Wall clock time and date at job start Mon Mar 30 2020 01:50:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45195 * 1 3 3 C 1.34232 * 116.99623 * 2 1 4 4 O 1.20826 * 120.00236 * 0.02562 * 3 2 1 5 5 C 1.50701 * 119.99825 * 180.02562 * 3 2 1 6 6 H 1.09001 * 109.47380 * 60.00259 * 5 3 2 7 7 C 1.50703 * 109.47064 * 180.02562 * 5 3 2 8 8 C 1.38332 * 119.90762 * 59.72808 * 7 5 3 9 9 C 1.38053 * 120.08393 * 179.72605 * 8 7 5 10 10 C 1.39082 * 119.91005 * 0.52138 * 9 8 7 11 11 N 1.39299 * 120.08850 * 179.72922 * 10 9 8 12 12 C 1.36852 * 119.99996 * 0.02562 * 11 10 9 13 13 H 1.07998 * 119.99771 * 0.02562 * 12 11 10 14 14 C 1.38798 * 119.99751 * 179.97438 * 12 11 10 15 15 N 1.31586 * 120.00250 * 0.02562 * 14 12 11 16 16 Si 1.86799 * 119.99565 * 180.02562 * 14 12 11 17 17 H 1.48496 * 109.47256 * 90.00242 * 16 14 12 18 18 H 1.48504 * 109.46860 * 210.00473 * 16 14 12 19 19 H 1.48502 * 109.47354 * 330.00032 * 16 14 12 20 20 C 1.39084 * 119.82337 * 359.75177 * 10 9 8 21 21 C 1.38047 * 119.90619 * 359.97438 * 20 10 9 22 22 C 1.53006 * 109.47180 * 300.00213 * 5 3 2 23 23 C 1.52997 * 109.47127 * 59.99852 * 22 5 3 24 24 C 1.52992 * 109.47223 * 180.02562 * 22 5 3 25 25 H 1.09004 * 109.47173 * 299.99204 * 1 2 3 26 26 H 1.08998 * 109.47690 * 59.99564 * 1 2 3 27 27 H 1.09002 * 109.46837 * 179.97438 * 1 2 3 28 28 H 1.07995 * 119.95775 * 359.97438 * 8 7 5 29 29 H 1.08000 * 120.04732 * 180.28947 * 9 8 7 30 30 H 0.96997 * 119.99655 * 180.02562 * 11 10 9 31 31 H 0.97001 * 120.00125 * 180.02562 * 15 14 12 32 32 H 1.07997 * 120.04373 * 179.97438 * 20 10 9 33 33 H 1.07998 * 119.95488 * 179.97438 * 21 20 10 34 34 H 1.08998 * 109.46505 * 299.99723 * 22 5 3 35 35 H 1.09002 * 109.47153 * 180.02562 * 23 22 5 36 36 H 1.09001 * 109.46832 * 60.00321 * 23 22 5 37 37 H 1.09004 * 109.47261 * 300.00303 * 23 22 5 38 38 H 1.09001 * 109.47066 * 299.99881 * 24 22 5 39 39 H 1.08996 * 109.47747 * 59.99547 * 24 22 5 40 40 H 1.09002 * 109.47103 * 179.97438 * 24 22 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0613 1.1961 0.0000 4 8 1.4032 2.2094 0.0005 5 6 3.5662 1.2750 -0.0006 6 1 3.9557 0.7811 -0.8908 7 6 3.9934 2.7202 0.0002 8 6 3.6097 3.5523 1.0365 9 6 4.0038 4.8754 1.0437 10 6 4.7784 5.3740 0.0018 11 7 5.1734 6.7098 0.0025 12 6 4.7996 7.5333 1.0296 13 1 4.1988 7.1474 1.8398 14 6 5.1936 8.8642 1.0305 15 7 5.9261 9.3343 0.0436 16 14 4.6839 9.9881 2.4329 17 1 5.7119 9.9411 3.5035 18 1 4.5556 11.3796 1.9304 19 1 3.3790 9.5370 2.9796 20 6 5.1573 4.5354 -1.0411 21 6 4.7639 3.2122 -1.0380 22 6 4.1138 0.5811 1.2483 23 6 3.6801 -0.8861 1.2482 24 6 5.6416 0.6618 1.2481 25 1 -0.3634 0.5137 0.8901 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 -1.0277 -0.0005 28 1 3.0045 3.1654 1.8429 29 1 3.7078 5.5233 1.8555 30 1 5.7133 7.0563 -0.7250 31 1 6.2017 10.2643 0.0445 32 1 5.7585 4.9190 -1.8522 33 1 5.0573 2.5605 -1.8476 34 1 3.7244 1.0751 2.1385 35 1 4.0698 -1.3803 2.1381 36 1 4.0695 -1.3800 0.3579 37 1 2.5915 -0.9432 1.2486 38 1 6.0314 0.1682 0.3578 39 1 5.9504 1.7071 1.2483 40 1 6.0317 0.1679 2.1380 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001163186568.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:50:05 Heat of formation + Delta-G solvation = -85.912644 kcal Electronic energy + Delta-G solvation = -21536.574848 eV Core-core repulsion = 18315.231055 eV Total energy + Delta-G solvation = -3221.343793 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.76588 -40.06717 -37.90329 -37.27420 -36.08770 -33.66542 -31.53792 -30.99583 -29.21525 -27.64724 -27.47736 -25.89533 -23.61840 -22.63651 -21.92843 -20.62510 -19.55149 -18.48737 -18.25498 -17.70382 -17.25371 -16.45756 -16.34399 -15.84201 -15.08987 -15.01894 -14.78730 -14.44685 -14.28306 -13.99426 -13.94185 -13.70839 -13.46225 -13.29289 -12.93977 -12.89758 -12.82827 -12.47788 -12.44717 -12.09819 -12.03299 -11.83328 -11.60997 -11.49040 -11.40025 -11.33427 -11.16312 -10.50097 -9.55207 -8.46046 -8.42079 -5.70582 0.86752 0.87190 1.30200 1.38938 1.44958 1.51398 1.93739 2.27907 2.93779 3.42037 3.48978 3.74179 3.88955 4.09474 4.25280 4.30980 4.35613 4.38405 4.40924 4.55739 4.60667 4.74780 4.80708 4.82810 4.99020 5.01420 5.16744 5.20711 5.21486 5.33092 5.37662 5.44068 5.48361 5.54688 5.68281 5.74150 5.84199 5.95127 6.03787 6.46817 6.84473 6.89019 7.54482 7.67738 8.72937 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.025410 B = 0.004041 C = 0.003859 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1101.643978 B = 6927.553472 C = 7253.154822 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.348 6.348 3 C 0.462 3.538 4 O -0.534 6.534 5 C -0.010 4.010 6 H 0.130 0.870 7 C -0.186 4.186 8 C -0.029 4.029 9 C -0.245 4.245 10 C 0.196 3.804 11 N -0.591 5.591 12 C -0.316 4.316 13 H 0.098 0.902 14 C -0.032 4.032 15 N -0.934 5.934 16 Si 0.995 3.005 17 H -0.271 1.271 18 H -0.279 1.279 19 H -0.265 1.265 20 C -0.248 4.248 21 C -0.043 4.043 22 C -0.079 4.079 23 C -0.152 4.152 24 C -0.138 4.138 25 H 0.054 0.946 26 H 0.054 0.946 27 H 0.134 0.866 28 H 0.104 0.896 29 H 0.098 0.902 30 H 0.391 0.609 31 H 0.273 0.727 32 H 0.113 0.887 33 H 0.142 0.858 34 H 0.058 0.942 35 H 0.064 0.936 36 H 0.068 0.932 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.041 0.959 40 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.925 -21.215 0.682 21.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.265 6.265 3 C 0.306 3.694 4 O -0.423 6.423 5 C -0.029 4.029 6 H 0.148 0.852 7 C -0.190 4.190 8 C -0.048 4.048 9 C -0.269 4.269 10 C 0.080 3.920 11 N -0.197 5.197 12 C -0.446 4.446 13 H 0.115 0.885 14 C -0.230 4.230 15 N -0.575 5.575 16 Si 0.819 3.181 17 H -0.197 1.197 18 H -0.204 1.204 19 H -0.189 1.189 20 C -0.272 4.272 21 C -0.061 4.061 22 C -0.098 4.098 23 C -0.209 4.209 24 C -0.195 4.195 25 H 0.073 0.927 26 H 0.073 0.927 27 H 0.152 0.848 28 H 0.122 0.878 29 H 0.116 0.884 30 H 0.224 0.776 31 H 0.082 0.918 32 H 0.131 0.869 33 H 0.160 0.840 34 H 0.076 0.924 35 H 0.083 0.917 36 H 0.087 0.913 37 H 0.089 0.911 38 H 0.089 0.911 39 H 0.060 0.940 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -5.111 -20.485 0.807 21.128 hybrid contribution -0.223 1.630 0.227 1.660 sum -5.333 -18.855 1.034 19.622 Atomic orbital electron populations 1.23496 0.76078 1.05457 1.01974 1.86616 1.23943 1.32245 1.83684 1.24329 0.92748 0.81116 0.71204 1.90696 1.67842 1.37750 1.45994 1.19952 0.85551 0.94284 1.03082 0.85248 1.18747 1.07664 0.94253 0.98293 1.20443 0.95237 0.92133 0.97026 1.20459 1.08552 0.96817 1.01079 1.18304 0.94116 0.84687 0.94912 1.40954 1.49883 1.05670 1.23222 1.19939 1.30804 0.91718 1.02143 0.88480 1.26095 0.97313 0.98711 1.00912 1.69786 1.37736 1.16663 1.33272 0.84874 0.78794 0.77065 0.77401 1.19679 1.20446 1.18949 1.20464 1.11139 0.95194 1.00442 1.20728 0.95017 0.93687 0.96716 1.21061 0.97159 0.96801 0.94746 1.22068 1.02617 0.93445 1.02755 1.21746 0.93437 1.01631 1.02728 0.92691 0.92680 0.84758 0.87834 0.88432 0.77580 0.91768 0.86913 0.84026 0.92381 0.91698 0.91277 0.91134 0.91128 0.94010 0.91592 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 10.55 113.37 1.20 1.59 16 2 O -0.35 -7.55 7.48 -51.44 -0.38 -7.94 16 3 C 0.46 12.97 7.05 71.24 0.50 13.48 16 4 O -0.53 -19.55 14.83 21.97 0.33 -19.23 16 5 C -0.01 -0.25 2.10 -12.28 -0.03 -0.27 16 6 H 0.13 2.59 7.87 -2.39 -0.02 2.58 16 7 C -0.19 -6.20 3.14 -19.82 -0.06 -6.26 16 8 C -0.03 -1.15 7.91 22.25 0.18 -0.97 16 9 C -0.24 -11.26 9.30 22.43 0.21 -11.05 16 10 C 0.20 9.38 6.62 38.36 0.25 9.63 16 11 N -0.59 -31.50 5.43 -184.28 -1.00 -32.50 16 12 C -0.32 -17.53 9.56 84.04 0.80 -16.72 16 13 H 0.10 5.26 5.68 -2.91 -0.02 5.25 16 14 C -0.03 -1.76 5.50 84.86 0.47 -1.29 16 15 N -0.93 -53.11 13.05 21.65 0.28 -52.82 16 16 Si 0.99 43.10 29.55 68.60 2.03 45.13 16 17 H -0.27 -11.37 7.11 99.48 0.71 -10.66 16 18 H -0.28 -11.82 7.11 99.48 0.71 -11.11 16 19 H -0.27 -11.13 7.11 99.48 0.71 -10.42 16 20 C -0.25 -10.10 9.90 22.43 0.22 -9.88 16 21 C -0.04 -1.44 9.66 22.25 0.21 -1.22 16 22 C -0.08 -1.69 2.32 -10.79 -0.03 -1.71 16 23 C -0.15 -2.46 8.67 71.98 0.62 -1.84 16 24 C -0.14 -2.82 8.95 71.98 0.64 -2.18 16 25 H 0.05 1.00 8.13 -2.38 -0.02 0.98 16 26 H 0.05 1.00 8.13 -2.39 -0.02 0.98 16 27 H 0.13 1.23 8.14 -2.39 -0.02 1.21 16 28 H 0.10 3.82 7.50 -2.91 -0.02 3.80 16 29 H 0.10 4.69 5.96 -2.91 -0.02 4.67 16 30 H 0.39 21.20 7.90 -92.71 -0.73 20.47 16 31 H 0.27 14.63 8.31 -92.71 -0.77 13.86 16 32 H 0.11 4.32 8.06 -2.91 -0.02 4.29 16 33 H 0.14 3.63 7.94 -2.91 -0.02 3.61 16 34 H 0.06 1.41 7.39 -2.39 -0.02 1.39 16 35 H 0.06 0.91 8.14 -2.39 -0.02 0.89 16 36 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 1.22 5.32 -2.38 -0.01 1.20 16 38 H 0.07 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.04 1.08 7.22 -2.39 -0.02 1.06 16 40 H 0.07 1.17 8.14 -2.39 -0.02 1.15 16 Total: -1.00 -65.50 329.04 6.76 -58.73 By element: Atomic # 1 Polarization: 37.02 SS G_CDS: 0.31 Total: 37.33 kcal Atomic # 6 Polarization: -33.91 SS G_CDS: 5.20 Total: -28.71 kcal Atomic # 7 Polarization: -84.60 SS G_CDS: -0.72 Total: -85.32 kcal Atomic # 8 Polarization: -27.11 SS G_CDS: -0.06 Total: -27.17 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.03 Total: 45.13 kcal Total: -65.50 6.76 -58.73 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186568.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.180 kcal (2) G-P(sol) polarization free energy of solvation -65.495 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.733 kcal (6) G-S(sol) free energy of system = (1) + (5) -85.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds