Wall clock time and date at job start Mon Mar 30 2020 02:50:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 O 1.45206 * 109.47129 * 2 1 4 4 C 1.34232 * 116.99878 * 180.02562 * 3 2 1 5 5 O 1.20825 * 120.00049 * 0.02562 * 4 3 2 6 6 C 1.50695 * 119.99727 * 180.02562 * 4 3 2 7 7 H 1.09001 * 109.47646 * 60.00176 * 6 4 3 8 8 C 1.53004 * 109.47319 * 299.99634 * 6 4 3 9 9 C 1.53009 * 109.46734 * 65.00046 * 8 6 4 10 10 C 1.50703 * 109.46852 * 180.02562 * 6 4 3 11 11 C 1.38323 * 119.91181 * 59.72256 * 10 6 4 12 12 C 1.38060 * 120.09278 * 179.76540 * 11 10 6 13 13 C 1.39082 * 119.90297 * 0.50998 * 12 11 10 14 14 N 1.39300 * 120.08759 * 179.76614 * 13 12 11 15 15 C 1.36846 * 119.99747 * 359.97438 * 14 13 12 16 16 H 1.07999 * 120.00226 * 359.97438 * 15 14 13 17 17 C 1.38797 * 119.99986 * 179.97438 * 15 14 13 18 18 N 1.31594 * 119.99524 * 359.97438 * 17 15 14 19 19 Si 1.86796 * 120.00227 * 180.02562 * 17 15 14 20 20 H 1.48502 * 109.47320 * 59.99938 * 19 17 15 21 21 H 1.48502 * 109.47299 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.46979 * 300.00133 * 19 17 15 23 23 C 1.39080 * 119.82154 * 359.74369 * 13 12 11 24 24 C 1.38051 * 119.91374 * 0.02562 * 23 13 12 25 25 H 1.09004 * 109.47059 * 59.99488 * 1 2 3 26 26 H 1.08992 * 109.47060 * 179.97438 * 1 2 3 27 27 H 1.09004 * 109.46930 * 299.99887 * 1 2 3 28 28 H 1.09004 * 109.46930 * 240.00113 * 2 1 3 29 29 H 1.09000 * 109.47312 * 120.00057 * 2 1 3 30 30 H 1.08994 * 109.47474 * 185.00186 * 8 6 4 31 31 H 1.08998 * 109.47288 * 305.00887 * 8 6 4 32 32 H 1.08995 * 109.47004 * 179.97438 * 9 8 6 33 33 H 1.08994 * 109.47255 * 300.00274 * 9 8 6 34 34 H 1.09006 * 109.46414 * 60.00090 * 9 8 6 35 35 H 1.08001 * 119.96017 * 0.02562 * 11 10 6 36 36 H 1.07997 * 120.04531 * 180.25461 * 12 11 10 37 37 H 0.96998 * 120.00019 * 179.97438 * 14 13 12 38 38 H 0.97004 * 119.99485 * 179.97438 * 18 17 15 39 39 H 1.08006 * 120.04398 * 179.97438 * 23 13 12 40 40 H 1.07998 * 119.95280 * 180.02562 * 24 23 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 8 2.0140 1.3690 0.0000 4 6 3.3448 1.5449 -0.0005 5 8 4.0808 0.5867 -0.0015 6 6 3.9207 2.9374 0.0000 7 1 3.5853 3.4691 0.8905 8 6 3.4487 3.6851 -1.2486 9 6 1.9316 3.8745 -1.1865 10 6 5.4257 2.8585 -0.0014 11 6 6.0820 2.2195 -1.0379 12 6 7.4607 2.1492 -1.0454 13 6 8.1894 2.7129 -0.0034 14 7 9.5805 2.6399 -0.0047 15 6 10.2318 2.0127 -1.0318 16 1 9.6674 1.5738 -1.8412 17 6 11.6179 1.9404 -1.0334 18 7 12.3057 2.4757 -0.0473 19 14 12.5071 1.0848 -2.4357 20 1 12.1818 1.7639 -3.7157 21 1 13.9725 1.1448 -2.2026 22 1 12.0738 -0.3339 -2.5041 23 6 7.5255 3.3499 1.0395 24 6 6.1468 3.4199 1.0371 25 1 -0.3633 0.5139 -0.8900 26 1 -0.3633 -1.0276 -0.0005 27 1 -0.3633 0.5138 0.8900 28 1 1.8933 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 3.9349 4.6595 -1.2942 31 1 3.7067 3.1083 -2.1368 32 1 1.5953 4.4075 -2.0758 33 1 1.4454 2.9001 -1.1409 34 1 1.6736 4.4512 -0.2982 35 1 5.5152 1.7785 -1.8446 36 1 7.9725 1.6537 -1.8571 37 1 10.0875 3.0338 0.7225 38 1 13.2744 2.4248 -0.0482 39 1 8.0878 3.7884 1.8507 40 1 5.6306 3.9148 1.8464 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001163186968.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:50:37 Heat of formation + Delta-G solvation = -75.113647 kcal Electronic energy + Delta-G solvation = -21150.805980 eV Core-core repulsion = 17929.930467 eV Total energy + Delta-G solvation = -3220.875514 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 277.146 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.46944 -38.45029 -36.53779 -35.60414 -34.12523 -31.85777 -31.57386 -29.87634 -29.16584 -26.29529 -24.44105 -23.54508 -22.26470 -21.79714 -20.86944 -19.55518 -17.78110 -17.23021 -16.67241 -16.54243 -16.04550 -14.78573 -14.63146 -14.36482 -14.07528 -13.75508 -13.34390 -13.21862 -13.04772 -12.90178 -12.45602 -12.39457 -12.21481 -11.99236 -11.90789 -11.68874 -11.52112 -11.18057 -11.00037 -10.82773 -10.68555 -10.44824 -10.35224 -10.30000 -10.02846 -9.92518 -9.67029 -8.67379 -7.90902 -6.65633 -6.54943 -3.72506 2.41268 2.53671 2.55191 2.97473 3.17334 3.19601 3.21097 4.06827 4.65940 4.81784 4.84638 4.95571 5.05161 5.14376 5.18891 5.28460 5.31941 5.34386 5.57871 5.62183 5.64466 5.77136 5.82686 5.90121 5.97335 6.00485 6.09841 6.23501 6.41337 6.47015 6.64017 6.69482 6.94785 7.09295 7.25317 7.45506 7.55011 7.64059 7.77784 8.08859 8.13975 8.77520 9.37661 9.56866 10.61931 Molecular weight = 277.15amu Principal moments of inertia in cm(-1) A = 0.028136 B = 0.003605 C = 0.003452 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 994.935901 B = 7764.606613 C = 8108.881409 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.056 3.944 3 O -0.358 6.358 4 C 0.458 3.542 5 O -0.492 6.492 6 C -0.010 4.010 7 H 0.100 0.900 8 C -0.110 4.110 9 C -0.163 4.163 10 C -0.218 4.218 11 C -0.024 4.024 12 C -0.225 4.225 13 C 0.216 3.784 14 N -0.561 5.561 15 C -0.300 4.300 16 H 0.101 0.899 17 C 0.019 3.981 18 N -0.895 5.895 19 Si 0.931 3.069 20 H -0.272 1.272 21 H -0.282 1.282 22 H -0.272 1.272 23 C -0.245 4.245 24 C -0.044 4.044 25 H 0.065 0.935 26 H 0.075 0.925 27 H 0.065 0.935 28 H 0.066 0.934 29 H 0.066 0.934 30 H 0.079 0.921 31 H 0.064 0.936 32 H 0.050 0.950 33 H 0.073 0.927 34 H 0.053 0.947 35 H 0.095 0.905 36 H 0.113 0.887 37 H 0.399 0.601 38 H 0.275 0.725 39 H 0.103 0.897 40 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.340 0.398 -0.484 19.350 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.018 4.018 3 O -0.277 6.277 4 C 0.300 3.700 5 O -0.377 6.377 6 C -0.029 4.029 7 H 0.118 0.882 8 C -0.148 4.148 9 C -0.220 4.220 10 C -0.222 4.222 11 C -0.044 4.044 12 C -0.249 4.249 13 C 0.095 3.905 14 N -0.162 5.162 15 C -0.430 4.430 16 H 0.119 0.881 17 C -0.184 4.184 18 N -0.532 5.532 19 Si 0.758 3.242 20 H -0.198 1.198 21 H -0.208 1.208 22 H -0.198 1.198 23 C -0.269 4.269 24 C -0.064 4.064 25 H 0.084 0.916 26 H 0.094 0.906 27 H 0.084 0.916 28 H 0.085 0.915 29 H 0.084 0.916 30 H 0.097 0.903 31 H 0.082 0.918 32 H 0.069 0.931 33 H 0.092 0.908 34 H 0.072 0.928 35 H 0.113 0.887 36 H 0.131 0.869 37 H 0.233 0.767 38 H 0.084 0.916 39 H 0.121 0.879 40 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -18.606 -0.026 -0.601 18.616 hybrid contribution 0.875 -0.520 -0.253 1.049 sum -17.731 -0.546 -0.854 17.760 Atomic orbital electron populations 1.21786 0.93039 1.02630 1.03282 1.22949 0.95002 0.81462 1.02411 1.86600 1.25425 1.31139 1.84507 1.24261 0.79857 0.93507 0.72357 1.90686 1.60164 1.42976 1.43836 1.19764 0.93735 0.88596 1.00824 0.88184 1.21538 0.95977 1.00917 0.96363 1.22037 0.95839 1.02891 1.01219 1.18361 0.90591 1.13000 1.00284 1.20279 0.93464 0.94705 0.95917 1.20370 0.93138 1.10192 1.01197 1.17884 0.84166 0.94549 0.93932 1.41034 1.01463 1.50814 1.22894 1.19703 0.89756 1.31755 1.01777 0.88088 1.25285 0.96583 0.98013 0.98537 1.69680 1.08101 1.43988 1.31470 0.85897 0.78169 0.79673 0.80482 1.19760 1.20760 1.19758 1.20153 0.94094 1.11639 1.01014 1.20278 0.93214 0.97151 0.95727 0.91635 0.90640 0.91627 0.91545 0.91553 0.90262 0.91754 0.93069 0.90844 0.92796 0.88671 0.86893 0.76652 0.91555 0.87873 0.88134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.29 37.16 0.38 -0.73 16 2 C 0.06 0.60 6.19 37.16 0.23 0.83 16 3 O -0.36 -4.60 7.36 -39.26 -0.29 -4.89 16 4 C 0.46 7.13 7.09 36.00 0.26 7.39 16 5 O -0.49 -9.43 14.83 -18.75 -0.28 -9.71 16 6 C -0.01 -0.15 2.50 -92.92 -0.23 -0.38 16 7 H 0.10 1.27 7.87 -51.93 -0.41 0.86 16 8 C -0.11 -1.36 5.13 -26.72 -0.14 -1.50 16 9 C -0.16 -1.66 9.55 37.16 0.36 -1.30 16 10 C -0.22 -3.96 4.41 -104.55 -0.46 -4.42 16 11 C -0.02 -0.48 7.96 -39.62 -0.32 -0.80 16 12 C -0.22 -5.07 9.31 -39.33 -0.37 -5.43 16 13 C 0.22 5.06 6.62 -83.84 -0.55 4.50 16 14 N -0.56 -14.26 5.43 -9.60 -0.05 -14.31 16 15 C -0.30 -7.93 9.56 -15.11 -0.14 -8.08 16 16 H 0.10 2.58 5.68 -52.49 -0.30 2.29 16 17 C 0.02 0.49 5.50 -17.45 -0.10 0.39 16 18 N -0.89 -24.41 13.05 55.49 0.72 -23.68 16 19 Si 0.93 20.33 29.55 -169.99 -5.02 15.31 16 20 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 21 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 22 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 23 C -0.24 -5.10 9.90 -39.34 -0.39 -5.49 16 24 C -0.04 -0.82 9.66 -39.62 -0.38 -1.20 16 25 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 26 H 0.07 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.06 0.47 8.14 -51.93 -0.42 0.04 16 28 H 0.07 0.73 8.13 -51.93 -0.42 0.31 16 29 H 0.07 0.74 8.13 -51.93 -0.42 0.31 16 30 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.06 0.83 7.57 -51.93 -0.39 0.44 16 32 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.78 5.46 -51.93 -0.28 0.50 16 34 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 35 H 0.10 1.78 7.56 -52.49 -0.40 1.38 16 36 H 0.11 2.57 5.96 -52.49 -0.31 2.26 16 37 H 0.40 10.24 7.90 -40.82 -0.32 9.92 16 38 H 0.27 7.09 8.31 -40.82 -0.34 6.75 16 39 H 0.10 2.01 8.06 -52.48 -0.42 1.59 16 40 H 0.10 1.55 7.94 -52.49 -0.42 1.13 16 LS Contribution 332.66 15.07 5.01 5.01 Total: -1.00 -29.09 332.66 -7.53 -36.63 By element: Atomic # 1 Polarization: 17.63 SS G_CDS: -5.77 Total: 11.86 kcal Atomic # 6 Polarization: -14.35 SS G_CDS: -1.86 Total: -16.21 kcal Atomic # 7 Polarization: -38.67 SS G_CDS: 0.67 Total: -37.99 kcal Atomic # 8 Polarization: -14.03 SS G_CDS: -0.57 Total: -14.60 kcal Atomic # 14 Polarization: 20.33 SS G_CDS: -5.02 Total: 15.31 kcal Total LS contribution 5.01 Total: 5.01 kcal Total: -29.09 -7.53 -36.63 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001163186968.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.487 kcal (2) G-P(sol) polarization free energy of solvation -29.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.580 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.627 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.114 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds