 3.6801 -0.8861 1.2482 24 6 5.6416 0.6618 1.2481 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.0045 3.1654 1.8429 29 1 3.7078 5.5233 1.8555 30 1 5.7133 7.0563 -0.7250 31 1 6.2017 10.2643 0.0445 32 1 5.7585 4.9190 -1.8522 33 1 5.0573 2.5605 -1.8476 34 1 3.7244 1.0751 2.1385 35 1 4.0698 -1.3803 2.1381 36 1 4.0695 -1.3800 0.3579 37 1 2.5915 -0.9432 1.2486 38 1 6.0314 0.1682 0.3578 39 1 5.9504 1.7071 1.2483 40 1 6.0317 0.1679 2.1380 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163186568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:05 Heat of formation + Delta-G solvation = -70.750850 kcal Electronic energy + Delta-G solvation = -21535.917383 eV Core-core repulsion = 18315.231055 eV Total energy + Delta-G solvation = -3220.686329 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.54284 -38.50843 -36.55990 -36.05674 -34.53003 -31.88986 -29.88682 -29.61785 -28.11140 -26.77000 -26.00980 -24.19680 -21.99907 -21.41521 -20.54705 -19.37492 -17.77940 -17.20398 -16.58029 -16.56736 -16.12152 -14.97197 -14.62684 -14.22957 -13.98045 -13.74080 -13.44879 -13.09288 -12.90172 -12.54228 -12.47132 -12.25573 -12.23376 -12.03742 -12.00318 -11.57015 -11.26611 -11.17102 -10.96698 -10.70221 -10.55717 -10.42458 -10.36138 -10.27025 -10.04378 -9.93214 -9.67003 -8.67090 -7.90881 -6.64912 -6.54957 -3.72447 2.42674 2.51192 2.54705 3.02193 3.17799 3.19808 3.22190 4.06782 4.66757 4.87704 4.98496 5.07938 5.12529 5.18559 5.26299 5.31154 5.36199 5.53302 5.55536 5.70741 5.80608 5.84372 5.91382 5.97834 6.00853 6.15318 6.27545 6.39890 6.46522 6.53848 6.61006 6.69160 6.94703 7.09204 7.25665 7.45647 7.55181 7.64277 7.77900 8.06345 8.13661 8.77667 9.37897 9.56996 10.61995 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.004041 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.643978 B = 6927.553472 C = 7253.154822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.359 6.359 3 C 0.456 3.544 4 O -0.490 6.490 5 C -0.007 4.007 6 H 0.100 0.900 7 C -0.212 4.212 8 C -0.025 4.025 9 C -0.224 4.224 10 C 0.216 3.784 11 N -0.561 5.561 12 C -0.299 4.299 13 H 0.102 0.898 14 C 0.019 3.981 15 N -0.895 5.895 16 Si 0.931 3.069 17 H -0.277 1.277 18 H -0.282 1.282 19 H -0.269 1.269 20 C -0.244 4.244 21 C -0.044 4.044 22 C -0.083 4.083 23 C -0.159 4.159 24 C -0.140 4.140 25 H 0.059 0.941 26 H 0.059 0.941 27 H 0.095 0.905 28 H 0.095 0.905 29 H 0.113 0.887 30 H 0.399 0.601 31 H 0.274 0.726 32 H 0.103 0.897 33 H 0.100 0.900 34 H 0.072 0.928 35 H 0.051 0.949 36 H 0.054 0.946 37 H 0.074 0.926 38 H 0.052 0.948 39 H 0.068 0.932 40 H 0.050 0.950 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.386 -17.581 0.792 18.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.277 6.277 3 C 0.298 3.702 4 O -0.375 6.375 5 C -0.026 4.026 6 H 0.118 0.882 7 C -0.216 4.216 8 C -0.044 4.044 9 C -0.248 4.248 10 C 0.094 3.906 11 N -0.163 5.163 12 C -0.429 4.429 13 H 0.119 0.881 14 C -0.184 4.184 15 N -0.532 5.532 16 Si 0.757 3.243 17 H -0.203 1.203 18 H -0.207 1.207 19 H -0.193 1.193 20 C -0.269 4.269 21 C -0.064 4.064 22 C -0.101 4.101 23 C -0.216 4.216 24 C -0.197 4.197 25 H 0.078 0.922 26 H 0.078 0.922 27 H 0.113 0.887 28 H 0.113 0.887 29 H 0.131 0.869 30 H 0.233 0.767 31 H 0.084 0.916 32 H 0.121 0.879 33 H 0.118 0.882 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.073 0.927 37 H 0.092 0.908 38 H 0.071 0.929 39 H 0.087 0.913 40 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges -4.546 -16.746 0.906 17.376 hybrid contribution -0.268 0.953 0.245 1.019 sum -4.814 -15.794 1.152 16.551 Atomic orbital electron populations 1.23184 0.77862 1.02981 1.02366 1.86632 1.22340 1.34175 1.84526 1.24297 0.92528 0.80972 0.72359 1.90689 1.66877 1.36215 1.43698 1.19822 0.85653 0.96563 1.00548 0.88204 1.18293 1.10649 0.92489 1.00177 1.20265 0.95321 0.92899 0.95928 1.20363 1.07640 0.95649 1.01184 1.17884 0.93924 0.84812 0.93935 1.41039 1.47423 1.04922 1.22882 1.19745 1.30518 0.90944 1.01713 0.88054 1.25278 0.97001 0.97635 0.98509 1.69681 1.35677 1.16500 1.31362 0.85838 0.79108 0.79086 0.80236 1.20262 1.20736 1.19347 1.20146 1.11413 0.94314 1.00998 1.20262 0.96102 0.94247 0.95740 1.21080 0.96950 0.95481 0.96610 1.22133 1.02823 0.95292 1.01326 1.21763 0.93890 1.03068 1.01026 0.92220 0.92237 0.88680 0.88737 0.86931 0.76671 0.91619 0.87918 0.88217 0.91008 0.93042 0.92705 0.90761 0.92889 0.91253 0.93054 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.30 10.55 101.05 1.07 1.37 16 2 O -0.36 -4.52 7.48 -39.26 -0.29 -4.81 16 3 C 0.46 7.03 7.05 36.01 0.25 7.28 16 4 O -0.49 -9.30 14.83 -18.75 -0.28 -9.58 16 5 C -0.01 -0.10 2.10 -92.92 -0.19 -0.29 16 6 H 0.10 1.27 7.87 -51.93 -0.41 0.86 16 7 C -0.21 -3.76 3.14 -104.55 -0.33 -4.08 16 8 C -0.02 -0.48 7.91 -39.61 -0.31 -0.80 16 9 C -0.22 -5.00 9.30 -39.34 -0.37 -5.36 16 10 C 0.22 5.00 6.62 -83.84 -0.55 4.45 16 11 N -0.56 -14.18 5.43 -9.60 -0.05 -14.23 16 12 C -0.30 -7.88 9.56 -15.10 -0.14 -8.02 16 13 H 0.10 2.59 5.68 -52.49 -0.30 2.29 16 14 C 0.02 0.48 5.50 -17.45 -0.10 0.39 16 15 N -0.89 -24.32 13.05 55.49 0.72 -23.60 16 16 Si 0.93 20.29 29.55 -169.99 -5.02 15.27 16 17 H -0.28 -5.96 7.11 56.52 0.40 -5.56 16 18 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 19 H -0.27 -5.76 7.11 56.52 0.40 -5.36 16 20 C -0.24 -5.03 9.90 -39.34 -0.39 -5.42 16 21 C -0.04 -0.80 9.66 -39.62 -0.38 -1.18 16 22 C -0.08 -1.02 2.32 -90.62 -0.21 -1.23 16 23 C -0.16 -1.64 8.67 37.16 0.32 -1.32 16 24 C -0.14 -1.67 8.95 37.15 0.33 -1.34 16 25 H 0.06 0.61 8.13 -51.93 -0.42 0.18 16 26 H 0.06 0.61 8.13 -51.93 -0.42 0.19 16 27 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.09 1.75 7.50 -52.49 -0.39 1.36 16 29 H 0.11 2.55 5.96 -52.49 -0.31 2.24 16 30 H 0.40 10.19 7.90 -40.82 -0.32 9.86 16 31 H 0.27 7.04 8.31 -40.82 -0.34 6.70 16 32 H 0.10 1.99 8.06 -52.49 -0.42 1.56 16 33 H 0.10 1.52 7.94 -52.49 -0.42 1.10 16 34 H 0.07 0.95 7.39 -51.93 -0.38 0.57 16 35 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 36 H 0.05 0.52 8.14 -51.93 -0.42 0.10 16 37 H 0.07 0.80 5.32 -51.93 -0.28 0.52 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.07 0.98 7.22 -51.93 -0.37 0.60 16 40 H 0.05 0.54 8.14 -51.93 -0.42 0.12 16 LS Contribution 329.04 15.07 4.96 4.96 Total: -1.00 -28.84 329.04 -6.67 -35.51 By element: Atomic # 1 Polarization: 17.75 SS G_CDS: -5.70 Total: 12.05 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -1.00 Total: -15.56 kcal Atomic # 7 Polarization: -38.50 SS G_CDS: 0.67 Total: -37.83 kcal Atomic # 8 Polarization: -13.82 SS G_CDS: -0.57 Total: -14.39 kcal Atomic # 14 Polarization: 20.29 SS G_CDS: -5.02 Total: 15.27 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -28.84 -6.67 -35.51 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.237 kcal (2) G-P(sol) polarization free energy of solvation -28.841 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -64.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.673 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.514 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds